Wall clock time and date at job start Mon Mar 30 2020 07:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 120.00175 * 2 1 4 4 H 1.48498 * 109.47200 * 239.72287 * 3 2 1 5 5 H 1.48498 * 109.46671 * 359.72211 * 3 2 1 6 6 H 1.48499 * 109.47156 * 119.72301 * 3 2 1 7 7 C 1.37885 * 119.99913 * 179.72292 * 2 1 3 8 8 H 1.08000 * 119.99535 * 180.02562 * 7 2 1 9 9 C 1.50694 * 119.99902 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46486 * 59.97587 * 9 7 2 11 11 C 1.53038 * 109.46483 * 299.99792 * 9 7 2 12 12 C 1.53118 * 109.28092 * 180.80491 * 11 9 7 13 13 C 1.53124 * 109.15885 * 57.65600 * 12 11 9 14 14 C 1.53038 * 109.27468 * 302.34382 * 13 12 11 15 15 N 1.46845 * 109.46232 * 179.97438 * 9 7 2 16 16 C 1.46901 * 111.00202 * 305.85759 * 15 9 7 17 17 C 1.52995 * 109.47236 * 170.00072 * 16 15 9 18 18 C 1.50705 * 109.47027 * 179.97438 * 17 16 15 19 19 C 1.34517 * 125.78887 * 89.71413 * 18 17 16 20 20 C 1.41384 * 106.83580 * 179.89193 * 19 18 17 21 21 C 1.34506 * 106.84713 * 0.37212 * 20 19 18 22 22 O 1.34301 * 125.78817 * 270.02540 * 18 17 16 23 23 H 0.97001 * 119.99646 * 0.28069 * 1 2 3 24 24 H 1.09001 * 109.50227 * 300.75248 * 11 9 7 25 25 H 1.09000 * 109.49894 * 60.82574 * 11 9 7 26 26 H 1.08997 * 109.52158 * 177.55932 * 12 11 9 27 27 H 1.08999 * 109.52337 * 297.75053 * 12 11 9 28 28 H 1.08996 * 109.50177 * 62.28378 * 13 12 11 29 29 H 1.08997 * 109.50327 * 182.36684 * 13 12 11 30 30 H 1.09000 * 109.45802 * 179.19594 * 14 13 12 31 31 H 1.08999 * 109.46438 * 299.17108 * 14 13 12 32 32 H 1.09007 * 109.47019 * 289.99922 * 16 15 9 33 33 H 1.08998 * 109.47165 * 49.99789 * 16 15 9 34 34 H 1.08998 * 109.47090 * 299.99600 * 17 16 15 35 35 H 1.08998 * 109.47275 * 59.99784 * 17 16 15 36 36 H 1.08001 * 126.58105 * 0.02562 * 19 18 17 37 37 H 1.08009 * 126.57646 * 180.12335 * 20 19 18 38 38 H 1.08003 * 125.79397 * 179.75882 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1081 1.6935 -1.2091 5 1 1.2842 2.7464 -0.0068 6 1 3.0979 1.6993 1.2159 7 6 2.0046 -1.1941 0.0058 8 1 3.0846 -1.1940 0.0062 9 6 1.2511 -2.4991 0.0115 10 1 0.6245 -2.5607 -0.8783 11 6 0.3708 -2.5743 1.2611 12 6 -0.3774 -3.9101 1.2730 13 6 0.6381 -5.0553 1.2281 14 6 1.5105 -4.9082 -0.0207 15 7 2.2054 -3.6151 0.0164 16 6 3.1582 -3.4980 -1.0956 17 6 4.2784 -4.5247 -0.9177 18 6 5.2555 -4.4050 -2.0588 19 6 6.3399 -3.6094 -2.0858 20 6 6.9664 -3.8136 -3.3367 21 6 6.2230 -4.7153 -4.0026 22 8 5.1879 -5.0700 -3.2237 23 1 -0.4850 0.8401 -0.0041 24 1 0.9954 -2.4990 2.1513 25 1 -0.3473 -1.7544 1.2502 26 1 -0.9724 -3.9863 2.1830 27 1 -1.0315 -3.9690 0.4030 28 1 1.2669 -5.0192 2.1176 29 1 0.1104 -6.0085 1.1938 30 1 2.2440 -5.7141 -0.0481 31 1 0.8827 -4.9582 -0.9103 32 1 2.6417 -3.6834 -2.0375 33 1 3.5833 -2.4944 -1.1057 34 1 4.7949 -4.3394 0.0242 35 1 3.8533 -5.5283 -0.9076 36 1 6.6698 -2.9443 -1.3015 37 1 7.8669 -3.3340 -3.6914 38 1 6.4241 -5.0904 -4.9952 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260177370.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:28 Heat of formation + Delta-G solvation = -9.202897 kcal Electronic energy + Delta-G solvation = -18491.677003 eV Core-core repulsion = 15720.567927 eV Total energy + Delta-G solvation = -2771.109077 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.43160 -39.87547 -35.62497 -34.87674 -33.84406 -32.36915 -31.27438 -28.53218 -27.14366 -25.22449 -23.19498 -22.62438 -22.41899 -21.11228 -20.36075 -18.51796 -18.17542 -17.09925 -16.86816 -16.10898 -15.88861 -15.32578 -15.15289 -14.93378 -14.46255 -14.21446 -13.80965 -13.71112 -13.67333 -13.35380 -13.02044 -12.80247 -12.64524 -12.50160 -12.33896 -12.01769 -11.83609 -11.76268 -11.37191 -10.93559 -10.79847 -10.70053 -10.40398 -9.32408 -8.95460 -8.10652 -6.22565 0.84212 1.41032 1.42500 1.49910 1.74679 2.15728 2.41516 3.15427 3.33261 3.93213 4.05539 4.17090 4.19207 4.22191 4.26928 4.37677 4.43479 4.59996 4.68241 4.83820 4.86297 4.91901 4.98111 5.05363 5.08705 5.14771 5.20063 5.26359 5.33072 5.36305 5.47796 5.65698 5.66292 5.76669 5.82324 6.26845 6.29623 6.39898 6.76561 6.92219 7.46011 8.94465 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.016708 B = 0.007506 C = 0.005440 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1675.453924 B = 3729.430213 C = 5145.995058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.523 4.523 8 H 0.061 0.939 9 C 0.225 3.775 10 H -0.046 1.046 11 C -0.099 4.099 12 C -0.119 4.119 13 C -0.104 4.104 14 C 0.048 3.952 15 N -0.535 5.535 16 C 0.073 3.927 17 C -0.025 4.025 18 C -0.022 4.022 19 C -0.225 4.225 20 C -0.225 4.225 21 C -0.049 4.049 22 O -0.196 6.196 23 H 0.261 0.739 24 H 0.035 0.965 25 H 0.061 0.939 26 H 0.066 0.934 27 H 0.037 0.963 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.008 0.992 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.152 0.848 37 H 0.170 0.830 38 H 0.239 0.761 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.127 -10.326 -3.200 14.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.559 5.559 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.562 4.562 8 H 0.079 0.921 9 C 0.118 3.882 10 H -0.029 1.029 11 C -0.137 4.137 12 C -0.157 4.157 13 C -0.142 4.142 14 C -0.080 4.080 15 N -0.259 5.259 16 C -0.055 4.055 17 C -0.062 4.062 18 C -0.072 4.072 19 C -0.244 4.244 20 C -0.244 4.244 21 C -0.116 4.116 22 O -0.093 6.093 23 H 0.070 0.930 24 H 0.054 0.946 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.026 0.974 32 H 0.021 0.979 33 H 0.086 0.914 34 H 0.125 0.875 35 H 0.106 0.894 36 H 0.170 0.830 37 H 0.187 0.813 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges 8.997 -10.381 -2.823 14.024 hybrid contribution -0.226 1.413 -0.960 1.724 sum 8.770 -8.967 -3.783 13.101 Atomic orbital electron populations 1.70022 1.07162 1.27252 1.51426 1.25697 0.95666 1.02327 0.94932 0.85649 0.78381 0.79040 0.78824 1.19925 1.20939 1.19424 1.21472 0.93304 0.91177 1.50208 0.92121 1.18975 0.89018 0.88087 0.92095 1.02885 1.21445 0.98279 0.96580 0.97438 1.21626 0.97787 0.95785 1.00459 1.21530 0.96859 0.97983 0.97814 1.22237 0.96647 0.92221 0.96848 1.61992 1.18439 1.02537 1.42958 1.21872 0.93115 0.99545 0.90953 1.20084 0.92973 1.00311 0.92822 1.22620 0.99484 0.97412 0.87666 1.21918 0.97859 1.03860 1.00788 1.22162 1.03980 1.03022 0.95203 1.24802 0.87511 1.00802 0.98435 1.84002 1.44462 1.56251 1.24568 0.92988 0.94611 0.92068 0.91576 0.94369 0.91213 0.89668 0.89135 0.97379 0.97878 0.91383 0.87519 0.89444 0.83041 0.81283 0.74489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.70 11.33 21.45 0.24 -53.46 16 2 C 0.01 0.70 5.30 84.66 0.45 1.15 16 3 Si 0.96 44.23 29.54 68.60 2.03 46.26 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 5 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 7 C -0.52 -29.18 7.80 25.60 0.20 -28.98 16 8 H 0.06 3.34 6.31 -2.91 -0.02 3.32 16 9 C 0.23 11.67 1.83 44.19 0.08 11.76 16 10 H -0.05 -2.75 8.14 -2.39 -0.02 -2.77 16 11 C -0.10 -4.82 5.14 30.65 0.16 -4.66 16 12 C -0.12 -4.60 6.00 30.68 0.18 -4.42 16 13 C -0.10 -3.38 6.09 30.65 0.19 -3.19 16 14 C 0.05 1.72 5.29 86.33 0.46 2.17 16 15 N -0.53 -22.89 4.49 -875.51 -3.93 -26.82 16 16 C 0.07 2.96 4.71 86.30 0.41 3.37 16 17 C -0.02 -0.77 5.68 29.85 0.17 -0.60 16 18 C -0.02 -0.67 6.58 24.84 0.16 -0.51 16 19 C -0.23 -6.52 10.81 22.19 0.24 -6.28 16 20 C -0.22 -5.41 10.91 22.19 0.24 -5.17 16 21 C -0.05 -1.12 12.09 66.97 0.81 -0.31 16 22 O -0.20 -5.85 10.65 -2.55 -0.03 -5.87 16 23 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 24 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 25 H 0.06 3.36 6.09 -2.39 -0.01 3.35 16 26 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 27 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 28 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 29 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 30 H 0.09 2.66 6.21 -2.39 -0.01 2.64 16 31 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.00 0.13 8.12 -2.38 -0.02 0.11 16 33 H 0.07 3.07 5.81 -2.39 -0.01 3.06 16 34 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 35 H 0.09 2.45 6.43 -2.39 -0.02 2.44 16 36 H 0.15 4.11 8.06 -2.91 -0.02 4.08 16 37 H 0.17 3.06 8.06 -2.91 -0.02 3.04 16 38 H 0.24 3.07 8.06 -2.91 -0.02 3.05 16 Total: -1.00 -64.58 302.14 3.09 -61.49 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 1.03 Total: 14.07 kcal Atomic # 6 Polarization: -39.42 SS G_CDS: 3.75 Total: -35.67 kcal Atomic # 7 Polarization: -76.59 SS G_CDS: -3.68 Total: -80.27 kcal Atomic # 8 Polarization: -5.85 SS G_CDS: -0.03 Total: -5.87 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -64.58 3.09 -61.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260177370.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.286 kcal (2) G-P(sol) polarization free energy of solvation -64.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds