Wall clock time and date at job start Mon Mar 30 2020 06:38:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46993 * 2 1 4 4 N 1.46902 * 109.47515 * 120.00041 * 2 1 3 5 5 C 1.40526 * 111.18693 * 331.60739 * 4 2 1 6 6 C 1.39422 * 129.88003 * 319.68047 * 5 4 2 7 7 C 1.37918 * 120.25182 * 180.73955 * 6 5 4 8 8 C 1.38264 * 120.29332 * 0.03691 * 7 6 5 9 9 C 1.38535 * 119.85348 * 359.85911 * 8 7 6 10 10 F 1.35091 * 119.99011 * 180.02562 * 9 8 7 11 11 C 1.38138 * 120.02478 * 359.97438 * 9 8 7 12 12 C 1.51579 * 131.55941 * 180.27441 * 11 9 8 13 13 C 1.47907 * 110.99970 * 91.38068 * 4 2 1 14 14 H 1.09004 * 110.77482 * 92.43531 * 13 4 2 15 15 C 1.50694 * 110.78008 * 329.19422 * 13 4 2 16 16 H 1.07992 * 120.00560 * 1.97017 * 15 13 4 17 17 C 1.37885 * 119.99617 * 181.97375 * 15 13 4 18 18 N 1.31512 * 120.00114 * 359.97438 * 17 15 13 19 19 Si 1.86799 * 119.99621 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.46803 * 269.99378 * 19 17 15 21 21 H 1.48491 * 109.47693 * 29.99554 * 19 17 15 22 22 H 1.48505 * 109.47282 * 149.99923 * 19 17 15 23 23 H 1.09008 * 109.46981 * 319.43038 * 1 2 3 24 24 H 1.08994 * 109.47360 * 79.43832 * 1 2 3 25 25 H 1.09005 * 109.46594 * 199.43633 * 1 2 3 26 26 H 1.08999 * 109.47045 * 240.00457 * 2 1 3 27 27 H 1.08993 * 109.47357 * 179.97438 * 3 2 1 28 28 H 1.09004 * 109.47008 * 300.00600 * 3 2 1 29 29 H 1.09003 * 109.47146 * 59.99924 * 3 2 1 30 30 H 1.07999 * 119.87246 * 0.73851 * 6 5 4 31 31 H 1.08004 * 119.85266 * 180.02562 * 7 6 5 32 32 H 1.07999 * 120.07721 * 179.82717 * 8 7 6 33 33 H 1.08997 * 110.73912 * 45.69602 * 12 11 9 34 34 H 1.09007 * 110.89399 * 282.43773 * 12 11 9 35 35 H 0.96995 * 120.00071 * 0.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0198 -0.6925 1.1994 5 6 1.1024 -0.5845 2.2584 6 6 0.3311 0.5032 2.6655 7 6 -0.5048 0.3926 3.7570 8 6 -0.5842 -0.7971 4.4569 9 6 0.1769 -1.8838 4.0583 10 9 0.1010 -3.0478 4.7398 11 6 1.0127 -1.7780 2.9635 12 6 1.9402 -2.7805 2.3059 13 6 2.2279 -2.1323 0.9323 14 1 3.2551 -2.3234 0.6218 15 6 1.2562 -2.6292 -0.1068 16 1 0.5597 -1.9437 -0.5665 17 6 1.2564 -3.9592 -0.4707 18 7 2.1049 -4.7938 0.0887 19 14 0.0524 -4.5750 -1.7594 20 1 -1.2016 -5.0134 -1.0957 21 1 -0.2506 -3.4810 -2.7167 22 1 0.6522 -5.7202 -2.4901 23 1 -0.3633 0.7807 0.6684 24 1 -0.3634 0.1884 -1.0102 25 1 -0.3633 -0.9692 0.3420 26 1 1.8933 -0.5138 -0.8900 27 1 3.1299 1.4426 0.0005 28 1 1.6765 1.9564 -0.8900 29 1 1.6766 1.9564 0.8900 30 1 0.3883 1.4360 2.1241 31 1 -1.0997 1.2392 4.0665 32 1 -1.2378 -0.8790 5.3127 33 1 1.4436 -3.7429 2.1829 34 1 2.8604 -2.8930 2.8792 35 1 2.7303 -4.4740 0.7576 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260122030.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:59 Heat of formation + Delta-G solvation = -18.129298 kcal Electronic energy + Delta-G solvation = -19061.625866 eV Core-core repulsion = 16166.669406 eV Total energy + Delta-G solvation = -2894.956459 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -49.85758 -41.98948 -38.00344 -35.95270 -34.28798 -31.28826 -30.36358 -29.10173 -28.32148 -26.47593 -23.59665 -23.21277 -22.21688 -21.07610 -19.13793 -18.08927 -17.41996 -16.88167 -16.66345 -16.43185 -15.91708 -15.59425 -15.51590 -14.67776 -14.48489 -14.04570 -13.90630 -13.56319 -13.29679 -13.19637 -12.80959 -12.79421 -12.49937 -12.45745 -12.21048 -12.12934 -11.99539 -11.89930 -11.33192 -11.08706 -10.59074 -10.36351 -9.51952 -8.74931 -8.44863 -6.38632 0.27916 0.39842 1.49203 1.56279 1.72589 2.51607 2.61508 3.03869 3.16917 3.39510 3.65272 3.93899 4.06775 4.12656 4.31482 4.34590 4.43047 4.50404 4.58729 4.62000 4.78468 4.88779 4.96434 5.03635 5.06501 5.09225 5.22543 5.26737 5.28873 5.42341 5.47941 5.55032 5.76623 5.91270 6.08228 6.32206 6.45082 6.55669 7.42262 8.73803 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018679 B = 0.010834 C = 0.008252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.632950 B = 2583.848366 C = 3392.145482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.076 3.924 3 C -0.133 4.133 4 N -0.478 5.478 5 C 0.140 3.860 6 C -0.154 4.154 7 C -0.061 4.061 8 C -0.185 4.185 9 C 0.100 3.900 10 F -0.158 7.158 11 C -0.198 4.198 12 C -0.075 4.075 13 C 0.198 3.802 14 H 0.019 0.981 15 C -0.626 4.626 16 H 0.088 0.912 17 C -0.023 4.023 18 N -0.934 5.934 19 Si 1.108 2.892 20 H -0.282 1.282 21 H -0.264 1.264 22 H -0.285 1.285 23 H 0.083 0.917 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.067 0.933 27 H 0.050 0.950 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.153 0.847 31 H 0.179 0.821 32 H 0.159 0.841 33 H 0.049 0.951 34 H 0.049 0.951 35 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.025 13.280 3.655 15.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.031 4.031 3 C -0.190 4.190 4 N -0.190 5.190 5 C 0.040 3.960 6 C -0.175 4.175 7 C -0.079 4.079 8 C -0.204 4.204 9 C 0.080 3.920 10 F -0.137 7.137 11 C -0.201 4.201 12 C -0.114 4.114 13 C 0.092 3.908 14 H 0.037 0.963 15 C -0.664 4.664 16 H 0.106 0.894 17 C -0.223 4.223 18 N -0.571 5.571 19 Si 0.931 3.069 20 H -0.208 1.208 21 H -0.188 1.188 22 H -0.211 1.211 23 H 0.102 0.898 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.170 0.830 31 H 0.196 0.804 32 H 0.177 0.823 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.937 12.137 2.877 13.814 hybrid contribution 0.564 -0.220 0.858 1.050 sum -5.373 11.917 3.734 13.595 Atomic orbital electron populations 1.22725 0.95665 1.02186 1.02662 1.21780 0.94533 0.95403 0.91350 1.21861 1.01029 0.93416 1.02709 1.60984 1.38494 1.13299 1.06251 1.19792 0.90124 0.93077 0.92990 1.20993 0.98505 0.98024 0.99975 1.21138 0.96881 0.97358 0.92566 1.21211 1.02826 0.92142 1.04243 1.17552 0.99551 0.82820 0.92044 1.91397 1.95479 1.47962 1.78857 1.20696 1.02413 0.97899 0.99125 1.21296 0.95971 0.97491 0.96627 1.20269 0.95972 0.82204 0.92387 0.96276 1.23017 1.21393 0.97770 1.24234 0.89448 1.27046 0.99942 0.94127 1.01167 1.70856 1.20464 1.38477 1.27324 0.83040 0.73743 0.76059 0.74092 1.20833 1.18815 1.21122 0.89839 0.91720 0.93686 0.91448 0.93088 0.90248 0.91539 0.82956 0.80353 0.82316 0.93213 0.93254 0.92889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.85 6.80 71.98 0.49 -5.36 16 2 C 0.08 2.75 2.34 44.92 0.10 2.85 16 3 C -0.13 -3.60 9.33 71.98 0.67 -2.92 16 4 N -0.48 -20.25 4.92 -645.12 -3.17 -23.43 16 5 C 0.14 5.51 4.50 38.19 0.17 5.68 16 6 C -0.15 -4.53 7.45 22.48 0.17 -4.36 16 7 C -0.06 -1.50 10.02 22.20 0.22 -1.28 16 8 C -0.18 -5.39 10.04 22.35 0.22 -5.16 16 9 C 0.10 3.93 7.29 22.32 0.16 4.10 16 10 F -0.16 -6.57 17.26 44.97 0.78 -5.80 16 11 C -0.20 -8.77 6.20 -19.45 -0.12 -8.89 16 12 C -0.08 -3.83 5.55 30.67 0.17 -3.66 16 13 C 0.20 10.05 2.73 44.51 0.12 10.18 16 14 H 0.02 1.08 7.98 -2.39 -0.02 1.06 16 15 C -0.63 -33.27 6.74 25.60 0.17 -33.10 16 16 H 0.09 4.41 3.81 -2.91 -0.01 4.40 16 17 C -0.02 -1.28 5.13 84.66 0.43 -0.85 16 18 N -0.93 -56.27 13.02 21.45 0.28 -56.00 16 19 Si 1.11 49.60 29.90 68.60 2.05 51.65 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 21 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 22 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 23 H 0.08 2.29 5.02 -2.38 -0.01 2.28 16 24 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 25 H 0.04 1.86 5.41 -2.38 -0.01 1.85 16 26 H 0.07 2.81 6.73 -2.39 -0.02 2.80 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 1.59 6.08 -2.39 -0.01 1.57 16 30 H 0.15 3.58 5.00 -2.91 -0.01 3.57 16 31 H 0.18 2.58 8.06 -2.91 -0.02 2.56 16 32 H 0.16 3.57 8.06 -2.91 -0.02 3.55 16 33 H 0.05 2.83 6.61 -2.39 -0.02 2.81 16 34 H 0.05 2.44 8.14 -2.38 -0.02 2.42 16 35 H 0.26 15.89 6.13 -92.71 -0.57 15.32 16 Total: -1.00 -65.04 271.99 4.24 -60.80 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 1.31 Total: 15.55 kcal Atomic # 6 Polarization: -45.78 SS G_CDS: 2.99 Total: -42.79 kcal Atomic # 7 Polarization: -76.53 SS G_CDS: -2.89 Total: -79.42 kcal Atomic # 9 Polarization: -6.57 SS G_CDS: 0.78 Total: -5.80 kcal Atomic # 14 Polarization: 49.60 SS G_CDS: 2.05 Total: 51.65 kcal Total: -65.04 4.24 -60.80 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260122030.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.669 kcal (2) G-P(sol) polarization free energy of solvation -65.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds