Wall clock time and date at job start Mon Mar 30 2020 07:01:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47358 * 2 1 4 4 C 1.47907 * 111.00245 * 189.99930 * 3 2 1 5 5 C 1.54593 * 102.79916 * 265.40218 * 4 3 2 6 6 H 1.09002 * 110.73448 * 216.19508 * 5 4 3 7 7 C 1.53005 * 110.73741 * 92.88391 * 5 4 3 8 8 C 1.50692 * 109.47193 * 174.99753 * 7 5 4 9 9 H 1.08000 * 120.00369 * 0.02562 * 8 7 5 10 10 C 1.37876 * 120.00164 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00208 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99597 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47311 * 90.00453 * 12 10 8 14 14 H 1.48504 * 109.47238 * 210.00007 * 12 10 8 15 15 H 1.48501 * 109.47454 * 330.00095 * 12 10 8 16 16 C 1.51882 * 102.71992 * 334.66416 * 5 4 3 17 17 C 1.37941 * 131.45510 * 196.27507 * 16 5 4 18 18 C 1.38475 * 120.05948 * 179.11692 * 17 16 5 19 19 F 1.35101 * 120.08115 * 179.97438 * 18 17 16 20 20 C 1.38478 * 119.83045 * 359.97438 * 18 17 16 21 21 C 1.37923 * 120.23759 * 0.15065 * 20 18 17 22 22 C 1.38929 * 108.03220 * 15.71506 * 16 5 4 23 23 H 1.09001 * 109.47132 * 300.00213 * 1 2 3 24 24 H 1.09004 * 109.46875 * 59.99537 * 1 2 3 25 25 H 1.08996 * 109.47597 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47258 * 240.00529 * 2 1 3 27 27 H 1.08997 * 109.47230 * 120.00396 * 2 1 3 28 28 H 1.09002 * 110.77757 * 23.78263 * 4 3 2 29 29 H 1.08998 * 110.77903 * 147.02539 * 4 3 2 30 30 H 1.09000 * 109.46964 * 294.99879 * 7 5 4 31 31 H 1.09003 * 109.46930 * 54.99802 * 7 5 4 32 32 H 0.97009 * 119.99623 * 179.97438 * 11 10 8 33 33 H 1.08002 * 119.96852 * 359.08535 * 17 16 5 34 34 H 1.08004 * 119.87872 * 180.14284 * 20 18 17 35 35 H 1.08001 * 119.88191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4785 1.4314 -0.2398 5 6 4.0596 1.4758 1.1921 6 1 4.9457 2.1096 1.2295 7 6 4.3794 0.0651 1.6909 8 6 5.0557 0.1489 3.0350 9 1 5.2387 1.1119 3.4884 10 6 5.4398 -1.0039 3.6865 11 7 6.0296 -0.9309 4.8597 12 14 5.1213 -2.6696 2.9033 13 1 6.2848 -3.0525 2.0637 14 1 4.9223 -3.6868 3.9668 15 1 3.9035 -2.5939 2.0568 16 6 2.9235 2.0845 1.9955 17 6 2.8961 2.6548 3.2512 18 6 1.7108 3.1612 3.7573 19 9 1.6834 3.7194 4.9873 20 6 0.5538 3.0942 2.9994 21 6 0.5776 2.5222 1.7446 22 6 1.7663 2.0074 1.2304 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8126 0.5368 -0.7652 29 1 3.7506 2.3288 -0.7955 30 1 3.4554 -0.5055 1.7840 31 1 5.0421 -0.4298 0.9809 32 1 6.2995 -1.7420 5.3182 33 1 3.7998 2.7058 3.8403 34 1 -0.3706 3.4910 3.3925 35 1 -0.3281 2.4733 1.1583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260105199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:41 Heat of formation + Delta-G solvation = -11.793514 kcal Electronic energy + Delta-G solvation = -18488.934494 eV Core-core repulsion = 15594.252775 eV Total energy + Delta-G solvation = -2894.681719 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.43682 -40.62311 -36.37400 -34.12310 -32.39657 -30.45438 -29.71612 -28.57304 -26.57517 -23.14380 -22.76978 -22.09478 -20.55072 -19.68894 -16.93463 -16.72938 -16.24825 -15.95408 -15.29254 -14.89372 -14.54814 -14.31042 -13.77634 -13.35118 -13.08305 -12.99104 -12.66176 -12.32663 -12.09765 -11.84264 -11.62823 -11.58528 -11.48898 -10.99280 -10.83716 -10.69192 -10.10410 -9.99910 -9.83582 -9.39068 -8.79768 -8.60457 -8.46659 -7.48724 -6.10687 -4.09050 1.50932 1.66632 3.23521 3.32180 3.32820 3.82305 4.04799 4.37634 4.61684 4.96940 5.07244 5.21389 5.23503 5.35282 5.38288 5.53638 5.56272 5.65441 5.78566 5.87436 5.97170 6.00493 6.14862 6.25825 6.29140 6.37084 6.50116 6.55097 6.60371 6.81790 6.99810 7.04605 7.21676 7.26226 7.57164 7.68595 8.44739 8.92719 9.50775 11.02381 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.009678 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.909157 B = 2892.471527 C = 3850.083353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.044 3.956 3 N -0.488 5.488 4 C 0.046 3.954 5 C -0.067 4.067 6 H 0.088 0.912 7 C -0.002 4.002 8 C -0.518 4.518 9 H 0.074 0.926 10 C 0.069 3.931 11 N -0.899 5.899 12 Si 0.876 3.124 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.267 1.267 16 C -0.066 4.066 17 C -0.104 4.104 18 C 0.079 3.921 19 F -0.145 7.145 20 C -0.152 4.152 21 C -0.092 4.092 22 C 0.070 3.930 23 H 0.060 0.940 24 H 0.059 0.941 25 H 0.057 0.943 26 H 0.076 0.924 27 H 0.053 0.947 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.019 0.981 31 H 0.019 0.981 32 H 0.263 0.737 33 H 0.139 0.861 34 H 0.131 0.869 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.143 4.597 -8.927 14.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.081 4.081 3 N -0.207 5.207 4 C -0.080 4.080 5 C -0.086 4.086 6 H 0.107 0.893 7 C -0.039 4.039 8 C -0.555 4.555 9 H 0.092 0.908 10 C -0.133 4.133 11 N -0.538 5.538 12 Si 0.703 3.297 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.192 1.192 16 C -0.068 4.068 17 C -0.124 4.124 18 C 0.060 3.940 19 F -0.123 7.123 20 C -0.171 4.171 21 C -0.112 4.112 22 C -0.026 4.026 23 H 0.079 0.921 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.094 0.906 27 H 0.071 0.929 28 H 0.101 0.899 29 H 0.101 0.899 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.157 0.843 34 H 0.149 0.851 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.338 4.714 -9.202 14.621 hybrid contribution 0.364 -1.296 0.662 1.500 sum -9.974 3.417 -8.540 13.568 Atomic orbital electron populations 1.21894 0.95080 1.01528 1.02471 1.22339 0.96048 0.87732 1.01990 1.60432 1.15710 1.15933 1.28585 1.23314 0.84953 1.02601 0.97178 1.21463 0.95831 0.99789 0.91558 0.89340 1.19664 0.96555 0.90218 0.97418 1.21032 1.38042 0.94854 1.01622 0.90771 1.24992 0.94581 0.98993 0.94686 1.69903 1.40790 1.28662 1.14414 0.86850 0.79154 0.84403 0.79296 1.20225 1.21310 1.19195 1.20843 0.96498 0.96336 0.93164 1.20505 0.97652 0.98495 0.95724 1.17508 0.94858 1.00280 0.81374 1.91460 1.97251 1.83178 1.40438 1.20732 0.97295 1.03940 0.95159 1.20193 0.96570 0.99433 0.94981 1.19593 0.94105 0.98978 0.89964 0.92148 0.92165 0.92363 0.90576 0.92881 0.89905 0.89888 0.96313 0.96313 0.92677 0.84313 0.85086 0.85461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 9.78 37.16 0.36 -1.52 16 2 C 0.04 0.66 5.34 -3.83 -0.02 0.64 16 3 N -0.49 -7.69 5.06 -168.99 -0.86 -8.54 16 4 C 0.05 0.72 6.54 -2.43 -0.02 0.71 16 5 C -0.07 -1.28 2.98 -90.35 -0.27 -1.55 16 6 H 0.09 1.68 8.14 -51.93 -0.42 1.26 16 7 C 0.00 -0.03 3.33 -27.88 -0.09 -0.13 16 8 C -0.52 -14.10 9.17 -34.44 -0.32 -14.42 16 9 H 0.07 2.17 7.03 -52.49 -0.37 1.80 16 10 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 11 N -0.90 -27.26 13.96 55.43 0.77 -26.49 16 12 Si 0.88 21.27 27.47 -169.99 -4.67 16.60 16 13 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 16 C -0.07 -1.26 5.31 -103.89 -0.55 -1.81 16 17 C -0.10 -2.04 9.63 -39.60 -0.38 -2.42 16 18 C 0.08 1.41 7.31 -39.41 -0.29 1.12 16 19 F -0.14 -2.59 17.27 2.25 0.04 -2.55 16 20 C -0.15 -2.29 10.00 -39.61 -0.40 -2.69 16 21 C -0.09 -1.37 8.55 -39.27 -0.34 -1.71 16 22 C 0.07 1.18 5.28 -83.35 -0.44 0.74 16 23 H 0.06 0.77 5.58 -51.93 -0.29 0.48 16 24 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 27 H 0.05 0.93 5.83 -51.93 -0.30 0.63 16 28 H 0.08 1.20 7.35 -51.93 -0.38 0.82 16 29 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.02 0.44 4.94 -51.93 -0.26 0.18 16 31 H 0.02 0.41 7.54 -51.93 -0.39 0.02 16 32 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 33 H 0.14 2.89 7.27 -52.49 -0.38 2.50 16 34 H 0.13 1.60 8.06 -52.48 -0.42 1.18 16 35 H 0.13 1.58 7.18 -52.49 -0.38 1.21 16 LS Contribution 282.71 15.07 4.26 4.26 Total: -1.00 -29.72 282.71 -7.73 -37.45 By element: Atomic # 1 Polarization: 4.88 SS G_CDS: -4.44 Total: 0.44 kcal Atomic # 6 Polarization: -18.33 SS G_CDS: -2.84 Total: -21.17 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: -0.08 Total: -35.03 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.67 Total: 16.60 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -29.72 -7.73 -37.45 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.657 kcal (2) G-P(sol) polarization free energy of solvation -29.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.731 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds