Wall clock time and date at job start Mon Mar 30 2020 07:14:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46902 * 110.99723 * 2 1 4 4 C 1.39844 * 111.00304 * 236.04384 * 2 1 3 5 5 C 1.38827 * 120.07710 * 59.72723 * 4 2 1 6 6 C 1.38153 * 119.94795 * 179.74253 * 5 4 2 7 7 C 1.38271 * 120.11145 * 0.53336 * 6 5 4 8 8 C 1.50700 * 119.91968 * 179.74672 * 7 6 5 9 9 C 1.50705 * 115.54606 * 234.28805 * 8 7 6 10 10 H 1.07995 * 119.99747 * 263.12304 * 9 8 7 11 11 C 1.37875 * 119.99517 * 83.13423 * 9 8 7 12 12 N 1.31511 * 120.00505 * 353.10787 * 11 9 8 13 13 Si 1.86805 * 119.99746 * 173.11167 * 11 9 8 14 14 H 1.48506 * 109.46997 * 359.97438 * 13 11 9 15 15 H 1.48500 * 109.47449 * 119.99295 * 13 11 9 16 16 H 1.48500 * 109.47264 * 239.99854 * 13 11 9 17 17 C 1.52995 * 117.50193 * 88.62070 * 8 7 6 18 18 C 1.52999 * 117.50258 * 19.95942 * 8 7 6 19 19 C 1.38283 * 120.16192 * 359.71760 * 7 6 5 20 20 C 1.38281 * 120.04975 * 0.02682 * 19 7 6 21 21 F 1.35101 * 120.05875 * 180.02562 * 20 19 7 22 22 H 1.09009 * 109.46889 * 183.95224 * 1 2 3 23 23 H 1.08998 * 109.47138 * 63.95515 * 1 2 3 24 24 H 1.09002 * 109.47553 * 303.95602 * 1 2 3 25 25 H 1.09004 * 109.47270 * 56.04764 * 3 2 1 26 26 H 1.09000 * 109.47357 * 176.04386 * 3 2 1 27 27 H 1.09000 * 109.46944 * 296.04299 * 3 2 1 28 28 H 1.08002 * 120.02570 * 359.97324 * 5 4 2 29 29 H 1.08000 * 119.94678 * 180.23281 * 6 5 4 30 30 H 0.96996 * 119.99986 * 174.98482 * 12 11 9 31 31 H 1.09006 * 117.49832 * 359.97438 * 17 8 7 32 32 H 1.09001 * 117.50375 * 145.01834 * 17 8 7 33 33 H 1.08996 * 117.49931 * 214.98304 * 18 8 7 34 34 H 1.09005 * 117.49254 * 359.97438 * 18 8 7 35 35 H 1.08006 * 119.97970 * 180.02562 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9702 -0.7292 -1.0829 5 6 1.6542 -0.3527 -2.3812 6 6 2.1551 -1.0718 -3.4492 7 6 2.9618 -2.1726 -3.2269 8 6 3.5012 -2.9573 -4.3949 9 6 3.2120 -4.4362 -4.3735 10 1 3.9535 -5.1260 -3.9984 11 6 2.0009 -4.9084 -4.8329 12 7 1.0480 -4.0640 -5.1625 13 14 1.7133 -6.7477 -4.9872 14 1 2.9331 -7.4772 -4.5567 15 1 0.5696 -7.1439 -4.1268 16 1 1.4090 -7.0843 -6.4012 17 6 4.8357 -2.5071 -4.9926 18 6 3.5329 -2.2633 -5.7581 19 6 3.2753 -2.5548 -1.9355 20 6 2.7818 -1.8367 -0.8617 21 9 3.0883 -2.2097 0.4001 22 1 -0.3633 -1.0253 0.0708 23 1 -0.3633 0.4512 -0.9233 24 1 -0.3634 0.5740 0.8524 25 1 1.5897 1.9164 0.8525 26 1 3.0827 1.3434 0.0709 27 1 1.7043 1.8723 -0.9233 28 1 1.0202 0.5040 -2.5563 29 1 1.9123 -0.7766 -4.4593 30 1 0.2233 -4.3920 -5.5538 31 1 5.3234 -1.6430 -4.5412 32 1 5.5044 -3.2805 -5.3707 33 1 3.3448 -2.8764 -6.6394 34 1 3.1630 -1.2393 -5.8101 35 1 3.9060 -3.4149 -1.7652 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260139185.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:57 Heat of formation + Delta-G solvation = -0.973592 kcal Electronic energy + Delta-G solvation = -18203.768749 eV Core-core repulsion = 15309.556217 eV Total energy + Delta-G solvation = -2894.212532 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -49.67835 -40.73055 -38.75609 -36.46229 -34.00803 -31.47214 -30.43492 -28.48749 -27.67425 -25.66399 -23.85878 -22.69247 -22.53920 -20.99511 -18.78289 -17.83270 -17.20537 -17.06229 -16.66432 -16.54827 -16.00416 -15.59986 -15.23389 -14.99734 -14.83005 -14.06929 -13.87252 -13.38565 -13.30459 -13.13239 -12.92825 -12.77546 -12.68934 -12.62536 -12.45652 -12.19595 -11.96711 -11.42700 -11.00851 -10.48253 -10.19822 -9.66314 -9.50942 -9.14908 -8.11837 -6.24077 0.35415 0.39008 1.38972 1.43292 1.52315 2.41638 2.72688 2.86552 3.17177 3.40664 3.53969 3.94534 4.15649 4.22342 4.32688 4.41663 4.51334 4.56148 4.62814 4.66380 4.74024 4.83939 4.92259 4.95690 4.97159 4.98378 5.18113 5.26128 5.37819 5.60917 5.65858 5.74046 5.88420 5.92162 5.96173 6.37906 6.41178 6.80683 7.44373 8.95087 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.024996 B = 0.007032 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1119.917767 B = 3980.620021 C = 4234.616136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.520 5.520 3 C 0.030 3.970 4 C 0.027 3.973 5 C -0.115 4.115 6 C -0.120 4.120 7 C 0.016 3.984 8 C 0.038 3.962 9 C -0.509 4.509 10 H 0.053 0.947 11 C 0.033 3.967 12 N -0.893 5.893 13 Si 0.942 3.058 14 H -0.269 1.269 15 H -0.286 1.286 16 H -0.277 1.277 17 C -0.179 4.179 18 C -0.156 4.156 19 C -0.153 4.153 20 C 0.099 3.901 21 F -0.143 7.143 22 H 0.053 0.947 23 H 0.038 0.962 24 H 0.096 0.904 25 H 0.094 0.906 26 H 0.061 0.939 27 H 0.039 0.961 28 H 0.145 0.855 29 H 0.124 0.876 30 H 0.260 0.740 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.031 9.855 5.960 11.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.241 5.241 3 C -0.116 4.116 4 C -0.068 4.068 5 C -0.135 4.135 6 C -0.139 4.139 7 C 0.015 3.985 8 C 0.038 3.962 9 C -0.546 4.546 10 H 0.071 0.929 11 C -0.169 4.169 12 N -0.529 5.529 13 Si 0.768 3.232 14 H -0.193 1.193 15 H -0.213 1.213 16 H -0.203 1.203 17 C -0.216 4.216 18 C -0.193 4.193 19 C -0.173 4.173 20 C 0.079 3.921 21 F -0.122 7.122 22 H 0.072 0.928 23 H 0.057 0.943 24 H 0.115 0.885 25 H 0.112 0.888 26 H 0.080 0.920 27 H 0.057 0.943 28 H 0.163 0.837 29 H 0.141 0.859 30 H 0.069 0.931 31 H 0.107 0.893 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.101 0.899 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.024 9.640 6.459 11.604 hybrid contribution -0.551 -1.042 -0.842 1.448 sum -0.574 8.599 5.617 10.287 Atomic orbital electron populations 1.22494 0.84890 1.02320 1.02052 1.59539 1.09516 1.15224 1.39849 1.22506 1.00698 0.86401 1.02042 1.18608 1.01253 0.96392 0.90525 1.21483 1.00080 1.00541 0.91419 1.21067 0.98029 0.95535 0.99297 1.19598 0.93476 0.91833 0.93557 1.17768 0.96133 0.93073 0.89216 1.20657 1.00229 0.90313 1.43419 0.92863 1.25572 0.95279 1.00981 0.95035 1.70108 1.05860 1.35365 1.41582 0.85752 0.77970 0.81705 0.77740 1.19297 1.21268 1.20299 1.23053 0.90896 1.02274 1.05363 1.22558 1.00654 0.99526 0.96550 1.20866 1.03742 1.01048 0.91631 1.17652 0.99883 0.95942 0.78604 1.91402 1.91690 1.91033 1.38075 0.92805 0.94350 0.88495 0.88750 0.91982 0.94253 0.83748 0.85858 0.93124 0.89268 0.89726 0.91733 0.89895 0.85866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 9.34 127.69 1.19 1.90 16 2 N -0.52 -15.25 4.83 -744.82 -3.59 -18.84 16 3 C 0.03 0.67 9.39 127.69 1.20 1.86 16 4 C 0.03 0.95 4.74 38.21 0.18 1.13 16 5 C -0.12 -3.94 8.58 22.39 0.19 -3.75 16 6 C -0.12 -4.81 9.29 22.26 0.21 -4.61 16 7 C 0.02 0.71 5.25 -19.85 -0.10 0.61 16 8 C 0.04 1.82 1.58 -53.67 -0.08 1.74 16 9 C -0.51 -27.03 8.54 25.60 0.22 -26.81 16 10 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 11 C 0.03 1.77 5.40 84.65 0.46 2.23 16 12 N -0.89 -49.09 13.03 21.45 0.28 -48.81 16 13 Si 0.94 42.74 29.55 68.60 2.03 44.77 16 14 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 15 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 16 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 17 C -0.18 -7.29 9.94 30.62 0.30 -6.99 16 18 C -0.16 -6.82 9.12 30.62 0.28 -6.55 16 19 C -0.15 -6.66 9.42 22.29 0.21 -6.45 16 20 C 0.10 3.98 7.31 22.48 0.16 4.15 16 21 F -0.14 -5.71 17.08 44.97 0.77 -4.95 16 22 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 23 H 0.04 0.87 7.11 -2.39 -0.02 0.86 16 24 H 0.10 1.80 8.12 -2.39 -0.02 1.78 16 25 H 0.09 1.61 8.12 -2.38 -0.02 1.60 16 26 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.04 0.81 7.36 -2.39 -0.02 0.79 16 28 H 0.14 4.03 7.02 -2.91 -0.02 4.01 16 29 H 0.12 4.86 6.41 -2.91 -0.02 4.84 16 30 H 0.26 13.71 8.32 -92.71 -0.77 12.94 16 31 H 0.09 3.23 8.14 -2.38 -0.02 3.21 16 32 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 33 H 0.06 3.04 8.14 -2.39 -0.02 3.02 16 34 H 0.08 3.32 6.56 -2.38 -0.02 3.31 16 35 H 0.12 5.41 8.06 -2.91 -0.02 5.39 16 Total: -1.00 -58.63 299.30 4.97 -53.66 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: 1.08 Total: 15.71 kcal Atomic # 6 Polarization: -45.95 SS G_CDS: 4.42 Total: -41.54 kcal Atomic # 7 Polarization: -64.34 SS G_CDS: -3.31 Total: -67.65 kcal Atomic # 9 Polarization: -5.71 SS G_CDS: 0.77 Total: -4.95 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -58.63 4.97 -53.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260139185.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.684 kcal (2) G-P(sol) polarization free energy of solvation -58.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds