Wall clock time and date at job start Mon Mar 30 2020 06:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46843 * 2 1 4 4 C 1.40035 * 110.99698 * 70.01312 * 3 2 1 5 5 C 1.39424 * 129.93064 * 283.70548 * 4 3 2 6 6 C 1.37925 * 120.25217 * 179.25435 * 5 4 3 7 7 C 1.38264 * 120.28874 * 0.60560 * 6 5 4 8 8 C 1.38539 * 119.85258 * 359.55949 * 7 6 5 9 9 F 1.35101 * 119.98440 * 180.18632 * 8 7 6 10 10 C 1.38136 * 120.03080 * 0.21000 * 8 7 6 11 11 C 1.51571 * 131.56625 * 179.60390 * 10 8 7 12 12 C 1.47904 * 110.99799 * 189.99893 * 3 2 1 13 13 H 1.08996 * 110.78239 * 147.13784 * 12 3 2 14 14 C 1.53000 * 110.78018 * 23.70160 * 12 3 2 15 15 C 1.50701 * 109.47105 * 70.34946 * 14 12 3 16 16 H 1.07998 * 119.99911 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00341 * 179.97438 * 15 14 12 18 18 N 1.31510 * 119.99865 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00090 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47186 * 60.00340 * 19 17 15 21 21 H 1.48500 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47432 * 300.00262 * 19 17 15 23 23 H 1.08994 * 109.47590 * 300.00042 * 1 2 3 24 24 H 1.09006 * 109.47476 * 60.00630 * 1 2 3 25 25 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47433 * 240.00008 * 2 1 3 27 27 H 1.08995 * 109.47140 * 119.99777 * 2 1 3 28 28 H 1.08003 * 119.87725 * 359.53713 * 5 4 3 29 29 H 1.08000 * 119.85331 * 180.31345 * 6 5 4 30 30 H 1.08002 * 120.07519 * 179.84536 * 7 6 5 31 31 H 1.08997 * 110.74056 * 314.57914 * 11 10 8 32 32 H 1.09000 * 110.74394 * 77.73496 * 11 10 8 33 33 H 1.09000 * 109.46817 * 190.34362 * 14 12 3 34 34 H 1.08996 * 109.47837 * 310.34764 * 14 12 3 35 35 H 0.97000 * 119.99837 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7655 2.0071 1.2286 5 6 0.5748 2.5173 1.7441 6 6 0.5479 3.0830 3.0017 7 6 1.7038 3.1601 3.7565 8 6 2.8922 2.6587 3.2510 9 9 4.0224 2.7292 3.9878 10 6 2.9222 2.0872 1.9938 11 6 4.0551 1.4753 1.1940 12 6 3.4783 1.4316 -0.2398 13 1 3.7508 2.3298 -0.7937 14 6 3.9478 0.1749 -0.9755 15 6 3.4414 0.2050 -2.3946 16 1 2.8441 1.0369 -2.7372 17 6 3.7406 -0.8296 -3.2555 18 7 4.4676 -1.8429 -2.8381 19 14 3.1123 -0.7926 -5.0142 20 1 3.6409 0.4119 -5.7035 21 1 3.5680 -2.0122 -5.7284 22 1 1.6280 -0.7484 -5.0087 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -0.3311 2.4653 1.1582 29 1 -0.3791 3.4716 3.3967 30 1 1.6793 3.6060 4.7399 31 1 4.9417 2.1079 1.2344 32 1 4.2823 0.4713 1.5525 33 1 5.0373 0.1418 -0.9792 34 1 3.5592 -0.7089 -0.4697 35 1 4.6778 -2.5710 -3.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260063319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:36 Heat of formation + Delta-G solvation = -8.879521 kcal Electronic energy + Delta-G solvation = -18350.561621 eV Core-core repulsion = 15456.006262 eV Total energy + Delta-G solvation = -2894.555359 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -48.67013 -40.54352 -36.84008 -33.13007 -32.82219 -30.41889 -29.84253 -28.00226 -26.77526 -23.40818 -22.83354 -21.41733 -21.07362 -19.26346 -16.99868 -16.45807 -16.31174 -15.56334 -15.49932 -14.97472 -14.68340 -14.33755 -14.20798 -13.39824 -13.05123 -12.59020 -12.47331 -12.23389 -11.81694 -11.65070 -11.49696 -11.23210 -11.15601 -11.01809 -10.79755 -10.61527 -10.41316 -9.94402 -9.39213 -9.28593 -8.93105 -8.45126 -8.43835 -7.48845 -6.07419 -4.09270 1.36781 1.39202 3.31371 3.35990 3.39219 3.71628 4.14674 4.41913 4.48240 4.84261 4.98475 5.23770 5.28055 5.41929 5.50894 5.66665 5.70127 5.74372 5.91129 5.98042 6.13456 6.22818 6.26044 6.34030 6.44026 6.48907 6.58264 6.62189 6.71026 6.88810 7.01836 7.32313 7.53594 7.71130 7.82029 7.92026 8.31007 8.97435 9.54800 11.03271 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033252 B = 0.006350 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.858455 B = 4408.425384 C = 4937.962602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 N -0.478 5.478 4 C 0.139 3.861 5 C -0.133 4.133 6 C -0.081 4.081 7 C -0.183 4.183 8 C 0.124 3.876 9 F -0.145 7.145 10 C -0.181 4.181 11 C -0.105 4.105 12 C 0.090 3.910 13 H 0.087 0.913 14 C 0.016 3.984 15 C -0.513 4.513 16 H 0.062 0.938 17 C 0.058 3.942 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.277 1.277 21 H -0.289 1.289 22 H -0.276 1.276 23 H 0.048 0.952 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.131 0.869 27 H 0.027 0.973 28 H 0.129 0.871 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.079 0.921 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.030 0.970 35 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.699 6.674 10.350 14.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.080 4.080 3 N -0.195 5.195 4 C 0.041 3.959 5 C -0.153 4.153 6 C -0.100 4.100 7 C -0.202 4.202 8 C 0.104 3.896 9 F -0.124 7.124 10 C -0.185 4.185 11 C -0.143 4.143 12 C -0.016 4.016 13 H 0.105 0.895 14 C -0.021 4.021 15 C -0.551 4.551 16 H 0.081 0.919 17 C -0.143 4.143 18 N -0.534 5.534 19 Si 0.720 3.280 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.201 1.201 23 H 0.066 0.934 24 H 0.080 0.920 25 H 0.074 0.926 26 H 0.149 0.851 27 H 0.045 0.955 28 H 0.147 0.853 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.097 0.903 32 H 0.100 0.900 33 H 0.046 0.954 34 H 0.048 0.952 35 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -6.839 6.696 9.822 13.714 hybrid contribution 0.357 -0.305 -0.170 0.500 sum -6.482 6.391 9.651 13.267 Atomic orbital electron populations 1.21925 0.96109 1.01174 1.01716 1.22509 0.94689 0.86913 1.03859 1.60164 1.17035 1.16951 1.25302 1.19761 0.92573 0.94517 0.89066 1.20633 0.97085 1.01379 0.96237 1.20686 0.97474 0.98190 0.93605 1.20902 0.91674 1.05897 1.01755 1.17105 0.82522 1.00866 0.89114 1.91454 1.49876 1.94475 1.76553 1.21264 0.99423 1.03990 0.93815 1.21852 0.96016 1.00589 0.95818 1.22970 0.83011 1.02946 0.92690 0.89454 1.19501 0.97121 0.90248 0.95194 1.21099 1.32571 1.06020 0.95405 0.91950 1.25011 0.95119 0.95551 0.98641 1.69946 1.38009 1.09471 1.35986 0.86643 0.79339 0.77287 0.84694 1.20238 1.21433 1.20134 0.93351 0.91991 0.92594 0.85098 0.95474 0.85293 0.85118 0.85137 0.90262 0.90019 0.95400 0.95218 0.92847 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 9.78 37.16 0.36 -2.04 16 2 C 0.04 0.85 4.29 -3.82 -0.02 0.83 16 3 N -0.48 -9.28 4.98 -161.58 -0.80 -10.09 16 4 C 0.14 2.42 5.28 -83.42 -0.44 1.98 16 5 C -0.13 -1.92 8.54 -39.25 -0.34 -2.25 16 6 C -0.08 -0.99 10.02 -39.69 -0.40 -1.39 16 7 C -0.18 -2.40 10.04 -39.46 -0.40 -2.80 16 8 C 0.12 1.96 7.29 -39.51 -0.29 1.68 16 9 F -0.14 -2.34 17.27 2.25 0.04 -2.30 16 10 C -0.18 -3.17 6.21 -103.98 -0.65 -3.81 16 11 C -0.10 -1.91 6.51 -26.61 -0.17 -2.08 16 12 C 0.09 1.85 3.25 -66.32 -0.22 1.63 16 13 H 0.09 1.83 8.14 -51.93 -0.42 1.41 16 14 C 0.02 0.39 3.89 -27.88 -0.11 0.29 16 15 C -0.51 -13.50 7.47 -34.44 -0.26 -13.76 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 18 N -0.90 -25.52 13.29 55.43 0.74 -24.78 16 19 Si 0.89 20.98 29.54 -169.99 -5.02 15.96 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H 0.05 0.69 5.56 -51.93 -0.29 0.40 16 24 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.13 2.94 4.74 -51.93 -0.25 2.69 16 27 H 0.03 0.52 7.97 -51.93 -0.41 0.11 16 28 H 0.13 1.67 7.16 -52.48 -0.38 1.30 16 29 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 30 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 32 H 0.08 1.51 7.92 -51.93 -0.41 1.10 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.03 0.74 6.00 -51.93 -0.31 0.43 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 286.63 15.07 4.32 4.32 Total: -1.00 -27.92 286.63 -8.29 -36.21 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -4.55 Total: 0.91 kcal Atomic # 6 Polarization: -17.24 SS G_CDS: -3.01 Total: -20.24 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: -0.07 Total: -34.87 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.30 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -27.92 -8.29 -36.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.329 kcal (2) G-P(sol) polarization free energy of solvation -27.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds