Wall clock time and date at job start Mon Mar 30 2020 07:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46266 * 299.97492 * 9 7 2 11 11 C 1.53035 * 109.46411 * 59.94843 * 9 7 2 12 12 C 1.53117 * 109.27918 * 179.19294 * 11 9 7 13 13 C 1.53121 * 109.16015 * 302.34595 * 12 11 9 14 14 C 1.53041 * 109.27986 * 57.65335 * 13 12 11 15 15 N 1.46850 * 109.45652 * 179.97438 * 9 7 2 16 16 C 1.46897 * 111.00305 * 54.14751 * 15 9 7 17 17 C 1.52999 * 109.47533 * 169.99580 * 16 15 9 18 18 C 1.50693 * 109.47115 * 179.97438 * 17 16 15 19 19 C 1.34518 * 125.78883 * 89.72028 * 18 17 16 20 20 C 1.41387 * 106.84011 * 179.88630 * 19 18 17 21 21 C 1.34518 * 106.84119 * 0.37116 * 20 19 18 22 22 O 1.34305 * 125.79116 * 270.01927 * 18 17 16 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.50462 * 299.13543 * 11 9 7 25 25 H 1.09002 * 109.50083 * 59.25245 * 11 9 7 26 26 H 1.09000 * 109.52484 * 182.44304 * 12 11 9 27 27 H 1.09001 * 109.57157 * 62.27865 * 12 11 9 28 28 H 1.09001 * 109.50547 * 297.70991 * 13 12 11 29 29 H 1.09002 * 109.50420 * 177.59370 * 13 12 11 30 30 H 1.08996 * 109.46140 * 180.80233 * 14 13 12 31 31 H 1.09002 * 109.45250 * 60.82834 * 14 13 12 32 32 H 1.09003 * 109.47009 * 289.99763 * 16 15 9 33 33 H 1.09001 * 109.47188 * 49.99543 * 16 15 9 34 34 H 1.09003 * 109.47123 * 300.00114 * 17 16 15 35 35 H 1.09001 * 109.46914 * 59.99795 * 17 16 15 36 36 H 1.07996 * 126.58180 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.58387 * 180.16159 * 20 19 18 38 38 H 1.07997 * 125.78996 * 179.74938 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6251 -2.5571 0.8899 11 6 0.3698 -2.5792 -1.2491 12 6 -0.3784 -3.9151 -1.2551 13 6 0.6371 -5.0600 -1.2065 14 6 1.5106 -4.9081 0.0409 15 7 2.2055 -3.6151 -0.0018 16 6 3.1590 -3.4937 1.1091 17 6 3.9709 -4.7850 1.2280 18 6 4.9494 -4.6600 2.3671 19 6 4.7126 -4.9958 3.6480 20 6 5.8964 -4.7187 4.3697 21 6 6.7831 -4.2225 3.4882 22 8 6.2040 -4.1893 2.2769 23 1 -0.4849 0.8400 0.0004 24 1 -0.3488 -1.7596 -1.2405 25 1 0.9937 -2.5075 -2.1401 26 1 -0.9741 -3.9949 -2.1644 27 1 -1.0325 -3.9711 -0.3850 28 1 1.2652 -5.0275 -2.0968 29 1 0.1095 -6.0130 -1.1674 30 1 2.2441 -5.7138 0.0709 31 1 0.8834 -4.9546 0.9311 32 1 3.8321 -2.6573 0.9203 33 1 2.6150 -3.3198 2.0375 34 1 3.2978 -5.6213 1.4167 35 1 4.5149 -4.9589 0.2995 36 1 3.7951 -5.4015 4.0480 37 1 6.0568 -4.8724 5.4266 38 1 7.7897 -3.9044 3.7161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260177366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:24 Heat of formation + Delta-G solvation = 9.936791 kcal Electronic energy + Delta-G solvation = -18494.673580 eV Core-core repulsion = 15724.394463 eV Total energy + Delta-G solvation = -2770.279118 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.35493 -38.26071 -34.18327 -32.89756 -32.72241 -30.94346 -29.46604 -27.19692 -25.17869 -23.86978 -21.62348 -21.44770 -20.85071 -19.83408 -18.63888 -17.15985 -16.45438 -15.78265 -15.21388 -14.56722 -14.41420 -13.99026 -13.44294 -13.30707 -12.79283 -12.66646 -12.58972 -12.57526 -12.24095 -11.95824 -11.32304 -11.07801 -10.91800 -10.76509 -10.58880 -10.40265 -10.16987 -9.99857 -9.75677 -9.56200 -9.26428 -8.74696 -8.37052 -8.21062 -7.15497 -6.00200 -4.04698 1.92720 2.78461 3.20228 3.31854 3.38130 3.42023 4.41869 4.76758 5.09831 5.18074 5.22278 5.31707 5.46672 5.60068 5.67323 5.73095 5.87884 5.94639 5.96254 6.06571 6.19149 6.29910 6.38428 6.40602 6.49160 6.60121 6.71248 6.74682 6.83423 6.89781 7.13270 7.28768 7.35193 7.58140 7.73878 7.85248 8.20187 8.34281 8.61574 9.01983 9.60417 11.06158 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.007350 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.200970 B = 3808.528654 C = 5163.145324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.506 4.506 8 H 0.063 0.937 9 C 0.220 3.780 10 H -0.001 1.001 11 C -0.105 4.105 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.049 3.951 15 N -0.533 5.533 16 C 0.076 3.924 17 C -0.050 4.050 18 C 0.011 3.989 19 C -0.222 4.222 20 C -0.213 4.213 21 C -0.054 4.054 22 O -0.174 6.174 23 H 0.260 0.740 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.019 0.981 32 H 0.082 0.918 33 H 0.029 0.971 34 H 0.091 0.909 35 H 0.086 0.914 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.798 -10.014 4.037 12.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.141 4.141 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.081 0.919 9 C 0.115 3.885 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.080 4.080 15 N -0.259 5.259 16 C -0.052 4.052 17 C -0.087 4.087 18 C -0.040 4.040 19 C -0.241 4.241 20 C -0.232 4.232 21 C -0.121 4.121 22 O -0.070 6.070 23 H 0.070 0.930 24 H 0.112 0.888 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.066 0.934 28 H 0.082 0.918 29 H 0.067 0.933 30 H 0.081 0.919 31 H 0.038 0.962 32 H 0.101 0.899 33 H 0.048 0.952 34 H 0.109 0.891 35 H 0.104 0.896 36 H 0.162 0.838 37 H 0.162 0.838 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 7.024 -9.749 3.333 12.469 hybrid contribution -0.072 0.859 1.137 1.427 sum 6.953 -8.890 4.471 12.139 Atomic orbital electron populations 1.69884 1.05861 1.26478 1.50961 1.24920 0.94866 0.99097 0.95209 0.86553 0.79797 0.83292 0.78127 1.20630 1.21346 1.19933 1.21198 0.93325 0.89818 1.50114 0.91904 1.19229 0.88774 0.87074 0.93470 0.98372 1.21640 0.99009 0.95013 0.98653 1.21690 0.97404 0.97180 0.99800 1.21544 0.97491 0.97490 0.98384 1.22129 0.95909 0.93291 0.96644 1.62151 1.19025 1.02286 1.42390 1.21886 0.95029 0.95220 0.93105 1.20514 0.93768 1.00440 0.93984 1.22643 0.83923 1.00204 0.97270 1.21556 1.00244 1.09281 0.93021 1.21777 0.94335 1.06468 1.00652 1.23937 0.99747 1.06182 0.82256 1.84045 1.24992 1.65211 1.32772 0.92991 0.88828 0.93809 0.93752 0.93442 0.91842 0.93321 0.91948 0.96241 0.89925 0.95249 0.89108 0.89592 0.83788 0.83847 0.78503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 2 C 0.06 1.66 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 4 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.51 -13.85 8.00 -34.44 -0.28 -14.12 16 8 H 0.06 1.73 6.33 -52.49 -0.33 1.40 16 9 C 0.22 5.53 1.79 -68.87 -0.12 5.40 16 10 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 11 C -0.10 -2.50 5.14 -26.65 -0.14 -2.64 16 12 C -0.12 -2.41 6.00 -26.61 -0.16 -2.57 16 13 C -0.11 -1.92 6.09 -26.65 -0.16 -2.08 16 14 C 0.05 0.87 4.85 -3.83 -0.02 0.85 16 15 N -0.53 -11.34 4.63 -228.07 -1.06 -12.39 16 16 C 0.08 1.49 4.63 -3.83 -0.02 1.48 16 17 C -0.05 -0.78 5.00 -27.89 -0.14 -0.92 16 18 C 0.01 0.17 6.57 -35.63 -0.23 -0.07 16 19 C -0.22 -3.22 10.81 -39.70 -0.43 -3.65 16 20 C -0.21 -2.75 10.91 -39.70 -0.43 -3.18 16 21 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 22 O -0.17 -2.75 10.65 5.69 0.06 -2.69 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.09 2.48 6.09 -51.93 -0.32 2.16 16 25 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.96 5.81 -51.93 -0.30 0.65 16 31 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.08 1.80 6.55 -51.93 -0.34 1.46 16 33 H 0.03 0.61 8.08 -51.93 -0.42 0.19 16 34 H 0.09 1.27 6.21 -51.93 -0.32 0.95 16 35 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 36 H 0.14 1.88 8.06 -52.49 -0.42 1.45 16 37 H 0.14 1.47 8.06 -52.49 -0.42 1.04 16 38 H 0.20 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 301.34 15.07 4.54 4.54 Total: -1.00 -29.27 301.34 -8.54 -37.80 By element: Atomic # 1 Polarization: 7.07 SS G_CDS: -5.82 Total: 1.26 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -1.87 Total: -20.25 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: -0.43 Total: -37.12 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: 0.06 Total: -2.69 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.27 -8.54 -37.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.740 kcal (2) G-P(sol) polarization free energy of solvation -29.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.803 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds