Wall clock time and date at job start Mon Mar 30 2020 07:40:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00235 * 2 1 4 4 H 1.48495 * 109.47555 * 270.00498 * 3 2 1 5 5 H 1.48503 * 109.46814 * 30.00387 * 3 2 1 6 6 H 1.48496 * 109.47318 * 149.99879 * 3 2 1 7 7 C 1.37879 * 120.00338 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00409 * 179.97438 * 7 2 1 9 9 C 1.50706 * 119.99394 * 359.97438 * 7 2 1 10 10 H 1.08995 * 109.46266 * 299.97492 * 9 7 2 11 11 C 1.53035 * 109.46411 * 59.94843 * 9 7 2 12 12 C 1.53117 * 109.27918 * 179.19294 * 11 9 7 13 13 C 1.53121 * 109.16015 * 302.34595 * 12 11 9 14 14 C 1.53041 * 109.27986 * 57.65335 * 13 12 11 15 15 N 1.46850 * 109.45652 * 179.97438 * 9 7 2 16 16 C 1.46897 * 111.00305 * 54.14751 * 15 9 7 17 17 C 1.52999 * 109.47533 * 169.99580 * 16 15 9 18 18 C 1.50693 * 109.47115 * 179.97438 * 17 16 15 19 19 C 1.34518 * 125.78883 * 89.72028 * 18 17 16 20 20 C 1.41387 * 106.84011 * 179.88630 * 19 18 17 21 21 C 1.34518 * 106.84119 * 0.37116 * 20 19 18 22 22 O 1.34305 * 125.79116 * 270.01927 * 18 17 16 23 23 H 0.96996 * 119.99730 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.50462 * 299.13543 * 11 9 7 25 25 H 1.09002 * 109.50083 * 59.25245 * 11 9 7 26 26 H 1.09000 * 109.52484 * 182.44304 * 12 11 9 27 27 H 1.09001 * 109.57157 * 62.27865 * 12 11 9 28 28 H 1.09001 * 109.50547 * 297.70991 * 13 12 11 29 29 H 1.09002 * 109.50420 * 177.59370 * 13 12 11 30 30 H 1.08996 * 109.46140 * 180.80233 * 14 13 12 31 31 H 1.09002 * 109.45250 * 60.82834 * 14 13 12 32 32 H 1.09003 * 109.47009 * 289.99763 * 16 15 9 33 33 H 1.09001 * 109.47188 * 49.99543 * 16 15 9 34 34 H 1.09003 * 109.47123 * 300.00114 * 17 16 15 35 35 H 1.09001 * 109.46914 * 59.99795 * 17 16 15 36 36 H 1.07996 * 126.58180 * 0.02562 * 19 18 17 37 37 H 1.08001 * 126.58387 * 180.16159 * 20 19 18 38 38 H 1.07997 * 125.78996 * 179.74938 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4991 -0.0005 10 1 0.6251 -2.5571 0.8899 11 6 0.3698 -2.5792 -1.2491 12 6 -0.3784 -3.9151 -1.2551 13 6 0.6371 -5.0600 -1.2065 14 6 1.5106 -4.9081 0.0409 15 7 2.2055 -3.6151 -0.0018 16 6 3.1590 -3.4937 1.1091 17 6 3.9709 -4.7850 1.2280 18 6 4.9494 -4.6600 2.3671 19 6 4.7126 -4.9958 3.6480 20 6 5.8964 -4.7187 4.3697 21 6 6.7831 -4.2225 3.4882 22 8 6.2040 -4.1893 2.2769 23 1 -0.4849 0.8400 0.0004 24 1 -0.3488 -1.7596 -1.2405 25 1 0.9937 -2.5075 -2.1401 26 1 -0.9741 -3.9949 -2.1644 27 1 -1.0325 -3.9711 -0.3850 28 1 1.2652 -5.0275 -2.0968 29 1 0.1095 -6.0130 -1.1674 30 1 2.2441 -5.7138 0.0709 31 1 0.8834 -4.9546 0.9311 32 1 3.8321 -2.6573 0.9203 33 1 2.6150 -3.3198 2.0375 34 1 3.2978 -5.6213 1.4167 35 1 4.5149 -4.9589 0.2995 36 1 3.7951 -5.4015 4.0480 37 1 6.0568 -4.8724 5.4266 38 1 7.7897 -3.9044 3.7161 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260177366.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:24 Heat of formation + Delta-G solvation = -7.538742 kcal Electronic energy + Delta-G solvation = -18495.431376 eV Core-core repulsion = 15724.394463 eV Total energy + Delta-G solvation = -2771.036914 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.44065 -39.93319 -35.71129 -34.85778 -33.84493 -32.35956 -31.25130 -28.50287 -27.14179 -25.39328 -23.18028 -22.63717 -22.39967 -21.07440 -20.33448 -18.56390 -18.16981 -17.09375 -16.86507 -16.14114 -15.90053 -15.56341 -15.02292 -14.89756 -14.40077 -14.25228 -13.85368 -13.73633 -13.70584 -13.41143 -12.87803 -12.76446 -12.59468 -12.57487 -12.35330 -11.97757 -11.96019 -11.78388 -11.36968 -10.95088 -10.79577 -10.71272 -10.41540 -9.32207 -8.91887 -8.12204 -6.24077 0.83492 1.38599 1.39268 1.49396 1.73484 2.16427 2.40087 3.13967 3.33320 3.91060 4.03606 4.15299 4.18872 4.21106 4.24087 4.38098 4.41391 4.59832 4.67030 4.80250 4.86324 4.89328 4.98056 5.05542 5.09089 5.14919 5.16548 5.25973 5.31158 5.36517 5.47908 5.64593 5.66378 5.76856 5.81925 6.26501 6.29376 6.39979 6.77855 6.91011 7.44886 8.92828 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016923 B = 0.007350 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.200970 B = 3808.528654 C = 5163.145324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.954 3.046 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.226 3.774 10 H -0.042 1.042 11 C -0.099 4.099 12 C -0.119 4.119 13 C -0.106 4.106 14 C 0.044 3.956 15 N -0.539 5.539 16 C 0.083 3.917 17 C -0.033 4.033 18 C -0.022 4.022 19 C -0.224 4.224 20 C -0.224 4.224 21 C -0.050 4.050 22 O -0.196 6.196 23 H 0.261 0.739 24 H 0.061 0.939 25 H 0.032 0.968 26 H 0.064 0.936 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.014 0.986 32 H 0.053 0.947 33 H 0.008 0.992 34 H 0.112 0.888 35 H 0.090 0.910 36 H 0.155 0.845 37 H 0.171 0.829 38 H 0.237 0.763 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.971 -11.478 4.321 14.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.197 1.197 7 C -0.562 4.562 8 H 0.072 0.928 9 C 0.119 3.881 10 H -0.025 1.025 11 C -0.138 4.138 12 C -0.156 4.156 13 C -0.143 4.143 14 C -0.084 4.084 15 N -0.264 5.264 16 C -0.045 4.045 17 C -0.070 4.070 18 C -0.072 4.072 19 C -0.244 4.244 20 C -0.243 4.243 21 C -0.117 4.117 22 O -0.093 6.093 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.051 0.949 26 H 0.083 0.917 27 H 0.059 0.941 28 H 0.085 0.915 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.033 0.967 32 H 0.071 0.929 33 H 0.027 0.973 34 H 0.130 0.870 35 H 0.109 0.891 36 H 0.173 0.827 37 H 0.188 0.812 38 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 8.202 -11.231 3.616 14.370 hybrid contribution -0.400 1.312 1.121 1.771 sum 7.801 -9.919 4.737 13.479 Atomic orbital electron populations 1.70015 1.07035 1.27188 1.51487 1.25670 0.95690 1.02242 0.94934 0.85610 0.78572 0.79463 0.78341 1.19909 1.20750 1.19725 1.21487 0.93128 0.91444 1.50158 0.92792 1.18997 0.88917 0.87957 0.92227 1.02461 1.21450 0.98257 0.96740 0.97367 1.21622 0.97795 0.95685 1.00523 1.21549 0.96857 0.98015 0.97922 1.22327 0.96802 0.92231 0.97012 1.62078 1.18557 1.02772 1.43004 1.21741 0.94400 0.96843 0.91520 1.20299 0.93653 0.98382 0.94682 1.22638 0.84435 1.02434 0.97742 1.21896 1.01264 1.08324 0.92879 1.22162 0.93632 1.06440 1.02075 1.24814 1.01122 1.04625 0.81100 1.84026 1.25196 1.65643 1.34449 0.92944 0.92059 0.94899 0.91701 0.94121 0.91523 0.89440 0.88430 0.96735 0.92898 0.97344 0.87031 0.89104 0.82750 0.81164 0.74671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.83 11.32 21.45 0.24 -53.59 16 2 C 0.01 0.76 5.30 84.66 0.45 1.21 16 3 Si 0.95 44.95 29.54 68.60 2.03 46.98 16 4 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.27 -12.63 7.11 99.48 0.71 -11.93 16 7 C -0.52 -29.78 8.00 25.60 0.20 -29.57 16 8 H 0.05 3.09 6.33 -2.91 -0.02 3.07 16 9 C 0.23 11.76 1.79 44.19 0.08 11.84 16 10 H -0.04 -2.47 8.14 -2.39 -0.02 -2.49 16 11 C -0.10 -4.88 5.14 30.64 0.16 -4.72 16 12 C -0.12 -4.55 6.00 30.67 0.18 -4.37 16 13 C -0.11 -3.37 6.09 30.65 0.19 -3.18 16 14 C 0.04 1.50 4.85 86.33 0.42 1.92 16 15 N -0.54 -23.15 4.63 -875.48 -4.06 -27.21 16 16 C 0.08 3.36 4.63 86.30 0.40 3.76 16 17 C -0.03 -1.01 5.00 29.85 0.15 -0.86 16 18 C -0.02 -0.68 6.57 24.83 0.16 -0.52 16 19 C -0.22 -6.21 10.81 22.19 0.24 -5.97 16 20 C -0.22 -5.27 10.91 22.19 0.24 -5.03 16 21 C -0.05 -1.16 12.09 66.97 0.81 -0.35 16 22 O -0.20 -6.01 10.65 -2.54 -0.03 -6.04 16 23 H 0.26 14.56 8.31 -92.71 -0.77 13.79 16 24 H 0.06 3.38 6.09 -2.39 -0.01 3.36 16 25 H 0.03 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 27 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 28 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 29 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 30 H 0.10 2.67 5.81 -2.39 -0.01 2.65 16 31 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.05 2.41 6.55 -2.39 -0.02 2.39 16 33 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 34 H 0.11 2.88 6.21 -2.39 -0.01 2.86 16 35 H 0.09 2.66 8.14 -2.39 -0.02 2.65 16 36 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 37 H 0.17 2.95 8.06 -2.91 -0.02 2.92 16 38 H 0.24 3.21 8.06 -2.91 -0.02 3.19 16 Total: -1.00 -65.92 301.34 2.90 -63.03 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: 1.03 Total: 12.65 kcal Atomic # 6 Polarization: -39.51 SS G_CDS: 3.68 Total: -35.82 kcal Atomic # 7 Polarization: -76.98 SS G_CDS: -3.81 Total: -80.80 kcal Atomic # 8 Polarization: -6.01 SS G_CDS: -0.03 Total: -6.04 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -65.92 2.90 -63.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177366.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.489 kcal (2) G-P(sol) polarization free energy of solvation -65.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds