Wall clock time and date at job start Mon Mar 30 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46486 * 59.97587 * 9 7 2 11 11 C 1.53038 * 109.46483 * 299.99792 * 9 7 2 12 12 C 1.53118 * 109.28092 * 180.80491 * 11 9 7 13 13 C 1.53124 * 109.15885 * 57.65600 * 12 11 9 14 14 C 1.53038 * 109.27468 * 302.34382 * 13 12 11 15 15 N 1.46845 * 109.46232 * 179.97438 * 9 7 2 16 16 C 1.46901 * 111.00202 * 305.85759 * 15 9 7 17 17 C 1.52995 * 109.47236 * 170.00072 * 16 15 9 18 18 C 1.50705 * 109.47027 * 179.97438 * 17 16 15 19 19 C 1.34517 * 125.78887 * 89.71413 * 18 17 16 20 20 C 1.41384 * 106.83580 * 179.89193 * 19 18 17 21 21 C 1.34506 * 106.84713 * 0.37212 * 20 19 18 22 22 O 1.34301 * 125.78817 * 270.02540 * 18 17 16 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09001 * 109.50227 * 300.75248 * 11 9 7 25 25 H 1.09000 * 109.49894 * 60.82574 * 11 9 7 26 26 H 1.08997 * 109.52158 * 177.55932 * 12 11 9 27 27 H 1.08999 * 109.52337 * 297.75053 * 12 11 9 28 28 H 1.08996 * 109.50177 * 62.28378 * 13 12 11 29 29 H 1.08997 * 109.50327 * 182.36684 * 13 12 11 30 30 H 1.09000 * 109.45802 * 179.19594 * 14 13 12 31 31 H 1.08999 * 109.46438 * 299.17108 * 14 13 12 32 32 H 1.09007 * 109.47019 * 289.99922 * 16 15 9 33 33 H 1.08998 * 109.47165 * 49.99789 * 16 15 9 34 34 H 1.08998 * 109.47090 * 299.99600 * 17 16 15 35 35 H 1.08998 * 109.47275 * 59.99784 * 17 16 15 36 36 H 1.08001 * 126.58105 * 0.02562 * 19 18 17 37 37 H 1.08009 * 126.57646 * 180.12335 * 20 19 18 38 38 H 1.08003 * 125.79397 * 179.75882 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6245 -2.5607 -0.8783 11 6 0.3708 -2.5743 1.2611 12 6 -0.3774 -3.9101 1.2730 13 6 0.6381 -5.0553 1.2281 14 6 1.5105 -4.9082 -0.0207 15 7 2.2054 -3.6151 0.0164 16 6 3.1582 -3.4980 -1.0956 17 6 4.2784 -4.5247 -0.9177 18 6 5.2555 -4.4050 -2.0588 19 6 6.3399 -3.6094 -2.0858 20 6 6.9664 -3.8136 -3.3367 21 6 6.2230 -4.7153 -4.0026 22 8 5.1879 -5.0700 -3.2237 23 1 -0.4850 0.8401 -0.0041 24 1 0.9954 -2.4990 2.1513 25 1 -0.3473 -1.7544 1.2502 26 1 -0.9724 -3.9863 2.1830 27 1 -1.0315 -3.9690 0.4030 28 1 1.2669 -5.0192 2.1176 29 1 0.1104 -6.0085 1.1938 30 1 2.2440 -5.7141 -0.0481 31 1 0.8827 -4.9582 -0.9103 32 1 2.6417 -3.6834 -2.0375 33 1 3.5833 -2.4944 -1.1057 34 1 4.7949 -4.3394 0.0242 35 1 3.8533 -5.5283 -0.9076 36 1 6.6698 -2.9443 -1.3015 37 1 7.8669 -3.3340 -3.6914 38 1 6.4241 -5.0904 -4.9952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260177370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:28 Heat of formation + Delta-G solvation = 7.618739 kcal Electronic energy + Delta-G solvation = -18490.947562 eV Core-core repulsion = 15720.567927 eV Total energy + Delta-G solvation = -2770.379636 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.33181 -38.18306 -34.10784 -32.91221 -32.70296 -30.95758 -29.45991 -27.22053 -25.19116 -23.69852 -21.55752 -21.48072 -20.83068 -19.89403 -18.64147 -17.11818 -16.45063 -15.77781 -15.25951 -14.43773 -14.35204 -13.93066 -13.54588 -13.28686 -12.81093 -12.64122 -12.55475 -12.53626 -12.05458 -12.01730 -11.53319 -11.04834 -10.90515 -10.74996 -10.54530 -10.37741 -10.14099 -9.96399 -9.73091 -9.57378 -9.24959 -8.74150 -8.38057 -8.19185 -7.18176 -6.00975 -4.05712 1.94578 2.82654 3.21855 3.32434 3.36715 3.39633 4.40683 4.78286 5.11674 5.21574 5.27041 5.31452 5.52757 5.66499 5.69255 5.76503 5.92883 6.00391 6.02982 6.12270 6.21831 6.31414 6.39261 6.41867 6.53339 6.60802 6.71190 6.78736 6.83859 6.90207 7.14633 7.29147 7.37413 7.59115 7.73534 7.83433 8.20104 8.34080 8.61065 9.00416 9.59054 11.05326 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.007506 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.453924 B = 3729.430213 C = 5145.995058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.061 3.939 3 Si 0.894 3.106 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.220 3.780 10 H -0.002 1.002 11 C -0.104 4.104 12 C -0.123 4.123 13 C -0.111 4.111 14 C 0.053 3.947 15 N -0.533 5.533 16 C 0.067 3.933 17 C -0.041 4.041 18 C 0.008 3.992 19 C -0.217 4.217 20 C -0.212 4.212 21 C -0.057 4.057 22 O -0.179 6.179 23 H 0.261 0.739 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.044 0.956 27 H 0.047 0.953 28 H 0.063 0.937 29 H 0.048 0.952 30 H 0.058 0.942 31 H 0.019 0.981 32 H 0.021 0.979 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.148 0.852 37 H 0.144 0.856 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.631 -9.060 -3.113 12.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.140 4.140 3 Si 0.722 3.278 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.202 1.202 7 C -0.546 4.546 8 H 0.082 0.918 9 C 0.115 3.885 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.161 4.161 13 C -0.149 4.149 14 C -0.076 4.076 15 N -0.258 5.258 16 C -0.061 4.061 17 C -0.078 4.078 18 C -0.043 4.043 19 C -0.236 4.236 20 C -0.231 4.231 21 C -0.125 4.125 22 O -0.075 6.075 23 H 0.071 0.929 24 H 0.062 0.938 25 H 0.111 0.889 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.081 0.919 29 H 0.067 0.933 30 H 0.077 0.923 31 H 0.037 0.963 32 H 0.039 0.961 33 H 0.113 0.887 34 H 0.117 0.883 35 H 0.092 0.908 36 H 0.165 0.835 37 H 0.162 0.838 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 7.488 -9.098 -2.740 12.098 hybrid contribution 0.206 1.033 -0.904 1.388 sum 7.694 -8.065 -3.645 11.727 Atomic orbital electron populations 1.69878 1.05879 1.26616 1.50711 1.24924 0.94865 0.99083 0.95178 0.86619 0.79541 0.82975 0.78649 1.20330 1.21352 1.20172 1.21154 0.93228 0.89837 1.50408 0.91821 1.19186 0.88858 0.87049 0.93451 0.98427 1.21636 0.99006 0.95002 0.98626 1.21690 0.97418 0.97179 0.99793 1.21535 0.97491 0.97502 0.98332 1.22059 0.95857 0.93064 0.96585 1.62002 1.19013 1.02281 1.42501 1.21974 0.92465 0.99523 0.92179 1.20325 0.94234 1.01214 0.92070 1.22684 0.98715 0.95802 0.87074 1.21613 0.97893 1.04411 0.99731 1.21799 1.02875 1.02492 0.95911 1.23905 0.89072 1.01906 0.97579 1.84017 1.43237 1.55853 1.24400 0.92910 0.93807 0.88855 0.93743 0.93444 0.91851 0.93337 0.92314 0.96259 0.96079 0.88703 0.88287 0.90808 0.83462 0.83840 0.78584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.20 11.33 55.43 0.63 -24.58 16 2 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 3 Si 0.89 21.21 29.54 -169.99 -5.02 16.19 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.51 -13.70 7.80 -34.44 -0.27 -13.97 16 8 H 0.06 1.70 6.31 -52.49 -0.33 1.37 16 9 C 0.22 5.51 1.83 -68.88 -0.13 5.38 16 10 H 0.00 -0.05 8.14 -51.93 -0.42 -0.48 16 11 C -0.10 -2.48 5.14 -26.65 -0.14 -2.62 16 12 C -0.12 -2.42 6.00 -26.61 -0.16 -2.58 16 13 C -0.11 -1.93 6.09 -26.65 -0.16 -2.09 16 14 C 0.05 0.97 5.29 -3.83 -0.02 0.95 16 15 N -0.53 -11.32 4.49 -228.08 -1.02 -12.34 16 16 C 0.07 1.32 4.71 -3.83 -0.02 1.30 16 17 C -0.04 -0.65 5.68 -27.88 -0.16 -0.81 16 18 C 0.01 0.13 6.58 -35.62 -0.23 -0.11 16 19 C -0.22 -3.26 10.81 -39.70 -0.43 -3.69 16 20 C -0.21 -2.78 10.91 -39.70 -0.43 -3.22 16 21 C -0.06 -0.73 12.09 29.41 0.36 -0.37 16 22 O -0.18 -2.79 10.65 5.69 0.06 -2.73 16 23 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 24 H 0.04 1.06 8.14 -51.93 -0.42 0.63 16 25 H 0.09 2.46 6.09 -51.93 -0.32 2.15 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.06 0.94 6.21 -51.93 -0.32 0.62 16 31 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.02 0.44 8.12 -51.93 -0.42 0.01 16 33 H 0.09 2.06 5.81 -51.93 -0.30 1.76 16 34 H 0.10 1.51 8.14 -51.93 -0.42 1.09 16 35 H 0.07 1.10 6.43 -51.93 -0.33 0.77 16 36 H 0.15 2.05 8.06 -52.49 -0.42 1.62 16 37 H 0.14 1.51 8.06 -52.48 -0.42 1.09 16 38 H 0.20 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 302.14 15.07 4.55 4.55 Total: -1.00 -28.86 302.14 -8.50 -37.36 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -5.81 Total: 1.80 kcal Atomic # 6 Polarization: -18.37 SS G_CDS: -1.89 Total: -20.25 kcal Atomic # 7 Polarization: -36.52 SS G_CDS: -0.40 Total: -36.91 kcal Atomic # 8 Polarization: -2.79 SS G_CDS: 0.06 Total: -2.73 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -28.86 -8.50 -37.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.977 kcal (2) G-P(sol) polarization free energy of solvation -28.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.358 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds