Wall clock time and date at job start Mon Mar 30 2020 07:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99723 * 2 1 4 4 C 1.39844 * 111.00304 * 236.04384 * 2 1 3 5 5 C 1.38827 * 120.07710 * 59.72723 * 4 2 1 6 6 C 1.38153 * 119.94795 * 179.74253 * 5 4 2 7 7 C 1.38271 * 120.11145 * 0.53336 * 6 5 4 8 8 C 1.50700 * 119.91968 * 179.74672 * 7 6 5 9 9 C 1.50705 * 115.54606 * 234.28805 * 8 7 6 10 10 H 1.07995 * 119.99747 * 263.12304 * 9 8 7 11 11 C 1.37875 * 119.99517 * 83.13423 * 9 8 7 12 12 N 1.31511 * 120.00505 * 353.10787 * 11 9 8 13 13 Si 1.86805 * 119.99746 * 173.11167 * 11 9 8 14 14 H 1.48506 * 109.46997 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47449 * 119.99295 * 13 11 9 16 16 H 1.48500 * 109.47264 * 239.99854 * 13 11 9 17 17 C 1.52995 * 117.50193 * 88.62070 * 8 7 6 18 18 C 1.52999 * 117.50258 * 19.95942 * 8 7 6 19 19 C 1.38283 * 120.16192 * 359.71760 * 7 6 5 20 20 C 1.38281 * 120.04975 * 0.02682 * 19 7 6 21 21 F 1.35101 * 120.05875 * 180.02562 * 20 19 7 22 22 H 1.09009 * 109.46889 * 183.95224 * 1 2 3 23 23 H 1.08998 * 109.47138 * 63.95515 * 1 2 3 24 24 H 1.09002 * 109.47553 * 303.95602 * 1 2 3 25 25 H 1.09004 * 109.47270 * 56.04764 * 3 2 1 26 26 H 1.09000 * 109.47357 * 176.04386 * 3 2 1 27 27 H 1.09000 * 109.46944 * 296.04299 * 3 2 1 28 28 H 1.08002 * 120.02570 * 359.97324 * 5 4 2 29 29 H 1.08000 * 119.94678 * 180.23281 * 6 5 4 30 30 H 0.96996 * 119.99986 * 174.98482 * 12 11 9 31 31 H 1.09006 * 117.49832 * 359.97438 * 17 8 7 32 32 H 1.09001 * 117.50375 * 145.01834 * 17 8 7 33 33 H 1.08996 * 117.49931 * 214.98304 * 18 8 7 34 34 H 1.09005 * 117.49254 * 359.97438 * 18 8 7 35 35 H 1.08006 * 119.97970 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9702 -0.7292 -1.0829 5 6 1.6542 -0.3527 -2.3812 6 6 2.1551 -1.0718 -3.4492 7 6 2.9618 -2.1726 -3.2269 8 6 3.5012 -2.9573 -4.3949 9 6 3.2120 -4.4362 -4.3735 10 1 3.9535 -5.1260 -3.9984 11 6 2.0009 -4.9084 -4.8329 12 7 1.0480 -4.0640 -5.1625 13 14 1.7133 -6.7477 -4.9872 14 1 2.9331 -7.4772 -4.5567 15 1 0.5696 -7.1439 -4.1268 16 1 1.4090 -7.0843 -6.4012 17 6 4.8357 -2.5071 -4.9926 18 6 3.5329 -2.2633 -5.7581 19 6 3.2753 -2.5548 -1.9355 20 6 2.7818 -1.8367 -0.8617 21 9 3.0883 -2.2097 0.4001 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3634 0.5740 0.8524 25 1 1.5897 1.9164 0.8525 26 1 3.0827 1.3434 0.0709 27 1 1.7043 1.8723 -0.9233 28 1 1.0202 0.5040 -2.5563 29 1 1.9123 -0.7766 -4.4593 30 1 0.2233 -4.3920 -5.5538 31 1 5.3234 -1.6430 -4.5412 32 1 5.5044 -3.2805 -5.3707 33 1 3.3448 -2.8764 -6.6394 34 1 3.1630 -1.2393 -5.8101 35 1 3.9060 -3.4149 -1.7652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260139185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:58 Heat of formation + Delta-G solvation = 12.933165 kcal Electronic energy + Delta-G solvation = -18203.165707 eV Core-core repulsion = 15309.556217 eV Total energy + Delta-G solvation = -2893.609490 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -48.09641 -39.24798 -37.24267 -34.93051 -32.03394 -29.91546 -28.95618 -27.45646 -25.73643 -24.29771 -22.24933 -21.21082 -20.88363 -19.29378 -17.08505 -16.31004 -15.68227 -15.42738 -15.19666 -14.67102 -14.36311 -14.31551 -13.98025 -13.39422 -13.18974 -12.56411 -12.33346 -12.30234 -11.82392 -11.59905 -11.42910 -11.18503 -11.09147 -11.04046 -10.74118 -10.47346 -10.27003 -9.67009 -9.23205 -8.53633 -8.43679 -8.31482 -8.07587 -7.55474 -6.12494 -4.20375 1.89081 1.96732 3.24394 3.33677 3.36900 4.07523 4.29785 4.36029 4.94932 5.15089 5.22336 5.27713 5.42894 5.51510 5.56603 5.58178 5.77541 5.91006 5.96842 5.99811 6.17121 6.23765 6.30989 6.41748 6.55964 6.63930 6.74367 6.90699 7.00558 7.04842 7.29073 7.33197 7.39321 7.56086 7.77909 7.86758 8.28784 8.81157 9.46459 10.95444 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.007032 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.917767 B = 3980.620021 C = 4234.616136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.503 5.503 3 C 0.031 3.969 4 C 0.014 3.986 5 C -0.126 4.126 6 C -0.114 4.114 7 C 0.037 3.963 8 C 0.065 3.935 9 C -0.495 4.495 10 H 0.064 0.936 11 C 0.075 3.925 12 N -0.869 5.869 13 Si 0.889 3.111 14 H -0.271 1.271 15 H -0.283 1.283 16 H -0.283 1.283 17 C -0.198 4.198 18 C -0.158 4.158 19 C -0.140 4.140 20 C 0.113 3.887 21 F -0.141 7.141 22 H 0.069 0.931 23 H 0.030 0.970 24 H 0.067 0.933 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.028 0.972 28 H 0.114 0.886 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.068 0.932 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.542 8.383 5.275 9.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.223 5.223 3 C -0.116 4.116 4 C -0.081 4.081 5 C -0.146 4.146 6 C -0.132 4.132 7 C 0.036 3.964 8 C 0.065 3.935 9 C -0.532 4.532 10 H 0.082 0.918 11 C -0.130 4.130 12 N -0.504 5.504 13 Si 0.716 3.284 14 H -0.195 1.195 15 H -0.210 1.210 16 H -0.209 1.209 17 C -0.235 4.235 18 C -0.195 4.195 19 C -0.159 4.159 20 C 0.093 3.907 21 F -0.120 7.120 22 H 0.088 0.912 23 H 0.048 0.952 24 H 0.086 0.914 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.047 0.953 28 H 0.132 0.868 29 H 0.142 0.858 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.086 0.914 35 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 0.475 8.164 5.771 10.009 hybrid contribution -0.721 -0.643 -0.708 1.198 sum -0.246 7.520 5.062 9.069 Atomic orbital electron populations 1.22423 0.86392 1.02620 1.00262 1.59482 1.08139 1.13585 1.41142 1.22411 1.00920 0.88004 1.00269 1.18454 1.02882 0.97263 0.89489 1.21251 1.00691 1.00331 0.92290 1.20997 0.98131 0.95583 0.98540 1.19681 0.92121 0.90661 0.93953 1.17703 0.93863 0.93915 0.88020 1.20410 1.00439 0.88600 1.43794 0.91764 1.24975 0.95333 0.97706 0.94970 1.70029 1.05643 1.34116 1.40606 0.86582 0.78390 0.85608 0.77792 1.19542 1.20955 1.20851 1.23036 0.91690 1.01835 1.06921 1.22641 0.99588 0.99285 0.97974 1.20899 1.03064 1.00809 0.91173 1.17511 0.99049 0.95127 0.78988 1.91417 1.91564 1.90885 1.38098 0.91195 0.95178 0.91443 0.91436 0.91389 0.95298 0.86765 0.85840 0.92975 0.91377 0.89896 0.89786 0.91406 0.84889 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 9.34 60.06 0.56 0.98 16 2 N -0.50 -8.07 4.83 -186.77 -0.90 -8.97 16 3 C 0.03 0.40 9.39 60.07 0.56 0.97 16 4 C 0.01 0.25 4.74 -83.67 -0.40 -0.15 16 5 C -0.13 -2.29 8.58 -39.39 -0.34 -2.62 16 6 C -0.11 -2.33 9.29 -39.60 -0.37 -2.70 16 7 C 0.04 0.81 5.25 -104.59 -0.55 0.27 16 8 C 0.07 1.54 1.58 -156.81 -0.25 1.29 16 9 C -0.50 -12.95 8.54 -34.44 -0.29 -13.24 16 10 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 11 C 0.07 1.98 5.40 -17.82 -0.10 1.88 16 12 N -0.87 -23.68 13.03 55.43 0.72 -22.96 16 13 Si 0.89 20.61 29.55 -169.99 -5.02 15.59 16 14 H -0.27 -6.21 7.11 56.52 0.40 -5.80 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 17 C -0.20 -4.09 9.94 -26.70 -0.27 -4.35 16 18 C -0.16 -3.47 9.12 -26.70 -0.24 -3.71 16 19 C -0.14 -3.01 9.42 -39.55 -0.37 -3.38 16 20 C 0.11 2.30 7.31 -39.25 -0.29 2.01 16 21 F -0.14 -2.83 17.08 2.25 0.04 -2.80 16 22 H 0.07 1.03 8.14 -51.92 -0.42 0.61 16 23 H 0.03 0.40 7.11 -51.93 -0.37 0.03 16 24 H 0.07 0.76 8.12 -51.93 -0.42 0.34 16 25 H 0.07 0.72 8.12 -51.93 -0.42 0.30 16 26 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 27 H 0.03 0.35 7.36 -51.93 -0.38 -0.03 16 28 H 0.11 1.80 7.02 -52.49 -0.37 1.43 16 29 H 0.12 2.50 6.41 -52.49 -0.34 2.16 16 30 H 0.26 6.82 8.32 -40.82 -0.34 6.48 16 31 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 32 H 0.08 1.67 8.14 -51.93 -0.42 1.25 16 33 H 0.08 1.96 8.14 -51.93 -0.42 1.53 16 34 H 0.07 1.38 6.56 -51.93 -0.34 1.04 16 35 H 0.13 2.82 8.06 -52.48 -0.42 2.39 16 LS Contribution 299.30 15.07 4.51 4.51 Total: -1.00 -27.68 299.30 -7.71 -35.39 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -4.72 Total: 2.00 kcal Atomic # 6 Polarization: -20.43 SS G_CDS: -2.33 Total: -22.76 kcal Atomic # 7 Polarization: -31.75 SS G_CDS: -0.18 Total: -31.93 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -27.68 -7.71 -35.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.322 kcal (2) G-P(sol) polarization free energy of solvation -27.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds