Wall clock time and date at job start Mon Mar 30 2020 07:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99451 * 2 1 4 4 C 1.39669 * 111.00247 * 123.95158 * 2 1 3 5 5 C 1.38948 * 120.06118 * 298.56225 * 4 2 1 6 6 C 1.38097 * 119.97236 * 180.02562 * 5 4 2 7 7 C 1.38262 * 120.09786 * 359.96843 * 6 5 4 8 8 C 1.38490 * 120.12747 * 0.05214 * 7 6 5 9 9 F 1.35102 * 119.98965 * 179.97438 * 8 7 6 10 10 C 1.38347 * 120.02374 * 359.67494 * 8 7 6 11 11 C 1.50697 * 120.04984 * 180.31952 * 10 8 7 12 12 C 1.50706 * 115.54691 * 118.98390 * 11 10 8 13 13 H 1.07996 * 119.99957 * 147.39489 * 12 11 10 14 14 C 1.37874 * 119.99891 * 327.39307 * 12 11 10 15 15 N 1.31518 * 120.00085 * 156.47653 * 14 12 11 16 16 Si 1.86798 * 120.00198 * 336.47821 * 14 12 11 17 17 H 1.48494 * 109.47236 * 90.99056 * 16 14 12 18 18 H 1.48497 * 109.47319 * 210.99056 * 16 14 12 19 19 H 1.48496 * 109.46921 * 330.99199 * 16 14 12 20 20 C 1.52998 * 117.50290 * 333.27394 * 11 10 8 21 21 C 1.52995 * 117.50251 * 264.64888 * 11 10 8 22 22 H 1.08999 * 109.47345 * 300.97498 * 1 2 3 23 23 H 1.08997 * 109.47284 * 60.97802 * 1 2 3 24 24 H 1.09004 * 109.46910 * 180.97815 * 1 2 3 25 25 H 1.08997 * 109.47060 * 187.64210 * 3 2 1 26 26 H 1.09001 * 109.47479 * 307.63959 * 3 2 1 27 27 H 1.08999 * 109.47311 * 67.64396 * 3 2 1 28 28 H 1.07995 * 120.01374 * 359.97287 * 5 4 2 29 29 H 1.07995 * 119.94613 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.93722 * 180.02562 * 7 6 5 31 31 H 0.97003 * 119.99921 * 184.99503 * 15 14 12 32 32 H 1.08994 * 117.49801 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.49345 * 145.01868 * 20 11 10 34 34 H 1.09002 * 117.50194 * 214.97974 * 21 11 10 35 35 H 1.08997 * 117.49942 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9695 -0.7282 1.0816 5 6 1.6822 -0.3301 2.3814 6 6 2.1786 -1.0511 3.4495 7 6 2.9607 -2.1694 3.2275 8 6 3.2500 -2.5697 1.9337 9 9 4.0150 -3.6626 1.7200 10 6 2.7508 -1.8544 0.8598 11 6 3.0592 -2.2936 -0.5483 12 6 1.8648 -2.6601 -1.3912 13 1 1.8782 -2.4767 -2.4554 14 6 0.7551 -3.2294 -0.8036 15 7 -0.4203 -3.1316 -1.3857 16 14 0.9208 -4.1397 0.8191 17 1 0.6968 -3.1943 1.9421 18 1 -0.0865 -5.2290 0.8808 19 1 2.2839 -4.7193 0.9245 20 6 4.3528 -3.0782 -0.7764 21 6 4.2433 -1.6283 -1.2526 22 1 -0.3634 0.5289 0.8811 23 1 -0.3634 0.4985 -0.8986 24 1 -0.3633 -1.0276 0.0175 25 1 3.0763 1.3458 -0.1367 26 1 1.5396 1.9356 -0.8138 27 1 1.7605 1.8508 0.9504 28 1 1.0717 0.5434 2.5564 29 1 1.9553 -0.7410 4.4596 30 1 3.3472 -2.7317 4.0648 31 1 -1.2125 -3.4683 -0.9384 32 1 4.9805 -3.2770 0.0921 33 1 4.3400 -3.8597 -1.5361 34 1 4.1587 -1.4560 -2.3256 35 1 4.7996 -0.8732 -0.6972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260220362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:46 Heat of formation + Delta-G solvation = 42.889466 kcal Electronic energy + Delta-G solvation = -19509.010735 eV Core-core repulsion = 16616.700248 eV Total energy + Delta-G solvation = -2892.310487 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -48.37608 -39.52259 -36.23038 -35.69790 -32.11901 -29.96966 -29.18360 -26.92697 -25.74055 -24.13390 -22.44435 -21.37798 -20.48666 -19.20472 -17.14518 -16.55083 -15.87238 -15.72004 -15.01827 -14.65545 -14.28292 -14.12718 -13.96032 -13.35195 -12.88636 -12.56212 -12.19856 -12.04306 -11.87621 -11.69054 -11.57814 -11.14690 -11.04739 -10.56847 -10.38229 -10.30891 -9.91637 -9.54378 -9.18571 -9.05368 -8.20288 -8.06393 -7.84581 -7.67966 -6.06515 -3.88029 1.60656 1.74586 3.33998 3.46939 3.58557 4.03076 4.38737 4.51658 4.84760 4.95787 5.25528 5.35537 5.44576 5.61213 5.66173 5.74306 5.78984 6.01498 6.06795 6.20592 6.24692 6.27573 6.36169 6.43864 6.56522 6.66580 6.70787 6.78821 6.88325 6.97654 7.20636 7.31955 7.35494 7.64917 7.86144 8.08023 8.58683 9.00599 9.61811 11.01643 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.015676 C = 0.013182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.403198 B = 1785.780033 C = 2123.521184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 N -0.475 5.475 3 C 0.032 3.968 4 C 0.142 3.858 5 C -0.169 4.169 6 C -0.101 4.101 7 C -0.167 4.167 8 C 0.088 3.912 9 F -0.130 7.130 10 C -0.038 4.038 11 C 0.064 3.936 12 C -0.454 4.454 13 H 0.077 0.923 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.823 3.177 17 H -0.270 1.270 18 H -0.296 1.296 19 H -0.246 1.246 20 C -0.222 4.222 21 C -0.171 4.171 22 H 0.007 0.993 23 H 0.067 0.933 24 H 0.091 0.909 25 H 0.064 0.936 26 H 0.068 0.932 27 H 0.018 0.982 28 H 0.119 0.881 29 H 0.123 0.877 30 H 0.127 0.873 31 H 0.261 0.739 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.110 6.624 7.700 10.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.194 5.194 3 C -0.115 4.115 4 C 0.047 3.953 5 C -0.190 4.190 6 C -0.120 4.120 7 C -0.186 4.186 8 C 0.068 3.932 9 F -0.109 7.109 10 C -0.040 4.040 11 C 0.063 3.937 12 C -0.491 4.491 13 H 0.095 0.905 14 C -0.107 4.107 15 N -0.516 5.516 16 Si 0.649 3.351 17 H -0.195 1.195 18 H -0.223 1.223 19 H -0.169 1.169 20 C -0.260 4.260 21 C -0.208 4.208 22 H 0.025 0.975 23 H 0.086 0.914 24 H 0.109 0.891 25 H 0.083 0.917 26 H 0.087 0.913 27 H 0.036 0.964 28 H 0.137 0.863 29 H 0.141 0.859 30 H 0.145 0.855 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.102 0.898 35 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 4.080 6.264 7.191 10.372 hybrid contribution -0.272 -0.360 1.705 1.764 sum 3.808 5.904 8.895 11.335 Atomic orbital electron populations 1.22430 0.85327 1.04236 0.98729 1.59268 1.08426 1.11718 1.40014 1.22420 1.00888 0.88610 0.99587 1.18326 0.95094 0.93551 0.88311 1.21675 1.02442 1.01363 0.93476 1.20610 0.97853 0.94981 0.98568 1.21013 1.02900 0.99557 0.95159 1.17503 0.95669 0.86409 0.93595 1.91434 1.72742 1.51266 1.95426 1.19621 0.95923 0.93364 0.95089 1.17739 0.89487 0.98332 0.88169 1.19989 0.95989 1.38540 0.94558 0.90492 1.24715 0.94783 0.95185 0.96044 1.69992 0.97811 1.44732 1.39055 0.87733 0.79826 0.81521 0.85973 1.19544 1.22300 1.16927 1.23569 1.05353 0.94069 1.02991 1.22684 1.03751 0.94682 0.99694 0.97464 0.91410 0.89056 0.91707 0.91294 0.96380 0.86274 0.85896 0.85522 0.92874 0.90127 0.89824 0.89829 0.91539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.78 9.27 60.06 0.56 1.33 16 2 N -0.47 -9.57 3.77 -186.87 -0.70 -10.27 16 3 C 0.03 0.51 9.45 60.07 0.57 1.08 16 4 C 0.14 2.93 4.42 -83.80 -0.37 2.56 16 5 C -0.17 -3.02 8.57 -39.37 -0.34 -3.35 16 6 C -0.10 -1.67 10.04 -39.62 -0.40 -2.07 16 7 C -0.17 -3.03 9.74 -39.48 -0.38 -3.42 16 8 C 0.09 1.89 4.35 -39.45 -0.17 1.71 16 9 F -0.13 -2.86 12.27 2.25 0.03 -2.83 16 10 C -0.04 -0.86 2.66 -104.36 -0.28 -1.14 16 11 C 0.06 1.53 1.10 -156.81 -0.17 1.36 16 12 C -0.45 -12.49 8.73 -34.44 -0.30 -12.79 16 13 H 0.08 2.31 8.06 -52.49 -0.42 1.88 16 14 C 0.10 2.67 4.21 -17.82 -0.07 2.60 16 15 N -0.88 -25.38 13.31 55.43 0.74 -24.64 16 16 Si 0.82 21.39 23.67 -169.99 -4.02 17.37 16 17 H -0.27 -6.86 6.50 56.52 0.37 -6.49 16 18 H -0.30 -7.85 7.11 56.52 0.40 -7.44 16 19 H -0.25 -6.40 5.41 56.52 0.31 -6.09 16 20 C -0.22 -4.97 9.01 -26.73 -0.24 -5.21 16 21 C -0.17 -3.65 9.94 -26.73 -0.27 -3.92 16 22 H 0.01 0.12 7.37 -51.93 -0.38 -0.26 16 23 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 24 H 0.09 2.14 6.27 -51.93 -0.33 1.81 16 25 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 26 H 0.07 0.99 8.11 -51.93 -0.42 0.57 16 27 H 0.02 0.25 7.14 -51.93 -0.37 -0.12 16 28 H 0.12 1.83 7.05 -52.49 -0.37 1.46 16 29 H 0.12 1.57 8.06 -52.49 -0.42 1.15 16 30 H 0.13 1.91 8.06 -52.49 -0.42 1.49 16 31 H 0.26 7.22 8.32 -40.82 -0.34 6.88 16 32 H 0.08 1.73 5.83 -51.93 -0.30 1.43 16 33 H 0.08 1.88 8.14 -51.93 -0.42 1.46 16 34 H 0.08 1.77 8.14 -51.93 -0.42 1.34 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 LS Contribution 278.47 15.07 4.20 4.20 Total: -1.00 -29.58 278.47 -6.45 -36.04 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -4.82 Total: 1.39 kcal Atomic # 6 Polarization: -19.37 SS G_CDS: -1.87 Total: -21.24 kcal Atomic # 7 Polarization: -34.95 SS G_CDS: 0.03 Total: -34.91 kcal Atomic # 9 Polarization: -2.86 SS G_CDS: 0.03 Total: -2.83 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.02 Total: 17.37 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -29.58 -6.45 -36.04 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.928 kcal (2) G-P(sol) polarization free energy of solvation -29.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.039 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds