Wall clock time and date at job start Mon Mar 30 2020 06:39:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 N 1.46902 * 109.47515 * 120.00041 * 2 1 3 5 5 C 1.40526 * 111.18693 * 331.60739 * 4 2 1 6 6 C 1.39422 * 129.88003 * 319.68047 * 5 4 2 7 7 C 1.37918 * 120.25182 * 180.73955 * 6 5 4 8 8 C 1.38264 * 120.29332 * 0.03691 * 7 6 5 9 9 C 1.38535 * 119.85348 * 359.85911 * 8 7 6 10 10 F 1.35091 * 119.99011 * 180.02562 * 9 8 7 11 11 C 1.38138 * 120.02478 * 359.97438 * 9 8 7 12 12 C 1.51579 * 131.55941 * 180.27441 * 11 9 8 13 13 C 1.47907 * 110.99970 * 91.38068 * 4 2 1 14 14 H 1.09004 * 110.77482 * 92.43531 * 13 4 2 15 15 C 1.50694 * 110.78008 * 329.19422 * 13 4 2 16 16 H 1.07992 * 120.00560 * 1.97017 * 15 13 4 17 17 C 1.37885 * 119.99617 * 181.97375 * 15 13 4 18 18 N 1.31512 * 120.00114 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99621 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46803 * 269.99378 * 19 17 15 21 21 H 1.48491 * 109.47693 * 29.99554 * 19 17 15 22 22 H 1.48505 * 109.47282 * 149.99923 * 19 17 15 23 23 H 1.09008 * 109.46981 * 319.43038 * 1 2 3 24 24 H 1.08994 * 109.47360 * 79.43832 * 1 2 3 25 25 H 1.09005 * 109.46594 * 199.43633 * 1 2 3 26 26 H 1.08999 * 109.47045 * 240.00457 * 2 1 3 27 27 H 1.08993 * 109.47357 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47008 * 300.00600 * 3 2 1 29 29 H 1.09003 * 109.47146 * 59.99924 * 3 2 1 30 30 H 1.07999 * 119.87246 * 0.73851 * 6 5 4 31 31 H 1.08004 * 119.85266 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.07721 * 179.82717 * 8 7 6 33 33 H 1.08997 * 110.73912 * 45.69602 * 12 11 9 34 34 H 1.09007 * 110.89399 * 282.43773 * 12 11 9 35 35 H 0.96995 * 120.00071 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.1024 -0.5845 2.2584 6 6 0.3311 0.5032 2.6655 7 6 -0.5048 0.3926 3.7570 8 6 -0.5842 -0.7971 4.4569 9 6 0.1769 -1.8838 4.0583 10 9 0.1010 -3.0478 4.7398 11 6 1.0127 -1.7780 2.9635 12 6 1.9402 -2.7805 2.3059 13 6 2.2279 -2.1323 0.9323 14 1 3.2551 -2.3234 0.6218 15 6 1.2562 -2.6292 -0.1068 16 1 0.5597 -1.9437 -0.5665 17 6 1.2564 -3.9592 -0.4707 18 7 2.1049 -4.7938 0.0887 19 14 0.0524 -4.5750 -1.7594 20 1 -1.2016 -5.0134 -1.0957 21 1 -0.2506 -3.4810 -2.7167 22 1 0.6522 -5.7202 -2.4901 23 1 -0.3633 0.7807 0.6684 24 1 -0.3634 0.1884 -1.0102 25 1 -0.3633 -0.9692 0.3420 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.3883 1.4360 2.1241 31 1 -1.0997 1.2392 4.0665 32 1 -1.2378 -0.8790 5.3127 33 1 1.4436 -3.7429 2.1829 34 1 2.8604 -2.8930 2.8792 35 1 2.7303 -4.4740 0.7576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260122030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:39:00 Heat of formation + Delta-G solvation = -2.241759 kcal Electronic energy + Delta-G solvation = -19060.936930 eV Core-core repulsion = 16166.669406 eV Total energy + Delta-G solvation = -2894.267524 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.30353 -40.41949 -36.53615 -34.27557 -32.46965 -29.84683 -28.80655 -27.42522 -26.92856 -24.60886 -22.08855 -21.67387 -20.48933 -19.59246 -17.24797 -16.56868 -15.82200 -15.41643 -15.14663 -14.87564 -14.23465 -13.97676 -13.79849 -13.18861 -12.90586 -12.53802 -12.36706 -12.15895 -11.78139 -11.57679 -11.26705 -11.16056 -10.90650 -10.82621 -10.67997 -10.48684 -10.26925 -10.19263 -9.87989 -9.46138 -8.66151 -8.50661 -8.03012 -7.03402 -6.45336 -4.27300 1.72085 1.81026 3.36289 3.37434 3.52824 4.03583 4.40859 4.57097 4.85821 5.16147 5.20194 5.30856 5.42242 5.59737 5.69121 5.71866 5.87783 5.98609 6.04656 6.11521 6.21131 6.34991 6.40638 6.42584 6.58015 6.58340 6.69237 6.76393 6.88413 6.96071 6.99781 7.14554 7.38623 7.57698 7.92678 8.05151 8.30340 8.66251 9.45557 10.86423 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.010834 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.632950 B = 2583.848366 C = 3392.145482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.082 3.918 3 C -0.143 4.143 4 N -0.473 5.473 5 C 0.157 3.843 6 C -0.162 4.162 7 C -0.082 4.082 8 C -0.197 4.197 9 C 0.125 3.875 10 F -0.146 7.146 11 C -0.157 4.157 12 C -0.083 4.083 13 C 0.199 3.801 14 H 0.051 0.949 15 C -0.633 4.633 16 H 0.079 0.921 17 C 0.030 3.970 18 N -0.903 5.903 19 Si 1.066 2.934 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.283 1.283 23 H 0.056 0.944 24 H 0.048 0.952 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.126 0.874 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.593 9.751 3.334 10.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.025 4.025 3 C -0.201 4.201 4 N -0.185 5.185 5 C 0.056 3.944 6 C -0.183 4.183 7 C -0.100 4.100 8 C -0.217 4.217 9 C 0.105 3.895 10 F -0.125 7.125 11 C -0.161 4.161 12 C -0.121 4.121 13 C 0.094 3.906 14 H 0.069 0.931 15 C -0.671 4.671 16 H 0.097 0.903 17 C -0.177 4.177 18 N -0.537 5.537 19 Si 0.894 3.106 20 H -0.214 1.214 21 H -0.213 1.213 22 H -0.208 1.208 23 H 0.075 0.925 24 H 0.068 0.932 25 H 0.100 0.900 26 H 0.115 0.885 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.141 0.859 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.105 0.895 34 H 0.075 0.925 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.502 8.576 2.546 9.607 hybrid contribution -0.174 0.792 0.870 1.190 sum -3.675 9.368 3.416 10.627 Atomic orbital electron populations 1.22852 0.96562 1.03473 1.01212 1.21669 0.93747 0.93635 0.93403 1.21945 1.01312 0.96119 1.00706 1.60971 1.37088 1.15563 1.04922 1.19581 0.89068 0.92285 0.93424 1.20588 0.99859 0.98345 0.99540 1.20513 0.98305 0.96635 0.94586 1.20746 1.04159 0.93138 1.03696 1.17105 0.98573 0.81905 0.91926 1.91432 1.95342 1.47008 1.78716 1.20692 1.00754 0.97647 0.97024 1.21602 0.95781 0.98448 0.96255 1.20529 0.98068 0.79471 0.92529 0.93106 1.22703 1.21820 0.97829 1.24755 0.90344 1.25738 0.99031 0.93196 0.99701 1.70765 1.19007 1.37862 1.26109 0.83570 0.75474 0.75896 0.75649 1.21355 1.21329 1.20826 0.92541 0.93249 0.89951 0.88469 0.92564 0.92842 0.93129 0.85878 0.85743 0.85651 0.89454 0.92473 0.91538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.30 6.80 37.16 0.25 -3.05 16 2 C 0.08 1.54 2.34 -67.71 -0.16 1.38 16 3 C -0.14 -2.17 9.33 37.16 0.35 -1.82 16 4 N -0.47 -9.94 4.92 -155.26 -0.76 -10.71 16 5 C 0.16 3.17 4.50 -83.18 -0.37 2.80 16 6 C -0.16 -2.74 7.45 -39.26 -0.29 -3.03 16 7 C -0.08 -1.24 10.02 -39.69 -0.40 -1.63 16 8 C -0.20 -3.27 10.04 -39.46 -0.40 -3.66 16 9 C 0.12 2.49 7.29 -39.51 -0.29 2.20 16 10 F -0.15 -2.99 17.26 2.25 0.04 -2.95 16 11 C -0.16 -3.43 6.20 -103.98 -0.64 -4.07 16 12 C -0.08 -1.95 5.55 -26.62 -0.15 -2.10 16 13 C 0.20 4.77 2.73 -67.48 -0.18 4.58 16 14 H 0.05 1.30 7.98 -51.93 -0.41 0.89 16 15 C -0.63 -16.18 6.74 -34.44 -0.23 -16.41 16 16 H 0.08 1.95 3.81 -52.49 -0.20 1.75 16 17 C 0.03 0.80 5.13 -17.82 -0.09 0.70 16 18 N -0.90 -25.64 13.02 55.43 0.72 -24.91 16 19 Si 1.07 24.17 29.90 -169.99 -5.08 19.09 16 20 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H 0.06 0.90 5.02 -51.92 -0.26 0.64 16 24 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.08 1.76 5.41 -51.93 -0.28 1.48 16 26 H 0.10 2.01 6.73 -51.93 -0.35 1.66 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.05 0.72 6.08 -51.93 -0.32 0.41 16 30 H 0.12 1.83 5.00 -52.49 -0.26 1.57 16 31 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 32 H 0.13 1.74 8.06 -52.49 -0.42 1.31 16 33 H 0.09 2.28 6.61 -51.93 -0.34 1.94 16 34 H 0.06 1.28 8.14 -51.92 -0.42 0.86 16 35 H 0.27 7.67 6.13 -40.82 -0.25 7.42 16 LS Contribution 271.99 15.07 4.10 4.10 Total: -1.00 -27.69 271.99 -7.60 -35.29 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -4.01 Total: 4.21 kcal Atomic # 6 Polarization: -21.51 SS G_CDS: -2.61 Total: -24.11 kcal Atomic # 7 Polarization: -35.58 SS G_CDS: -0.04 Total: -35.62 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.04 Total: -2.95 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.09 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.69 -7.60 -35.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.050 kcal (2) G-P(sol) polarization free energy of solvation -27.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds