Wall clock time and date at job start Mon Mar 30 2020 06:38:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47187 * 2 1 4 4 N 1.46899 * 109.47362 * 119.99720 * 2 1 3 5 5 C 1.40037 * 111.00515 * 268.58788 * 4 2 1 6 6 C 1.39431 * 129.93421 * 39.91774 * 5 4 2 7 7 C 1.37916 * 120.24832 * 179.31722 * 6 5 4 8 8 C 1.38264 * 120.29227 * 0.02577 * 7 6 5 9 9 C 1.38540 * 119.85706 * 0.09562 * 8 7 6 10 10 F 1.35101 * 119.98887 * 180.02562 * 9 8 7 11 11 C 1.38133 * 120.02680 * 0.04760 * 9 8 7 12 12 C 1.51577 * 131.57252 * 179.29605 * 11 9 8 13 13 C 1.47916 * 111.00209 * 148.64409 * 4 2 1 14 14 H 1.09000 * 110.78245 * 267.47979 * 13 4 2 15 15 C 1.50707 * 110.78035 * 30.72497 * 13 4 2 16 16 H 1.08007 * 119.99777 * 3.38516 * 15 13 4 17 17 C 1.37873 * 120.00113 * 183.38270 * 15 13 4 18 18 N 1.31509 * 120.00149 * 180.02562 * 17 15 13 19 19 Si 1.86804 * 119.99885 * 359.97438 * 17 15 13 20 20 H 1.48504 * 109.47046 * 90.00061 * 19 17 15 21 21 H 1.48495 * 109.47070 * 209.99886 * 19 17 15 22 22 H 1.48500 * 109.47086 * 330.00136 * 19 17 15 23 23 H 1.08998 * 109.47243 * 304.89580 * 1 2 3 24 24 H 1.08996 * 109.47134 * 64.89745 * 1 2 3 25 25 H 1.09002 * 109.46796 * 184.89447 * 1 2 3 26 26 H 1.08995 * 109.47351 * 240.00191 * 2 1 3 27 27 H 1.08991 * 109.47523 * 158.95243 * 3 2 1 28 28 H 1.08997 * 109.47346 * 278.95807 * 3 2 1 29 29 H 1.09006 * 109.46789 * 38.95571 * 3 2 1 30 30 H 1.08001 * 119.87236 * 359.30160 * 6 5 4 31 31 H 1.08003 * 119.85301 * 179.97438 * 7 6 5 32 32 H 1.08000 * 120.07196 * 180.09979 * 8 7 6 33 33 H 1.09003 * 110.73657 * 314.45345 * 12 11 9 34 34 H 1.09001 * 110.73691 * 77.76697 * 12 11 9 35 35 H 0.97005 * 120.00412 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6924 1.1994 5 6 2.2174 0.2082 2.2534 6 6 1.4488 1.3006 2.6533 7 6 1.8274 2.0544 3.7444 8 6 2.9722 1.7335 4.4504 9 6 3.7433 0.6512 4.0587 10 9 4.8621 0.3350 4.7469 11 6 3.3691 -0.1044 2.9646 12 6 4.0107 -1.3108 2.3085 13 6 3.3082 -1.3681 0.9326 14 1 3.1467 -2.4007 0.6234 15 6 4.0997 -0.6183 -0.1079 16 1 3.7233 0.3128 -0.5054 17 6 5.3042 -1.1208 -0.5523 18 7 5.9951 -0.4663 -1.4599 19 14 5.9555 -2.7308 0.1358 20 1 5.4619 -3.8594 -0.6936 21 1 7.4402 -2.7134 0.1149 22 1 5.4820 -2.8994 1.5332 23 1 -0.3633 0.5879 0.8429 24 1 -0.3633 0.4360 -0.9306 25 1 -0.3633 -1.0240 0.0877 26 1 1.8933 -0.5138 -0.8899 27 1 3.0653 1.4655 0.3690 28 1 2.0103 1.8385 -1.0151 29 1 1.4076 2.0515 0.6462 30 1 0.5538 1.5577 2.1063 31 1 1.2276 2.8995 4.0483 32 1 3.2645 2.3252 5.3053 33 1 5.0835 -1.1599 2.1883 34 1 3.8091 -2.2152 2.8827 35 1 6.8427 -0.8197 -1.7724 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122025.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:55 Heat of formation + Delta-G solvation = -8.701634 kcal Electronic energy + Delta-G solvation = -19046.303700 eV Core-core repulsion = 16151.756054 eV Total energy + Delta-G solvation = -2894.547645 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.80553 -41.99417 -37.93122 -35.66423 -34.41676 -31.32262 -30.71047 -29.54471 -28.21543 -26.59772 -23.50312 -22.94938 -22.30959 -20.92533 -18.95795 -18.02199 -17.62947 -16.79027 -16.73903 -16.44504 -16.06017 -15.52285 -15.37269 -14.80482 -14.44280 -14.01420 -13.98398 -13.67779 -13.38595 -13.24679 -12.82850 -12.79306 -12.57182 -12.44927 -12.38115 -12.16799 -12.02921 -11.59051 -11.31289 -11.05472 -10.77731 -10.51922 -9.47591 -8.55673 -8.31092 -6.37191 0.32915 0.43839 1.30151 1.36076 1.43456 2.31730 2.63807 2.97829 3.15160 3.43391 3.68450 3.96193 4.09021 4.15499 4.34319 4.39006 4.46666 4.53816 4.60656 4.65204 4.81984 4.89698 5.00389 5.04355 5.05935 5.10633 5.25137 5.30132 5.31162 5.44475 5.48798 5.54761 5.59629 5.92672 6.16426 6.23538 6.48899 6.73532 7.29969 8.81532 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018865 B = 0.011517 C = 0.008314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.866342 B = 2430.647037 C = 3367.081596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.078 3.922 3 C -0.170 4.170 4 N -0.471 5.471 5 C 0.139 3.861 6 C -0.156 4.156 7 C -0.064 4.064 8 C -0.187 4.187 9 C 0.103 3.897 10 F -0.156 7.156 11 C -0.199 4.199 12 C -0.082 4.082 13 C 0.179 3.821 14 H 0.055 0.945 15 C -0.548 4.548 16 H 0.086 0.914 17 C 0.029 3.971 18 N -0.937 5.937 19 Si 0.911 3.089 20 H -0.270 1.270 21 H -0.292 1.292 22 H -0.229 1.229 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.057 0.943 26 H 0.068 0.932 27 H 0.041 0.959 28 H 0.051 0.949 29 H 0.083 0.917 30 H 0.151 0.849 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.055 0.945 34 H 0.070 0.930 35 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.778 3.616 8.845 14.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.029 4.029 3 C -0.227 4.227 4 N -0.183 5.183 5 C 0.039 3.961 6 C -0.176 4.176 7 C -0.082 4.082 8 C -0.206 4.206 9 C 0.083 3.917 10 F -0.135 7.135 11 C -0.202 4.202 12 C -0.120 4.120 13 C 0.073 3.927 14 H 0.073 0.927 15 C -0.586 4.586 16 H 0.103 0.897 17 C -0.170 4.170 18 N -0.577 5.577 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.219 1.219 22 H -0.152 1.152 23 H 0.086 0.914 24 H 0.092 0.908 25 H 0.076 0.924 26 H 0.086 0.914 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.102 0.898 30 H 0.168 0.832 31 H 0.193 0.807 32 H 0.175 0.825 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.988 3.152 8.795 14.423 hybrid contribution 2.015 -0.606 -0.334 2.131 sum -8.973 2.547 8.461 12.593 Atomic orbital electron populations 1.21868 0.92184 1.02421 1.02518 1.21741 0.96325 0.93297 0.91498 1.22682 1.00973 0.97134 1.01932 1.60869 1.26872 1.24617 1.05968 1.19675 0.92208 0.91233 0.92950 1.21002 1.02097 0.94617 0.99923 1.21110 0.95117 0.99274 0.92686 1.21203 0.97417 0.97764 1.04255 1.17475 0.84898 0.97324 0.91997 1.91402 1.50739 1.92842 1.78507 1.20722 0.99206 1.01304 0.99002 1.21729 0.99336 0.94406 0.96512 1.20633 0.84474 0.95431 0.92201 0.92719 1.22084 1.04985 1.09776 1.21742 0.89673 1.25613 0.96872 0.99999 0.94565 1.70008 1.15198 1.40921 1.31547 0.86417 0.77463 0.80919 0.81711 1.19548 1.21873 1.15220 0.91414 0.90830 0.92354 0.91369 0.94034 0.92960 0.89825 0.83164 0.80731 0.82506 0.92610 0.91174 0.92607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.56 9.34 71.98 0.67 -2.88 16 2 C 0.08 2.83 2.34 44.92 0.11 2.94 16 3 C -0.17 -6.13 6.77 71.98 0.49 -5.64 16 4 N -0.47 -18.84 4.90 -645.54 -3.16 -22.00 16 5 C 0.14 5.24 4.46 38.28 0.17 5.41 16 6 C -0.16 -4.50 7.48 22.48 0.17 -4.33 16 7 C -0.06 -1.54 10.02 22.20 0.22 -1.32 16 8 C -0.19 -5.29 10.04 22.35 0.22 -5.06 16 9 C 0.10 3.81 7.29 22.32 0.16 3.97 16 10 F -0.16 -6.01 17.27 44.97 0.78 -5.24 16 11 C -0.20 -8.21 6.20 -19.45 -0.12 -8.33 16 12 C -0.08 -3.66 4.69 30.67 0.14 -3.51 16 13 C 0.18 8.27 2.59 44.52 0.12 8.38 16 14 H 0.06 2.53 7.26 -2.39 -0.02 2.51 16 15 C -0.55 -29.34 7.27 25.60 0.19 -29.15 16 16 H 0.09 4.82 4.03 -2.91 -0.01 4.80 16 17 C 0.03 1.61 5.40 84.65 0.46 2.07 16 18 N -0.94 -56.77 13.96 21.45 0.30 -56.48 16 19 Si 0.91 42.75 26.06 68.60 1.79 44.54 16 20 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 21 H -0.29 -13.94 7.11 99.48 0.71 -13.24 16 22 H -0.23 -9.96 5.08 99.48 0.51 -9.45 16 23 H 0.07 1.57 5.98 -2.39 -0.01 1.56 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 2.90 6.79 -2.39 -0.02 2.88 16 27 H 0.04 1.86 5.33 -2.39 -0.01 1.85 16 28 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 2.44 5.04 -2.38 -0.01 2.43 16 30 H 0.15 3.54 4.90 -2.91 -0.01 3.52 16 31 H 0.18 2.59 8.06 -2.91 -0.02 2.57 16 32 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 33 H 0.06 2.70 5.87 -2.39 -0.01 2.68 16 34 H 0.07 2.91 8.13 -2.39 -0.02 2.89 16 35 H 0.26 15.23 8.31 -92.70 -0.77 14.46 16 Total: -1.00 -63.93 267.55 3.61 -60.32 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.91 Total: 16.32 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.00 Total: -37.47 kcal Atomic # 7 Polarization: -75.61 SS G_CDS: -2.86 Total: -78.47 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.79 Total: 44.54 kcal Total: -63.93 3.61 -60.32 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122025.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.619 kcal (2) G-P(sol) polarization free energy of solvation -63.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds