Wall clock time and date at job start Mon Mar 30 2020 07:01:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46901 * 109.47358 * 2 1 4 4 C 1.47907 * 111.00245 * 189.99930 * 3 2 1 5 5 C 1.54593 * 102.79916 * 265.40218 * 4 3 2 6 6 H 1.09002 * 110.73448 * 216.19508 * 5 4 3 7 7 C 1.53005 * 110.73741 * 92.88391 * 5 4 3 8 8 C 1.50692 * 109.47193 * 174.99753 * 7 5 4 9 9 H 1.08000 * 120.00369 * 0.02562 * 8 7 5 10 10 C 1.37876 * 120.00164 * 179.97438 * 8 7 5 11 11 N 1.31513 * 120.00208 * 180.02562 * 10 8 7 12 12 Si 1.86800 * 119.99597 * 359.97438 * 10 8 7 13 13 H 1.48502 * 109.47311 * 90.00453 * 12 10 8 14 14 H 1.48504 * 109.47238 * 210.00007 * 12 10 8 15 15 H 1.48501 * 109.47454 * 330.00095 * 12 10 8 16 16 C 1.51882 * 102.71992 * 334.66416 * 5 4 3 17 17 C 1.37941 * 131.45510 * 196.27507 * 16 5 4 18 18 C 1.38475 * 120.05948 * 179.11692 * 17 16 5 19 19 F 1.35101 * 120.08115 * 179.97438 * 18 17 16 20 20 C 1.38478 * 119.83045 * 359.97438 * 18 17 16 21 21 C 1.37923 * 120.23759 * 0.15065 * 20 18 17 22 22 C 1.38929 * 108.03220 * 15.71506 * 16 5 4 23 23 H 1.09001 * 109.47132 * 300.00213 * 1 2 3 24 24 H 1.09004 * 109.46875 * 59.99537 * 1 2 3 25 25 H 1.08996 * 109.47597 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.47258 * 240.00529 * 2 1 3 27 27 H 1.08997 * 109.47230 * 120.00396 * 2 1 3 28 28 H 1.09002 * 110.77757 * 23.78263 * 4 3 2 29 29 H 1.08998 * 110.77903 * 147.02539 * 4 3 2 30 30 H 1.09000 * 109.46964 * 294.99879 * 7 5 4 31 31 H 1.09003 * 109.46930 * 54.99802 * 7 5 4 32 32 H 0.97009 * 119.99623 * 179.97438 * 11 10 8 33 33 H 1.08002 * 119.96852 * 359.08535 * 17 16 5 34 34 H 1.08004 * 119.87872 * 180.14284 * 20 18 17 35 35 H 1.08001 * 119.88191 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4785 1.4314 -0.2398 5 6 4.0596 1.4758 1.1921 6 1 4.9457 2.1096 1.2295 7 6 4.3794 0.0651 1.6909 8 6 5.0557 0.1489 3.0350 9 1 5.2387 1.1119 3.4884 10 6 5.4398 -1.0039 3.6865 11 7 6.0296 -0.9309 4.8597 12 14 5.1213 -2.6696 2.9033 13 1 6.2848 -3.0525 2.0637 14 1 4.9223 -3.6868 3.9668 15 1 3.9035 -2.5939 2.0568 16 6 2.9235 2.0845 1.9955 17 6 2.8961 2.6548 3.2512 18 6 1.7108 3.1612 3.7573 19 9 1.6834 3.7194 4.9873 20 6 0.5538 3.0942 2.9994 21 6 0.5776 2.5222 1.7446 22 6 1.7663 2.0074 1.2304 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.8933 -0.5137 -0.8900 27 1 1.8933 -0.5139 0.8899 28 1 3.8126 0.5368 -0.7652 29 1 3.7506 2.3288 -0.7955 30 1 3.4554 -0.5055 1.7840 31 1 5.0421 -0.4298 0.9809 32 1 6.2995 -1.7420 5.3182 33 1 3.7998 2.7058 3.8403 34 1 -0.3706 3.4910 3.3925 35 1 -0.3281 2.4733 1.1583 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260105199.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:40 Heat of formation + Delta-G solvation = -29.560485 kcal Electronic energy + Delta-G solvation = -18489.704928 eV Core-core repulsion = 15594.252775 eV Total energy + Delta-G solvation = -2895.452153 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.85137 -41.95005 -37.67752 -35.76991 -34.21441 -31.79864 -31.26292 -29.87662 -28.16430 -24.65760 -24.05102 -23.62308 -21.85068 -21.21632 -18.94238 -18.13870 -17.66920 -17.24536 -16.72619 -16.46048 -15.91577 -15.82134 -15.28842 -14.73157 -14.61299 -14.47277 -14.19326 -13.82499 -13.55740 -13.25849 -13.02169 -12.92788 -12.70504 -12.56316 -12.29200 -11.96192 -11.78980 -11.64424 -11.48176 -11.38423 -10.77607 -10.18865 -9.85270 -8.81557 -8.30316 -6.33376 0.15377 0.31865 1.30647 1.33050 1.43257 2.32287 2.51611 2.76572 3.04443 3.26173 3.65443 3.80322 4.01409 4.13357 4.15394 4.27240 4.34608 4.48025 4.56507 4.63483 4.75483 4.82590 4.86823 4.99207 5.00820 5.12273 5.17197 5.22227 5.31668 5.33610 5.39350 5.52797 5.63049 5.73054 5.97616 6.24816 6.29277 6.73191 7.29679 8.86318 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017175 B = 0.009678 C = 0.007271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.909157 B = 2892.471527 C = 3850.083353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.039 3.961 3 N -0.479 5.479 4 C 0.054 3.946 5 C -0.071 4.071 6 H 0.075 0.925 7 C 0.006 3.994 8 C -0.519 4.519 9 H 0.033 0.967 10 C 0.003 3.997 11 N -0.952 5.952 12 Si 0.945 3.055 13 H -0.263 1.263 14 H -0.289 1.289 15 H -0.246 1.246 16 C -0.096 4.096 17 C -0.132 4.132 18 C 0.062 3.938 19 F -0.151 7.151 20 C -0.134 4.134 21 C -0.080 4.080 22 C 0.071 3.929 23 H 0.055 0.945 24 H 0.076 0.924 25 H 0.071 0.929 26 H 0.095 0.905 27 H 0.022 0.978 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.018 0.982 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.170 0.830 35 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 3.833 -11.826 17.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 N -0.197 5.197 4 C -0.072 4.072 5 C -0.091 4.091 6 H 0.093 0.907 7 C -0.031 4.031 8 C -0.557 4.557 9 H 0.051 0.949 10 C -0.193 4.193 11 N -0.593 5.593 12 Si 0.768 3.232 13 H -0.188 1.188 14 H -0.215 1.215 15 H -0.170 1.170 16 C -0.098 4.098 17 C -0.152 4.152 18 C 0.043 3.957 19 F -0.130 7.130 20 C -0.153 4.153 21 C -0.100 4.100 22 C -0.025 4.025 23 H 0.074 0.926 24 H 0.095 0.905 25 H 0.090 0.910 26 H 0.114 0.886 27 H 0.040 0.960 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.036 0.964 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.121 0.879 34 H 0.187 0.813 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -13.150 3.964 -12.125 18.321 hybrid contribution 1.242 -0.951 1.614 2.248 sum -11.908 3.013 -10.511 16.167 Atomic orbital electron populations 1.21872 0.92934 1.02700 1.02978 1.22470 0.97946 0.86783 1.01384 1.60575 1.15409 1.16414 1.27300 1.23360 0.84764 1.04462 0.94650 1.21414 0.96043 0.97317 0.94317 0.90672 1.19554 0.95853 0.92828 0.94872 1.21368 1.37508 0.93185 1.03603 0.94901 1.25977 0.94528 1.03619 0.95198 1.70077 1.42904 1.29817 1.16468 0.85740 0.80179 0.78675 0.78574 1.18778 1.21468 1.16993 1.20931 0.97775 0.97694 0.93423 1.20428 0.97495 1.00846 0.96418 1.17718 0.95351 1.00990 0.81660 1.91436 1.97291 1.83339 1.40916 1.21135 0.97321 1.02191 0.94608 1.20620 0.97043 0.97479 0.94819 1.19855 0.93930 0.98687 0.90044 0.92598 0.90547 0.91015 0.88636 0.96005 0.88299 0.87816 0.96407 0.95247 0.92706 0.87869 0.81295 0.81686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.78 71.98 0.70 -2.28 16 2 C 0.04 1.03 5.34 86.30 0.46 1.49 16 3 N -0.48 -13.55 5.06 -688.57 -3.49 -17.03 16 4 C 0.05 1.56 6.54 86.65 0.57 2.13 16 5 C -0.07 -2.74 2.98 -10.62 -0.03 -2.77 16 6 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 7 C 0.01 0.27 3.33 29.85 0.10 0.37 16 8 C -0.52 -29.55 9.17 25.60 0.23 -29.32 16 9 H 0.03 2.08 7.03 -2.91 -0.02 2.06 16 10 C 0.00 0.19 5.47 84.65 0.46 0.65 16 11 N -0.95 -60.36 13.96 21.45 0.30 -60.06 16 12 Si 0.94 44.04 27.47 68.60 1.88 45.92 16 13 H -0.26 -11.63 7.11 99.48 0.71 -10.92 16 14 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 15 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16 16 C -0.10 -3.71 5.31 -19.39 -0.10 -3.81 16 17 C -0.13 -5.48 9.63 22.26 0.21 -5.27 16 18 C 0.06 2.23 7.31 22.38 0.16 2.39 16 19 F -0.15 -5.54 17.27 44.97 0.78 -4.76 16 20 C -0.13 -3.67 10.00 22.25 0.22 -3.44 16 21 C -0.08 -2.11 8.55 22.47 0.19 -1.92 16 22 C 0.07 2.26 5.28 38.24 0.20 2.46 16 23 H 0.06 1.17 5.58 -2.39 -0.01 1.16 16 24 H 0.08 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.10 2.12 7.84 -2.39 -0.02 2.10 16 27 H 0.02 0.71 5.83 -2.39 -0.01 0.70 16 28 H 0.10 2.53 7.35 -2.39 -0.02 2.51 16 29 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 30 H 0.02 0.82 4.94 -2.39 -0.01 0.81 16 31 H 0.03 1.26 7.54 -2.39 -0.02 1.25 16 32 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 33 H 0.10 4.85 7.27 -2.91 -0.02 4.83 16 34 H 0.17 3.36 8.06 -2.91 -0.02 3.34 16 35 H 0.17 3.15 7.18 -2.91 -0.02 3.13 16 Total: -1.00 -67.81 282.71 3.90 -63.91 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: 1.04 Total: 11.34 kcal Atomic # 6 Polarization: -42.71 SS G_CDS: 3.39 Total: -39.32 kcal Atomic # 7 Polarization: -73.91 SS G_CDS: -3.19 Total: -77.09 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.78 Total: -4.76 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.92 kcal Total: -67.81 3.90 -63.91 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105199.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.351 kcal (2) G-P(sol) polarization free energy of solvation -67.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds