Wall clock time and date at job start Mon Mar 30 2020 07:01:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46893 * 109.47018 * 2 1 4 4 C 1.47916 * 110.99768 * 170.18192 * 3 2 1 5 5 C 1.54599 * 102.62732 * 94.51498 * 4 3 2 6 6 H 1.08997 * 110.89363 * 143.97427 * 5 4 3 7 7 C 1.53000 * 110.73007 * 267.21868 * 5 4 3 8 8 C 1.50708 * 109.46973 * 179.88796 * 7 5 4 9 9 H 1.07991 * 119.99789 * 0.02562 * 8 7 5 10 10 C 1.37877 * 120.00008 * 179.97438 * 8 7 5 11 11 N 1.31514 * 120.00089 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99938 * 0.02562 * 10 8 7 13 13 H 1.48506 * 109.47297 * 269.99556 * 12 10 8 14 14 H 1.48503 * 109.47261 * 149.99737 * 12 10 8 15 15 H 1.48500 * 109.47454 * 29.99730 * 12 10 8 16 16 C 1.51579 * 102.85654 * 25.55575 * 5 4 3 17 17 C 1.37940 * 131.52383 * 164.03919 * 16 5 4 18 18 C 1.38477 * 120.05867 * 180.24552 * 17 16 5 19 19 F 1.35105 * 120.08263 * 179.97438 * 18 17 16 20 20 C 1.38480 * 119.83556 * 359.97438 * 18 17 16 21 21 C 1.37928 * 120.23335 * 359.88568 * 20 18 17 22 22 C 1.38936 * 107.97152 * 344.03172 * 16 5 4 23 23 H 1.09006 * 109.46801 * 299.99777 * 1 2 3 24 24 H 1.08999 * 109.47301 * 59.99874 * 1 2 3 25 25 H 1.09005 * 109.47067 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46801 * 240.00222 * 2 1 3 27 27 H 1.08999 * 109.47301 * 120.00126 * 2 1 3 28 28 H 1.08991 * 110.77803 * 336.22498 * 4 3 2 29 29 H 1.09005 * 110.77472 * 212.79403 * 4 3 2 30 30 H 1.08994 * 109.48028 * 59.88853 * 7 5 4 31 31 H 1.09000 * 109.47206 * 299.88707 * 7 5 4 32 32 H 0.96997 * 119.99848 * 180.02562 * 11 10 8 33 33 H 1.07994 * 119.97150 * 0.26196 * 17 16 5 34 34 H 1.07999 * 119.88547 * 179.89734 * 20 18 17 35 35 H 1.08003 * 119.88340 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4792 1.4311 0.2355 5 6 4.0519 1.4747 -1.1999 6 1 4.9398 2.1053 -1.2451 7 6 4.3660 0.0635 -1.7007 8 6 4.9189 0.1388 -3.1007 9 1 5.0351 1.0973 -3.5845 10 6 5.2774 -1.0159 -3.7633 11 7 5.7604 -0.9502 -4.9848 12 14 5.0772 -2.6737 -2.9261 13 1 6.3205 -3.0080 -2.1860 14 1 4.8150 -3.7169 -3.9500 15 1 3.9368 -2.6143 -1.9767 16 6 2.9174 2.0870 -1.9972 17 6 2.8848 2.6527 -3.2548 18 6 1.6965 3.1532 -3.7597 19 9 1.6641 3.7079 -4.9912 20 6 0.5413 3.0838 -2.9991 21 6 0.5703 2.5161 -1.7424 22 6 1.7625 2.0088 -1.2289 23 1 -0.3633 0.5138 0.8901 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5138 0.8900 28 1 3.8149 0.5359 0.7588 29 1 3.7533 2.3295 0.7886 30 1 3.4538 -0.5331 -1.7020 31 1 5.1021 -0.3998 -1.0437 32 1 6.0123 -1.7626 -5.4511 33 1 3.7868 2.7051 -3.8464 34 1 -0.3856 3.4754 -3.3914 35 1 -0.3339 2.4653 -1.1539 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260105202.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:44 Heat of formation + Delta-G solvation = -28.750630 kcal Electronic energy + Delta-G solvation = -18525.121448 eV Core-core repulsion = 15629.704413 eV Total energy + Delta-G solvation = -2895.417035 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.84464 -41.96347 -37.66862 -35.77231 -34.20707 -31.80051 -31.23825 -29.87463 -28.16554 -24.65452 -24.04597 -23.62544 -21.86549 -21.19518 -18.91654 -18.13529 -17.66428 -17.24236 -16.72822 -16.45438 -15.92421 -15.82440 -15.31214 -14.70889 -14.58940 -14.44648 -14.18956 -13.83138 -13.56166 -13.24434 -13.01528 -12.92040 -12.70016 -12.57000 -12.29118 -11.95140 -11.79364 -11.63749 -11.48703 -11.34488 -10.76809 -10.17338 -9.83801 -8.80337 -8.29314 -6.32193 0.16330 0.33068 1.30966 1.33179 1.43358 2.32833 2.51819 2.78001 3.05578 3.27371 3.66630 3.81038 4.02129 4.13364 4.16017 4.28498 4.35053 4.48490 4.57059 4.63715 4.75067 4.82812 4.87815 4.99507 5.01235 5.12605 5.18064 5.23371 5.31798 5.34245 5.39794 5.54142 5.63689 5.73868 5.98353 6.26073 6.30337 6.74777 7.30761 8.87233 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017098 B = 0.009852 C = 0.007364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1637.230165 B = 2841.241218 C = 3801.286731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.039 3.961 3 N -0.479 5.479 4 C 0.055 3.945 5 C -0.072 4.072 6 H 0.076 0.924 7 C 0.004 3.996 8 C -0.518 4.518 9 H 0.036 0.964 10 C 0.003 3.997 11 N -0.952 5.952 12 Si 0.944 3.056 13 H -0.264 1.264 14 H -0.289 1.289 15 H -0.246 1.246 16 C -0.094 4.094 17 C -0.130 4.130 18 C 0.061 3.939 19 F -0.152 7.152 20 C -0.134 4.134 21 C -0.081 4.081 22 C 0.071 3.929 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.071 0.929 26 H 0.022 0.978 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.104 0.896 30 H 0.020 0.980 31 H 0.029 0.971 32 H 0.264 0.736 33 H 0.103 0.897 34 H 0.169 0.831 35 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.051 3.913 12.237 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.086 4.086 3 N -0.197 5.197 4 C -0.072 4.072 5 C -0.092 4.092 6 H 0.094 0.906 7 C -0.033 4.033 8 C -0.556 4.556 9 H 0.054 0.946 10 C -0.193 4.193 11 N -0.593 5.593 12 Si 0.768 3.232 13 H -0.189 1.189 14 H -0.215 1.215 15 H -0.169 1.169 16 C -0.096 4.096 17 C -0.150 4.150 18 C 0.042 3.958 19 F -0.130 7.130 20 C -0.153 4.153 21 C -0.101 4.101 22 C -0.026 4.026 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.114 0.886 28 H 0.117 0.883 29 H 0.122 0.878 30 H 0.038 0.962 31 H 0.047 0.953 32 H 0.072 0.928 33 H 0.121 0.879 34 H 0.186 0.814 35 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -12.261 4.042 12.533 17.993 hybrid contribution 1.224 -0.969 -1.628 2.256 sum -11.037 3.072 10.904 15.817 Atomic orbital electron populations 1.21879 0.92988 1.02685 1.02967 1.22480 0.97921 0.86817 1.01384 1.60560 1.15353 1.16321 1.27498 1.23356 0.84760 1.04453 0.94595 1.21367 0.96138 0.97301 0.94365 0.90597 1.19581 0.96134 0.92844 0.94774 1.21402 1.41005 0.93529 0.99711 0.94593 1.25968 0.94525 1.03508 0.95318 1.70074 1.45706 1.29686 1.13860 0.85752 0.80042 0.78706 0.78735 1.18897 1.21534 1.16917 1.20841 0.97840 0.97578 0.93344 1.20429 0.97418 1.00799 0.96339 1.17732 0.95385 1.01147 0.81585 1.91435 1.97286 1.83483 1.40838 1.21127 0.97337 1.02263 0.94599 1.20614 0.96996 0.97643 0.94799 1.19852 0.93926 0.98700 0.90072 0.90531 0.92625 0.91039 0.95971 0.88612 0.88263 0.87758 0.96187 0.95295 0.92750 0.87880 0.81364 0.81728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.77 71.98 0.70 -2.34 16 2 C 0.04 1.03 5.31 86.30 0.46 1.49 16 3 N -0.48 -13.62 5.06 -688.55 -3.49 -17.11 16 4 C 0.06 1.57 6.56 86.65 0.57 2.14 16 5 C -0.07 -2.76 3.02 -10.72 -0.03 -2.79 16 6 H 0.08 2.98 8.14 -2.39 -0.02 2.96 16 7 C 0.00 0.17 3.40 29.85 0.10 0.27 16 8 C -0.52 -29.43 9.05 25.60 0.23 -29.20 16 9 H 0.04 2.26 6.45 -2.92 -0.02 2.24 16 10 C 0.00 0.18 5.47 84.65 0.46 0.65 16 11 N -0.95 -60.38 13.96 21.45 0.30 -60.09 16 12 Si 0.94 43.99 27.47 68.60 1.88 45.88 16 13 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 14 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 15 H -0.25 -10.49 6.54 99.48 0.65 -9.84 16 16 C -0.09 -3.64 5.25 -19.49 -0.10 -3.75 16 17 C -0.13 -5.46 9.36 22.26 0.21 -5.25 16 18 C 0.06 2.22 7.31 22.38 0.16 2.38 16 19 F -0.15 -5.66 17.27 44.97 0.78 -4.88 16 20 C -0.13 -3.76 10.00 22.25 0.22 -3.54 16 21 C -0.08 -2.17 8.53 22.47 0.19 -1.98 16 22 C 0.07 2.27 5.29 38.24 0.20 2.47 16 23 H 0.08 1.35 8.14 -2.38 -0.02 1.33 16 24 H 0.05 1.19 5.55 -2.39 -0.01 1.18 16 25 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 26 H 0.02 0.73 5.73 -2.38 -0.01 0.72 16 27 H 0.10 2.14 7.85 -2.39 -0.02 2.12 16 28 H 0.10 2.52 7.37 -2.39 -0.02 2.50 16 29 H 0.10 2.56 8.14 -2.38 -0.02 2.54 16 30 H 0.02 0.91 4.77 -2.39 -0.01 0.90 16 31 H 0.03 1.24 7.57 -2.39 -0.02 1.22 16 32 H 0.26 15.69 8.31 -92.71 -0.77 14.92 16 33 H 0.10 4.90 6.98 -2.91 -0.02 4.88 16 34 H 0.17 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.17 3.22 7.16 -2.91 -0.02 3.20 16 Total: -1.00 -67.74 281.20 3.89 -63.85 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.04 Total: 11.79 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.38 Total: -39.44 kcal Atomic # 7 Polarization: -74.01 SS G_CDS: -3.19 Total: -77.19 kcal Atomic # 9 Polarization: -5.66 SS G_CDS: 0.78 Total: -4.88 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 1.88 Total: 45.88 kcal Total: -67.74 3.89 -63.85 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260105202.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.100 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.894 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.851 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds