Wall clock time and date at job start Mon Mar 30 2020 07:37:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86801 * 120.00062 * 2 1 4 4 H 1.48500 * 109.46816 * 269.99669 * 3 2 1 5 5 H 1.48500 * 109.47089 * 29.99704 * 3 2 1 6 6 H 1.48498 * 109.47006 * 149.99817 * 3 2 1 7 7 C 1.37876 * 120.00216 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00554 * 180.02562 * 7 2 1 9 9 C 1.50707 * 119.99732 * 0.02562 * 7 2 1 10 10 H 1.09000 * 110.78640 * 61.79945 * 9 7 2 11 11 C 1.54597 * 110.72575 * 298.54642 * 9 7 2 12 12 C 1.53990 * 105.14143 * 219.68700 * 11 9 7 13 13 N 1.47907 * 107.05675 * 358.77466 * 12 11 9 14 14 C 1.46900 * 110.99845 * 145.84878 * 13 12 11 15 15 C 1.52995 * 109.47422 * 69.87288 * 14 13 12 16 16 C 1.52998 * 109.47345 * 180.02562 * 15 14 13 17 17 C 1.50697 * 109.47332 * 179.97438 * 16 15 14 18 18 C 1.34519 * 125.79103 * 89.71185 * 17 16 15 19 19 C 1.41380 * 106.84053 * 179.88939 * 18 17 16 20 20 C 1.34515 * 106.84217 * 0.37641 * 19 18 17 21 21 O 1.34300 * 108.41783 * 359.76886 * 20 19 18 22 22 C 1.48529 * 105.81986 * 25.32941 * 13 12 11 23 23 H 0.96995 * 119.99865 * 0.02562 * 1 2 3 24 24 H 1.09005 * 110.30714 * 338.60068 * 11 9 7 25 25 H 1.09005 * 110.30628 * 100.76635 * 11 9 7 26 26 H 1.08996 * 109.92296 * 118.12992 * 12 11 9 27 27 H 1.09002 * 109.91601 * 239.42291 * 12 11 9 28 28 H 1.08999 * 109.46867 * 189.87659 * 14 13 12 29 29 H 1.09001 * 109.46877 * 309.86959 * 14 13 12 30 30 H 1.08999 * 109.47403 * 300.00043 * 15 14 13 31 31 H 1.09001 * 109.47364 * 59.99968 * 15 14 13 32 32 H 1.09000 * 109.46726 * 299.99752 * 16 15 14 33 33 H 1.09001 * 109.46995 * 59.99645 * 16 15 14 34 34 H 1.08006 * 126.57535 * 0.03062 * 18 17 16 35 35 H 1.08001 * 126.57735 * 180.17063 * 19 18 17 36 36 H 1.07995 * 125.78923 * 179.75316 * 20 19 18 37 37 H 1.09002 * 110.67056 * 202.35534 * 22 13 12 38 38 H 1.08999 * 110.66437 * 79.23225 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6409 -2.5936 -0.8978 11 6 0.3786 -2.6272 1.2704 12 6 0.5063 -4.1007 1.6992 13 7 1.3765 -4.7676 0.7065 14 6 2.1981 -5.8071 1.3408 15 6 1.3057 -6.9762 1.7620 16 6 2.1613 -8.0586 2.4232 17 6 1.2822 -9.2099 2.8386 18 6 0.9753 -10.2785 2.0814 19 6 0.1334 -11.1047 2.8608 20 6 -0.0307 -10.4875 4.0446 21 8 0.6674 -9.3404 4.0255 22 6 2.2269 -3.6957 0.1286 23 1 -0.4850 0.8400 -0.0004 24 1 0.7544 -1.9708 2.0553 25 1 -0.6601 -2.3884 1.0414 26 1 0.9580 -4.1615 2.6893 27 1 -0.4768 -4.5716 1.7071 28 1 2.9485 -6.1593 0.6330 29 1 2.6933 -5.3931 2.2192 30 1 0.5553 -6.6240 2.4698 31 1 0.8105 -7.3902 0.8836 32 1 2.9119 -8.4110 1.7157 33 1 2.6562 -7.6444 3.3016 34 1 1.3100 -10.4699 1.0724 35 1 -0.2982 -12.0484 2.5616 36 1 -0.6235 -10.8524 4.8703 37 1 2.6050 -3.9903 -0.8504 38 1 3.0486 -3.4516 0.8019 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224901.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:35 Heat of formation + Delta-G solvation = -14.606572 kcal Electronic energy + Delta-G solvation = -17574.134545 eV Core-core repulsion = 14802.791148 eV Total energy + Delta-G solvation = -2771.343398 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.43180 -39.79185 -36.27029 -34.71634 -33.76364 -32.19756 -29.96753 -29.62433 -26.86055 -25.46587 -23.02281 -22.62679 -21.61686 -21.25093 -20.98980 -18.43044 -18.12034 -16.97108 -16.83206 -16.67397 -16.09727 -15.83106 -15.21595 -14.78552 -14.22372 -13.98470 -13.90434 -13.69494 -13.46883 -13.17982 -13.04664 -12.99430 -12.75803 -12.50907 -12.33801 -12.06596 -11.91933 -11.56617 -11.52637 -11.08547 -10.81676 -10.80416 -10.50634 -9.32530 -9.25831 -8.13351 -6.24279 0.84661 1.41993 1.42154 1.52656 1.74594 2.17588 2.42708 3.16539 3.21792 3.76438 4.02205 4.11036 4.18208 4.18734 4.28276 4.35558 4.46856 4.55545 4.57138 4.66379 4.73568 4.81202 4.88535 4.97817 5.02496 5.04917 5.20050 5.25762 5.27913 5.31664 5.37498 5.60978 5.67001 5.80478 5.86956 6.02946 6.26808 6.32063 6.40296 6.86127 7.43782 8.96109 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.062059 B = 0.003444 C = 0.003382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 451.077381 B = 8127.925625 C = 8277.530329 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.266 1.266 7 C -0.534 4.534 8 H 0.057 0.943 9 C 0.041 3.959 10 H 0.001 0.999 11 C -0.094 4.094 12 C 0.046 3.954 13 N -0.529 5.529 14 C 0.048 3.952 15 C -0.098 4.098 16 C -0.033 4.033 17 C -0.024 4.024 18 C -0.225 4.225 19 C -0.228 4.228 20 C -0.052 4.052 21 O -0.198 6.198 22 C 0.054 3.946 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.035 0.965 26 H 0.042 0.958 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.069 0.931 32 H 0.114 0.886 33 H 0.084 0.916 34 H 0.159 0.841 35 H 0.167 0.833 36 H 0.233 0.767 37 H 0.071 0.929 38 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.804 -19.686 6.834 21.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.558 5.558 2 C -0.188 4.188 3 Si 0.783 3.217 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.191 1.191 7 C -0.573 4.573 8 H 0.075 0.925 9 C 0.022 3.978 10 H 0.019 0.981 11 C -0.133 4.133 12 C -0.082 4.082 13 N -0.253 5.253 14 C -0.080 4.080 15 C -0.136 4.136 16 C -0.070 4.070 17 C -0.074 4.074 18 C -0.244 4.244 19 C -0.246 4.246 20 C -0.119 4.119 21 O -0.095 6.095 22 C -0.073 4.073 23 H 0.069 0.931 24 H 0.052 0.948 25 H 0.054 0.946 26 H 0.060 0.940 27 H 0.088 0.912 28 H 0.105 0.895 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.132 0.868 33 H 0.103 0.897 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges 2.372 -19.632 6.670 20.869 hybrid contribution 0.376 1.324 0.412 1.437 sum 2.748 -18.307 7.082 19.821 Atomic orbital electron populations 1.70113 1.07355 1.27289 1.51030 1.25797 0.95677 1.02584 0.94694 0.85570 0.78716 0.79172 0.78289 1.20046 1.21026 1.19069 1.21456 0.93046 0.91688 1.51065 0.92511 1.19500 0.92845 0.92240 0.93223 0.98098 1.22106 0.99375 0.93258 0.98555 1.22832 0.97632 0.94246 0.93491 1.64700 1.19465 1.11178 1.29931 1.22318 0.95501 0.92356 0.97850 1.21419 0.97837 0.94054 1.00318 1.20127 0.95250 0.90115 1.01543 1.22784 1.00606 0.99705 0.84292 1.21934 1.04191 0.95968 1.02269 1.22192 1.04125 1.03364 0.94962 1.24746 0.99920 0.85337 1.01881 1.84016 1.51284 1.38764 1.35431 1.23130 0.94885 0.90912 0.98423 0.93054 0.94813 0.94613 0.93981 0.91162 0.89484 0.94691 0.93100 0.91270 0.86800 0.89731 0.82347 0.81550 0.75070 0.91013 0.94645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.29 12.44 21.45 0.27 -54.02 16 2 C 0.01 0.65 5.33 84.65 0.45 1.10 16 3 Si 0.96 43.83 29.54 68.60 2.03 45.86 16 4 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 5 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.53 -29.77 8.42 25.60 0.22 -29.55 16 8 H 0.06 3.07 7.78 -2.91 -0.02 3.05 16 9 C 0.04 2.13 2.99 -10.33 -0.03 2.09 16 10 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 11 C -0.09 -4.61 5.50 31.47 0.17 -4.43 16 12 C 0.05 1.79 5.79 86.44 0.50 2.29 16 13 N -0.53 -19.58 5.27 -883.04 -4.65 -24.23 16 14 C 0.05 1.34 4.76 86.30 0.41 1.75 16 15 C -0.10 -2.39 5.25 30.59 0.16 -2.23 16 16 C -0.03 -0.64 5.75 29.85 0.17 -0.47 16 17 C -0.02 -0.54 6.58 24.83 0.16 -0.38 16 18 C -0.22 -4.63 10.81 22.19 0.24 -4.39 16 19 C -0.23 -4.13 10.91 22.19 0.24 -3.89 16 20 C -0.05 -0.93 12.09 66.97 0.81 -0.12 16 21 O -0.20 -4.68 10.65 -2.43 -0.03 -4.70 16 22 C 0.05 2.26 5.95 86.65 0.52 2.78 16 23 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 24 H 0.03 1.73 7.84 -2.38 -0.02 1.72 16 25 H 0.03 1.87 8.05 -2.38 -0.02 1.85 16 26 H 0.04 1.52 7.57 -2.39 -0.02 1.50 16 27 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 28 H 0.09 2.14 8.11 -2.39 -0.02 2.12 16 29 H 0.03 0.97 7.82 -2.39 -0.02 0.95 16 30 H 0.05 1.38 7.52 -2.39 -0.02 1.36 16 31 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 32 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 35 H 0.17 2.16 8.06 -2.91 -0.02 2.13 16 36 H 0.23 2.14 8.06 -2.91 -0.02 2.12 16 37 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 38 H 0.04 1.47 7.92 -2.39 -0.02 1.45 16 Total: -1.00 -64.65 313.28 2.65 -62.00 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.01 Total: 10.55 kcal Atomic # 6 Polarization: -39.47 SS G_CDS: 4.02 Total: -35.45 kcal Atomic # 7 Polarization: -73.87 SS G_CDS: -4.38 Total: -78.25 kcal Atomic # 8 Polarization: -4.68 SS G_CDS: -0.03 Total: -4.70 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.86 kcal Total: -64.65 2.65 -62.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224901.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.395 kcal (2) G-P(sol) polarization free energy of solvation -64.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds