Wall clock time and date at job start Mon Mar 30 2020 07:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48500 * 109.46816 * 269.99669 * 3 2 1 5 5 H 1.48500 * 109.47089 * 29.99704 * 3 2 1 6 6 H 1.48498 * 109.47006 * 149.99817 * 3 2 1 7 7 C 1.37876 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00554 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99732 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.78640 * 61.79945 * 9 7 2 11 11 C 1.54597 * 110.72575 * 298.54642 * 9 7 2 12 12 C 1.53990 * 105.14143 * 219.68700 * 11 9 7 13 13 N 1.47907 * 107.05675 * 358.77466 * 12 11 9 14 14 C 1.46900 * 110.99845 * 145.84878 * 13 12 11 15 15 C 1.52995 * 109.47422 * 69.87288 * 14 13 12 16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47332 * 179.97438 * 16 15 14 18 18 C 1.34519 * 125.79103 * 89.71185 * 17 16 15 19 19 C 1.41380 * 106.84053 * 179.88939 * 18 17 16 20 20 C 1.34515 * 106.84217 * 0.37641 * 19 18 17 21 21 O 1.34300 * 108.41783 * 359.76886 * 20 19 18 22 22 C 1.48529 * 105.81986 * 25.32941 * 13 12 11 23 23 H 0.96995 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.30714 * 338.60068 * 11 9 7 25 25 H 1.09005 * 110.30628 * 100.76635 * 11 9 7 26 26 H 1.08996 * 109.92296 * 118.12992 * 12 11 9 27 27 H 1.09002 * 109.91601 * 239.42291 * 12 11 9 28 28 H 1.08999 * 109.46867 * 189.87659 * 14 13 12 29 29 H 1.09001 * 109.46877 * 309.86959 * 14 13 12 30 30 H 1.08999 * 109.47403 * 300.00043 * 15 14 13 31 31 H 1.09001 * 109.47364 * 59.99968 * 15 14 13 32 32 H 1.09000 * 109.46726 * 299.99752 * 16 15 14 33 33 H 1.09001 * 109.46995 * 59.99645 * 16 15 14 34 34 H 1.08006 * 126.57535 * 0.03062 * 18 17 16 35 35 H 1.08001 * 126.57735 * 180.17063 * 19 18 17 36 36 H 1.07995 * 125.78923 * 179.75316 * 20 19 18 37 37 H 1.09002 * 110.67056 * 202.35534 * 22 13 12 38 38 H 1.08999 * 110.66437 * 79.23225 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6409 -2.5936 -0.8978 11 6 0.3786 -2.6272 1.2704 12 6 0.5063 -4.1007 1.6992 13 7 1.3765 -4.7676 0.7065 14 6 2.1981 -5.8071 1.3408 15 6 1.3057 -6.9762 1.7620 16 6 2.1613 -8.0586 2.4232 17 6 1.2822 -9.2099 2.8386 18 6 0.9753 -10.2785 2.0814 19 6 0.1334 -11.1047 2.8608 20 6 -0.0307 -10.4875 4.0446 21 8 0.6674 -9.3404 4.0255 22 6 2.2269 -3.6957 0.1286 23 1 -0.4850 0.8400 -0.0004 24 1 0.7544 -1.9708 2.0553 25 1 -0.6601 -2.3884 1.0414 26 1 0.9580 -4.1615 2.6893 27 1 -0.4768 -4.5716 1.7071 28 1 2.9485 -6.1593 0.6330 29 1 2.6933 -5.3931 2.2192 30 1 0.5553 -6.6240 2.4698 31 1 0.8105 -7.3902 0.8836 32 1 2.9119 -8.4110 1.7157 33 1 2.6562 -7.6444 3.3016 34 1 1.3100 -10.4699 1.0724 35 1 -0.2982 -12.0484 2.5616 36 1 -0.6235 -10.8524 4.8703 37 1 2.6050 -3.9903 -0.8504 38 1 3.0486 -3.4516 0.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:35 Heat of formation + Delta-G solvation = 2.876366 kcal Electronic energy + Delta-G solvation = -17573.376428 eV Core-core repulsion = 14802.791148 eV Total energy + Delta-G solvation = -2770.585281 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.63282 -38.17633 -35.00625 -33.13744 -32.70167 -30.70100 -28.42400 -28.15947 -25.40004 -23.82560 -21.84440 -21.75487 -20.41698 -19.90973 -19.25560 -17.42793 -16.29803 -16.06147 -15.48201 -14.96493 -14.69502 -14.42663 -13.94729 -13.37358 -12.92486 -12.82014 -12.74745 -12.50679 -12.23987 -11.88348 -11.67170 -11.23151 -11.03703 -10.85269 -10.72398 -10.55261 -10.33350 -10.16745 -10.00742 -9.61597 -9.19083 -8.75071 -8.51736 -8.38289 -7.72778 -6.00629 -4.04138 1.64759 2.52317 2.91763 3.30841 3.37597 3.40382 4.41030 4.51016 4.72399 4.87501 4.92694 5.10926 5.27116 5.33981 5.40240 5.53024 5.65771 5.71824 5.82754 5.88160 5.89348 6.05056 6.05828 6.23825 6.30374 6.37651 6.42989 6.48008 6.58472 6.87636 7.06113 7.16815 7.20949 7.61284 7.69630 7.77244 7.90213 8.05648 8.46188 8.98381 9.60009 11.09125 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.062059 B = 0.003444 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.077381 B = 8127.925625 C = 8277.530329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.052 3.948 10 H 0.036 0.964 11 C -0.102 4.102 12 C 0.034 3.966 13 N -0.523 5.523 14 C 0.048 3.952 15 C -0.110 4.110 16 C -0.041 4.041 17 C 0.000 4.000 18 C -0.217 4.217 19 C -0.214 4.214 20 C -0.050 4.050 21 O -0.177 6.177 22 C 0.041 3.959 23 H 0.260 0.740 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.027 0.973 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.031 0.969 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.062 0.938 38 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.744 -18.387 6.253 19.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.555 4.555 8 H 0.074 0.926 9 C 0.033 3.967 10 H 0.054 0.946 11 C -0.141 4.141 12 C -0.094 4.094 13 N -0.247 5.247 14 C -0.081 4.081 15 C -0.147 4.147 16 C -0.079 4.079 17 C -0.050 4.050 18 C -0.236 4.236 19 C -0.233 4.233 20 C -0.118 4.118 21 O -0.073 6.073 22 C -0.086 4.086 23 H 0.070 0.930 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.049 0.951 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.164 0.836 36 H 0.217 0.783 37 H 0.081 0.919 38 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.300 -18.313 6.089 19.343 hybrid contribution 0.753 0.988 0.603 1.381 sum 2.053 -17.325 6.693 18.686 Atomic orbital electron populations 1.69980 1.05869 1.26469 1.50218 1.24972 0.94842 0.99011 0.95067 0.86626 0.79846 0.83601 0.78102 1.20664 1.21281 1.19981 1.21099 0.92771 0.90427 1.51211 0.92647 1.19529 0.92060 0.90881 0.94189 0.94618 1.22317 1.01399 0.90630 0.99739 1.22987 0.96514 0.97112 0.92769 1.64716 1.19119 1.11406 1.29437 1.22203 0.95287 0.93131 0.97457 1.21563 0.98213 0.94190 1.00782 1.20188 0.95526 0.91049 1.01107 1.22571 0.99551 0.98877 0.83979 1.21600 1.04337 0.95973 1.01668 1.21826 1.04061 1.02472 0.94915 1.23986 1.00659 0.86301 1.00822 1.84028 1.50679 1.37590 1.34969 1.23368 0.95789 0.91862 0.97605 0.93047 0.92809 0.92151 0.95435 0.92199 0.91311 0.95129 0.91677 0.90757 0.88786 0.90201 0.83521 0.83648 0.78337 0.91911 0.94794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.60 12.44 55.43 0.69 -24.91 16 2 C 0.06 1.75 5.33 -17.82 -0.10 1.66 16 3 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 4 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 7 C -0.52 -14.21 8.42 -34.44 -0.29 -14.50 16 8 H 0.06 1.50 7.78 -52.49 -0.41 1.09 16 9 C 0.05 1.33 2.99 -89.91 -0.27 1.06 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.10 -2.44 5.50 -25.38 -0.14 -2.58 16 12 C 0.03 0.67 5.79 -2.75 -0.02 0.66 16 13 N -0.52 -10.00 5.27 -230.46 -1.21 -11.21 16 14 C 0.05 0.73 4.76 -3.83 -0.02 0.71 16 15 C -0.11 -1.44 5.25 -26.73 -0.14 -1.58 16 16 C -0.04 -0.44 5.75 -27.89 -0.16 -0.60 16 17 C 0.00 0.01 6.58 -35.62 -0.23 -0.23 16 18 C -0.22 -2.42 10.81 -39.70 -0.43 -2.85 16 19 C -0.21 -2.16 10.91 -39.70 -0.43 -2.59 16 20 C -0.05 -0.50 12.09 29.42 0.36 -0.14 16 21 O -0.18 -2.21 10.65 5.72 0.06 -2.15 16 22 C 0.04 0.87 5.95 -1.90 -0.01 0.86 16 23 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 24 H 0.05 1.35 7.84 -51.93 -0.41 0.95 16 25 H 0.06 1.52 8.05 -51.93 -0.42 1.10 16 26 H 0.03 0.51 7.57 -51.93 -0.39 0.12 16 27 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 29 H 0.03 0.46 7.82 -51.93 -0.41 0.06 16 30 H 0.06 0.93 7.52 -51.93 -0.39 0.54 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.15 1.40 8.06 -52.48 -0.42 0.98 16 35 H 0.15 1.12 8.06 -52.49 -0.42 0.70 16 36 H 0.20 1.19 8.06 -52.49 -0.42 0.77 16 37 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.03 0.72 7.92 -51.93 -0.41 0.31 16 LS Contribution 313.28 15.07 4.72 4.72 Total: -1.00 -29.81 313.28 -8.84 -38.65 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: -6.20 Total: -1.23 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.88 Total: -20.13 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: -0.52 Total: -36.13 kcal Atomic # 8 Polarization: -2.21 SS G_CDS: 0.06 Total: -2.15 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -29.81 -8.84 -38.65 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.527 kcal (2) G-P(sol) polarization free energy of solvation -29.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.650 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds