Wall clock time and date at job start Mon Mar 30 2020 07:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46902 * 110.99451 * 2 1 4 4 C 1.39669 * 111.00247 * 123.95158 * 2 1 3 5 5 C 1.38948 * 120.06118 * 298.56225 * 4 2 1 6 6 C 1.38097 * 119.97236 * 180.02562 * 5 4 2 7 7 C 1.38262 * 120.09786 * 359.96843 * 6 5 4 8 8 C 1.38490 * 120.12747 * 0.05214 * 7 6 5 9 9 F 1.35102 * 119.98965 * 179.97438 * 8 7 6 10 10 C 1.38347 * 120.02374 * 359.67494 * 8 7 6 11 11 C 1.50697 * 120.04984 * 180.31952 * 10 8 7 12 12 C 1.50706 * 115.54691 * 118.98390 * 11 10 8 13 13 H 1.07996 * 119.99957 * 147.39489 * 12 11 10 14 14 C 1.37874 * 119.99891 * 327.39307 * 12 11 10 15 15 N 1.31518 * 120.00085 * 156.47653 * 14 12 11 16 16 Si 1.86798 * 120.00198 * 336.47821 * 14 12 11 17 17 H 1.48494 * 109.47236 * 90.99056 * 16 14 12 18 18 H 1.48497 * 109.47319 * 210.99056 * 16 14 12 19 19 H 1.48496 * 109.46921 * 330.99199 * 16 14 12 20 20 C 1.52998 * 117.50290 * 333.27394 * 11 10 8 21 21 C 1.52995 * 117.50251 * 264.64888 * 11 10 8 22 22 H 1.08999 * 109.47345 * 300.97498 * 1 2 3 23 23 H 1.08997 * 109.47284 * 60.97802 * 1 2 3 24 24 H 1.09004 * 109.46910 * 180.97815 * 1 2 3 25 25 H 1.08997 * 109.47060 * 187.64210 * 3 2 1 26 26 H 1.09001 * 109.47479 * 307.63959 * 3 2 1 27 27 H 1.08999 * 109.47311 * 67.64396 * 3 2 1 28 28 H 1.07995 * 120.01374 * 359.97287 * 5 4 2 29 29 H 1.07995 * 119.94613 * 179.97438 * 6 5 4 30 30 H 1.08002 * 119.93722 * 180.02562 * 7 6 5 31 31 H 0.97003 * 119.99921 * 184.99503 * 15 14 12 32 32 H 1.08994 * 117.49801 * 0.02562 * 20 11 10 33 33 H 1.09005 * 117.49345 * 145.01868 * 20 11 10 34 34 H 1.09002 * 117.50194 * 214.97974 * 21 11 10 35 35 H 1.08997 * 117.49942 * 0.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9695 -0.7282 1.0816 5 6 1.6822 -0.3301 2.3814 6 6 2.1786 -1.0511 3.4495 7 6 2.9607 -2.1694 3.2275 8 6 3.2500 -2.5697 1.9337 9 9 4.0150 -3.6626 1.7200 10 6 2.7508 -1.8544 0.8598 11 6 3.0592 -2.2936 -0.5483 12 6 1.8648 -2.6601 -1.3912 13 1 1.8782 -2.4767 -2.4554 14 6 0.7551 -3.2294 -0.8036 15 7 -0.4203 -3.1316 -1.3857 16 14 0.9208 -4.1397 0.8191 17 1 0.6968 -3.1943 1.9421 18 1 -0.0865 -5.2290 0.8808 19 1 2.2839 -4.7193 0.9245 20 6 4.3528 -3.0782 -0.7764 21 6 4.2433 -1.6283 -1.2526 22 1 -0.3634 0.5289 0.8811 23 1 -0.3634 0.4985 -0.8986 24 1 -0.3633 -1.0276 0.0175 25 1 3.0763 1.3458 -0.1367 26 1 1.5396 1.9356 -0.8138 27 1 1.7605 1.8508 0.9504 28 1 1.0717 0.5434 2.5564 29 1 1.9553 -0.7410 4.4596 30 1 3.3472 -2.7317 4.0648 31 1 -1.2125 -3.4683 -0.9384 32 1 4.9805 -3.2770 0.0921 33 1 4.3400 -3.8597 -1.5361 34 1 4.1587 -1.4560 -2.3256 35 1 4.7996 -0.8732 -0.6972 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260220362.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:45 Heat of formation + Delta-G solvation = 25.168598 kcal Electronic energy + Delta-G solvation = -19509.779170 eV Core-core repulsion = 16616.700248 eV Total energy + Delta-G solvation = -2893.078922 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.95782 -40.99502 -37.94606 -37.12506 -34.23615 -31.45462 -30.58252 -28.31132 -27.78010 -25.54780 -23.96977 -23.11151 -21.97634 -20.99490 -18.93371 -18.12865 -17.47241 -17.39296 -16.53665 -16.13392 -16.05724 -15.70202 -15.46836 -14.93669 -14.78612 -14.22230 -13.86848 -13.56612 -13.25891 -13.13768 -13.08693 -12.76921 -12.59847 -12.37813 -12.11928 -12.04727 -11.87182 -11.47225 -11.06856 -10.83324 -10.17605 -9.57373 -9.41724 -9.07007 -8.21910 -6.04159 0.17118 0.30930 1.27232 1.36602 1.50265 2.39688 2.60274 2.88674 3.00931 3.52325 3.61912 3.87630 4.02021 4.12333 4.28068 4.40035 4.46418 4.47921 4.67982 4.70192 4.73729 4.77613 4.85471 4.93789 5.04208 5.11291 5.21724 5.25923 5.30189 5.33513 5.51824 5.65163 5.81989 5.90486 6.27095 6.43950 6.65414 6.82249 7.46892 8.89613 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.016234 B = 0.015676 C = 0.013182 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.403198 B = 1785.780033 C = 2123.521184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.505 5.505 3 C 0.035 3.965 4 C 0.127 3.873 5 C -0.168 4.168 6 C -0.087 4.087 7 C -0.167 4.167 8 C 0.062 3.938 9 F -0.142 7.142 10 C -0.070 4.070 11 C 0.046 3.954 12 C -0.454 4.454 13 H 0.035 0.965 14 C 0.067 3.933 15 N -0.913 5.913 16 Si 0.874 3.126 17 H -0.257 1.257 18 H -0.309 1.309 19 H -0.249 1.249 20 C -0.219 4.219 21 C -0.154 4.154 22 H 0.036 0.964 23 H 0.067 0.933 24 H 0.051 0.949 25 H 0.062 0.938 26 H 0.078 0.922 27 H 0.042 0.958 28 H 0.147 0.853 29 H 0.171 0.829 30 H 0.158 0.842 31 H 0.261 0.739 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.664 8.120 10.675 14.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 N -0.225 5.225 3 C -0.112 4.112 4 C 0.033 3.967 5 C -0.188 4.188 6 C -0.105 4.105 7 C -0.186 4.186 8 C 0.042 3.958 9 F -0.121 7.121 10 C -0.072 4.072 11 C 0.045 3.955 12 C -0.491 4.491 13 H 0.053 0.947 14 C -0.134 4.134 15 N -0.552 5.552 16 Si 0.701 3.299 17 H -0.182 1.182 18 H -0.237 1.237 19 H -0.173 1.173 20 C -0.257 4.257 21 C -0.192 4.192 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.097 0.903 27 H 0.060 0.940 28 H 0.165 0.835 29 H 0.188 0.812 30 H 0.175 0.825 31 H 0.070 0.930 32 H 0.111 0.889 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 4.656 7.775 10.169 13.621 hybrid contribution -0.416 -0.750 0.745 1.136 sum 4.240 7.025 10.914 13.654 Atomic orbital electron populations 1.22255 0.85654 1.02005 1.00074 1.59128 1.08398 1.13982 1.41007 1.22448 1.00664 0.86784 1.01261 1.18529 0.95114 0.93345 0.89710 1.22017 1.02140 1.02179 0.92476 1.21183 0.95494 0.93349 1.00457 1.21449 1.02445 1.00104 0.94554 1.17855 0.96622 0.86502 0.94817 1.91390 1.73164 1.51894 1.95617 1.19568 0.98377 0.95121 0.94126 1.17627 0.88506 0.99793 0.89600 1.19999 0.97692 1.38249 0.93144 0.94688 1.25073 0.94422 0.95592 0.98272 1.70074 0.98366 1.46279 1.40452 0.86930 0.78795 0.80153 0.83995 1.18192 1.23741 1.17300 1.23507 1.04602 0.94413 1.03133 1.22670 1.02420 0.94581 0.99489 0.94586 0.91455 0.93051 0.91874 0.90328 0.94004 0.83499 0.81167 0.82451 0.92962 0.88943 0.90856 0.90363 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 1.80 9.27 127.69 1.18 2.98 16 2 N -0.50 -19.63 3.77 -745.13 -2.81 -22.44 16 3 C 0.03 1.02 9.45 127.69 1.21 2.22 16 4 C 0.13 4.98 4.42 38.21 0.17 5.15 16 5 C -0.17 -5.24 8.57 22.41 0.19 -5.05 16 6 C -0.09 -2.38 10.04 22.24 0.22 -2.15 16 7 C -0.17 -5.32 9.74 22.34 0.22 -5.10 16 8 C 0.06 2.49 4.35 22.36 0.10 2.59 16 9 F -0.14 -6.02 12.27 44.97 0.55 -5.47 16 10 C -0.07 -3.05 2.66 -19.69 -0.05 -3.11 16 11 C 0.05 2.20 1.10 -53.68 -0.06 2.15 16 12 C -0.45 -25.74 8.73 25.60 0.22 -25.52 16 13 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 14 C 0.07 3.79 4.21 84.65 0.36 4.15 16 15 N -0.91 -54.40 13.31 21.45 0.29 -54.12 16 16 Si 0.87 44.88 23.67 68.60 1.62 46.51 16 17 H -0.26 -12.47 6.50 99.48 0.65 -11.83 16 18 H -0.31 -16.25 7.11 99.48 0.71 -15.54 16 19 H -0.25 -12.79 5.41 99.48 0.54 -12.25 16 20 C -0.22 -9.79 9.01 30.59 0.28 -9.51 16 21 C -0.15 -6.56 9.94 30.59 0.30 -6.26 16 22 H 0.04 1.13 7.37 -2.39 -0.02 1.12 16 23 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 24 H 0.05 2.40 6.27 -2.39 -0.01 2.39 16 25 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 26 H 0.08 2.10 8.11 -2.39 -0.02 2.08 16 27 H 0.04 1.02 7.14 -2.39 -0.02 1.00 16 28 H 0.15 3.70 7.05 -2.91 -0.02 3.68 16 29 H 0.17 3.08 8.06 -2.91 -0.02 3.06 16 30 H 0.16 3.95 8.06 -2.91 -0.02 3.93 16 31 H 0.26 14.86 8.32 -92.71 -0.77 14.09 16 32 H 0.09 3.90 5.83 -2.39 -0.01 3.89 16 33 H 0.07 3.36 8.14 -2.38 -0.02 3.34 16 34 H 0.08 3.35 8.14 -2.39 -0.02 3.33 16 35 H 0.09 3.32 8.14 -2.39 -0.02 3.30 16 Total: -1.00 -65.73 278.47 4.84 -60.89 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 0.85 Total: 12.08 kcal Atomic # 6 Polarization: -41.79 SS G_CDS: 4.34 Total: -37.45 kcal Atomic # 7 Polarization: -74.03 SS G_CDS: -2.52 Total: -76.56 kcal Atomic # 9 Polarization: -6.02 SS G_CDS: 0.55 Total: -5.47 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 1.62 Total: 46.51 kcal Total: -65.73 4.84 -60.89 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260220362.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.062 kcal (2) G-P(sol) polarization free energy of solvation -65.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds