Wall clock time and date at job start Mon Mar 30 2020 06:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46910 * 109.46843 * 2 1 4 4 C 1.40035 * 110.99698 * 70.01312 * 3 2 1 5 5 C 1.39424 * 129.93064 * 283.70548 * 4 3 2 6 6 C 1.37925 * 120.25217 * 179.25435 * 5 4 3 7 7 C 1.38264 * 120.28874 * 0.60560 * 6 5 4 8 8 C 1.38539 * 119.85258 * 359.55949 * 7 6 5 9 9 F 1.35101 * 119.98440 * 180.18632 * 8 7 6 10 10 C 1.38136 * 120.03080 * 0.21000 * 8 7 6 11 11 C 1.51571 * 131.56625 * 179.60390 * 10 8 7 12 12 C 1.47904 * 110.99799 * 189.99893 * 3 2 1 13 13 H 1.08996 * 110.78239 * 147.13784 * 12 3 2 14 14 C 1.53000 * 110.78018 * 23.70160 * 12 3 2 15 15 C 1.50701 * 109.47105 * 70.34946 * 14 12 3 16 16 H 1.07998 * 119.99911 * 359.97438 * 15 14 12 17 17 C 1.37878 * 120.00341 * 179.97438 * 15 14 12 18 18 N 1.31510 * 119.99865 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00090 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.47186 * 60.00340 * 19 17 15 21 21 H 1.48500 * 109.47092 * 180.02562 * 19 17 15 22 22 H 1.48496 * 109.47432 * 300.00262 * 19 17 15 23 23 H 1.08994 * 109.47590 * 300.00042 * 1 2 3 24 24 H 1.09006 * 109.47476 * 60.00630 * 1 2 3 25 25 H 1.09002 * 109.47045 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47433 * 240.00008 * 2 1 3 27 27 H 1.08995 * 109.47140 * 119.99777 * 2 1 3 28 28 H 1.08003 * 119.87725 * 359.53713 * 5 4 3 29 29 H 1.08000 * 119.85331 * 180.31345 * 6 5 4 30 30 H 1.08002 * 120.07519 * 179.84536 * 7 6 5 31 31 H 1.08997 * 110.74056 * 314.57914 * 11 10 8 32 32 H 1.09000 * 110.74394 * 77.73496 * 11 10 8 33 33 H 1.09000 * 109.46817 * 190.34362 * 14 12 3 34 34 H 1.08996 * 109.47837 * 310.34764 * 14 12 3 35 35 H 0.97000 * 119.99837 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 1.7655 2.0071 1.2286 5 6 0.5748 2.5173 1.7441 6 6 0.5479 3.0830 3.0017 7 6 1.7038 3.1601 3.7565 8 6 2.8922 2.6587 3.2510 9 9 4.0224 2.7292 3.9878 10 6 2.9222 2.0872 1.9938 11 6 4.0551 1.4753 1.1940 12 6 3.4783 1.4316 -0.2398 13 1 3.7508 2.3298 -0.7937 14 6 3.9478 0.1749 -0.9755 15 6 3.4414 0.2050 -2.3946 16 1 2.8441 1.0369 -2.7372 17 6 3.7406 -0.8296 -3.2555 18 7 4.4676 -1.8429 -2.8381 19 14 3.1123 -0.7926 -5.0142 20 1 3.6409 0.4119 -5.7035 21 1 3.5680 -2.0122 -5.7284 22 1 1.6280 -0.7484 -5.0087 23 1 -0.3634 0.5138 0.8899 24 1 -0.3634 0.5137 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 -0.3311 2.4653 1.1582 29 1 -0.3791 3.4716 3.3967 30 1 1.6793 3.6060 4.7399 31 1 4.9417 2.1079 1.2344 32 1 4.2823 0.4713 1.5525 33 1 5.0373 0.1418 -0.9792 34 1 3.5592 -0.7089 -0.4697 35 1 4.6778 -2.5710 -3.4436 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260063319.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:35 Heat of formation + Delta-G solvation = -24.121033 kcal Electronic energy + Delta-G solvation = -18351.222543 eV Core-core repulsion = 15456.006262 eV Total energy + Delta-G solvation = -2895.216281 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.88628 -41.91731 -38.13588 -35.10225 -34.22414 -32.06424 -31.10894 -29.35304 -28.41804 -25.23180 -24.20249 -22.78365 -22.35239 -20.83628 -18.51961 -18.21935 -17.66297 -16.84757 -16.71158 -16.49591 -16.31869 -15.78653 -15.75310 -14.69418 -14.44033 -14.08329 -13.95228 -13.77420 -13.44789 -13.07096 -12.98994 -12.83427 -12.49581 -12.47553 -12.39895 -12.23067 -12.02322 -11.69444 -11.23672 -11.18078 -10.54868 -10.30828 -9.62967 -8.87720 -8.17697 -6.25669 0.20605 0.23335 1.42853 1.44102 1.52160 2.42743 2.55839 2.78820 3.16622 3.31005 3.52855 3.77759 4.02034 4.08837 4.23525 4.31053 4.39852 4.44815 4.55945 4.68827 4.77262 4.80020 4.86435 4.99848 5.06788 5.18940 5.21086 5.34112 5.36629 5.43977 5.47034 5.56536 5.78627 5.85563 6.08249 6.22699 6.44027 6.86438 7.41736 8.93431 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.033252 B = 0.006350 C = 0.005669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.858455 B = 4408.425384 C = 4937.962602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.049 3.951 3 N -0.485 5.485 4 C 0.111 3.889 5 C -0.129 4.129 6 C -0.063 4.063 7 C -0.168 4.168 8 C 0.107 3.893 9 F -0.151 7.151 10 C -0.203 4.203 11 C -0.099 4.099 12 C 0.094 3.906 13 H 0.079 0.921 14 C 0.028 3.972 15 C -0.516 4.516 16 H 0.058 0.942 17 C 0.007 3.993 18 N -0.931 5.931 19 Si 0.957 3.043 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.267 1.267 23 H 0.069 0.931 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.091 0.909 27 H 0.016 0.984 28 H 0.147 0.853 29 H 0.179 0.821 30 H 0.164 0.836 31 H 0.084 0.916 32 H 0.069 0.931 33 H 0.000 1.000 34 H 0.013 0.987 35 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.295 8.338 11.539 17.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.201 5.201 4 C 0.014 3.986 5 C -0.149 4.149 6 C -0.081 4.081 7 C -0.187 4.187 8 C 0.087 3.913 9 F -0.130 7.130 10 C -0.207 4.207 11 C -0.138 4.138 12 C -0.013 4.013 13 H 0.097 0.903 14 C -0.009 4.009 15 C -0.554 4.554 16 H 0.077 0.923 17 C -0.191 4.191 18 N -0.572 5.572 19 Si 0.782 3.218 20 H -0.197 1.197 21 H -0.212 1.212 22 H -0.192 1.192 23 H 0.088 0.912 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.035 0.965 28 H 0.165 0.835 29 H 0.196 0.804 30 H 0.182 0.818 31 H 0.103 0.897 32 H 0.087 0.913 33 H 0.018 0.982 34 H 0.031 0.969 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -9.443 8.378 11.027 16.762 hybrid contribution 1.146 -0.773 -0.422 1.446 sum -8.297 7.605 10.604 15.464 Atomic orbital electron populations 1.21853 0.93137 1.02325 1.02599 1.22331 0.97096 0.86850 1.01345 1.60188 1.15599 1.17020 1.27335 1.19920 0.93995 0.96176 0.88495 1.20968 0.96347 1.00372 0.97208 1.21216 0.98885 0.95924 0.92070 1.21364 0.90493 1.03869 1.02947 1.17398 0.83504 1.01686 0.88673 1.91438 1.50468 1.94593 1.76480 1.21204 0.98814 1.05638 0.95025 1.21669 0.96982 1.00305 0.94797 1.22655 0.84821 1.00316 0.93521 0.90334 1.19281 0.95121 0.91586 0.94907 1.21323 1.32026 1.05688 0.96409 0.92336 1.25806 0.95347 0.95180 1.02743 1.70069 1.39454 1.10220 1.37408 0.85621 0.79092 0.77330 0.79745 1.19678 1.21158 1.19205 0.91231 0.92156 0.91375 0.89051 0.96537 0.83512 0.80381 0.81812 0.89749 0.91302 0.98168 0.96891 0.92854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.31 9.78 71.98 0.70 -3.60 16 2 C 0.05 1.91 4.29 86.30 0.37 2.28 16 3 N -0.48 -19.07 4.98 -665.11 -3.31 -22.38 16 4 C 0.11 3.75 5.28 38.28 0.20 3.95 16 5 C -0.13 -3.25 8.54 22.48 0.19 -3.06 16 6 C -0.06 -1.20 10.02 22.20 0.22 -0.98 16 7 C -0.17 -3.67 10.04 22.35 0.22 -3.44 16 8 C 0.11 3.20 7.29 22.32 0.16 3.36 16 9 F -0.15 -4.69 17.27 44.97 0.78 -3.91 16 10 C -0.20 -7.03 6.21 -19.45 -0.12 -7.15 16 11 C -0.10 -3.79 6.51 30.67 0.20 -3.59 16 12 C 0.09 4.04 3.25 45.27 0.15 4.19 16 13 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 14 C 0.03 1.44 3.89 29.85 0.12 1.56 16 15 C -0.52 -28.24 7.47 25.60 0.19 -28.05 16 16 H 0.06 3.18 7.74 -2.91 -0.02 3.16 16 17 C 0.01 0.40 5.46 84.66 0.46 0.86 16 18 N -0.93 -54.98 13.29 21.45 0.28 -54.69 16 19 Si 0.96 43.67 29.54 68.60 2.03 45.70 16 20 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 21 H -0.29 -12.85 7.11 99.48 0.71 -12.15 16 22 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 23 H 0.07 1.80 5.56 -2.39 -0.01 1.78 16 24 H 0.06 1.84 8.14 -2.38 -0.02 1.82 16 25 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.09 4.32 4.74 -2.39 -0.01 4.30 16 27 H 0.02 0.66 7.97 -2.39 -0.02 0.64 16 28 H 0.15 3.16 7.16 -2.91 -0.02 3.14 16 29 H 0.18 1.81 8.06 -2.91 -0.02 1.79 16 30 H 0.16 2.52 8.06 -2.91 -0.02 2.50 16 31 H 0.08 3.02 8.14 -2.39 -0.02 3.00 16 32 H 0.07 2.73 7.92 -2.39 -0.02 2.71 16 33 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 34 H 0.01 0.70 6.00 -2.39 -0.01 0.68 16 35 H 0.26 14.73 8.31 -92.71 -0.77 13.96 16 Total: -1.00 -62.69 286.63 3.94 -58.76 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.09 Total: 10.21 kcal Atomic # 6 Polarization: -36.75 SS G_CDS: 3.07 Total: -33.68 kcal Atomic # 7 Polarization: -74.04 SS G_CDS: -3.03 Total: -77.07 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.78 Total: -3.91 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -62.69 3.94 -58.76 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260063319.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.635 kcal (2) G-P(sol) polarization free energy of solvation -62.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds