Wall clock time and date at job start Mon Mar 30 2020 07:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47333 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47187 * 60.00186 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.64440 * 298.29941 * 9 7 2 11 11 C 1.54589 * 110.72726 * 61.45628 * 9 7 2 12 12 C 1.53987 * 105.14285 * 140.49179 * 11 9 7 13 13 N 1.47900 * 107.22465 * 1.12525 * 12 11 9 14 14 C 1.46901 * 111.00212 * 214.25128 * 13 12 11 15 15 C 1.52999 * 109.47321 * 174.71813 * 14 13 12 16 16 C 1.52993 * 109.47187 * 174.72954 * 15 14 13 17 17 C 1.50703 * 109.47423 * 180.02562 * 16 15 14 18 18 C 1.34520 * 125.78630 * 90.00186 * 17 16 15 19 19 C 1.41380 * 106.84028 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83907 * 359.97438 * 19 18 17 21 21 O 1.34301 * 125.79208 * 269.69809 * 17 16 15 22 22 C 1.48808 * 105.68005 * 334.90615 * 13 12 11 23 23 H 0.97001 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.30545 * 21.57224 * 11 9 7 25 25 H 1.08998 * 110.39417 * 259.45361 * 11 9 7 26 26 H 1.09006 * 109.92095 * 120.57602 * 12 11 9 27 27 H 1.09005 * 109.92108 * 241.67800 * 12 11 9 28 28 H 1.08996 * 109.47472 * 294.72308 * 14 13 12 29 29 H 1.09001 * 109.46486 * 54.72284 * 14 13 12 30 30 H 1.08996 * 109.47645 * 294.73390 * 15 14 13 31 31 H 1.09008 * 109.46889 * 54.73595 * 15 14 13 32 32 H 1.09000 * 109.47497 * 300.00336 * 16 15 14 33 33 H 1.09003 * 109.47151 * 60.00610 * 16 15 14 34 34 H 1.07999 * 126.57849 * 359.96631 * 18 17 16 35 35 H 1.08002 * 126.58301 * 180.02562 * 19 18 17 36 36 H 1.08006 * 125.78818 * 180.02562 * 20 19 18 37 37 H 1.09000 * 110.51946 * 280.53939 * 22 13 12 38 38 H 1.09004 * 110.84190 * 157.56063 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6403 -2.5903 0.8978 11 6 0.3785 -2.6272 -1.2703 12 6 0.5025 -4.1017 -1.6965 13 7 1.3723 -4.7723 -0.7059 14 6 2.1905 -5.8130 -1.3427 15 6 3.1677 -6.3919 -0.3176 16 6 3.9278 -7.5634 -0.9426 17 6 4.8899 -8.1340 0.0672 18 6 4.6192 -9.1192 0.9424 19 6 5.7978 -9.3360 1.6924 20 6 6.7184 -8.4709 1.2304 21 8 6.1647 -7.7494 0.2423 22 6 2.2238 -3.6984 -0.1262 23 1 -0.4850 0.8400 0.0004 24 1 0.7562 -1.9731 -2.0563 25 1 -0.6597 -2.3849 -1.0439 26 1 -0.4817 -4.5702 -1.7038 27 1 0.9512 -4.1653 -2.6879 28 1 1.5431 -6.6065 -1.7160 29 1 2.7488 -5.3791 -2.1722 30 1 3.8751 -5.6204 -0.0139 31 1 2.6147 -6.7415 0.5544 32 1 3.2203 -8.3350 -1.2463 33 1 4.4807 -7.2139 -1.8146 34 1 3.6811 -9.6431 1.0517 35 1 5.9333 -10.0583 2.4839 36 1 7.7324 -8.3759 1.5900 37 1 3.0464 -3.4576 -0.7997 38 1 2.6031 -3.9904 0.8531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260224904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:40 Heat of formation + Delta-G solvation = 3.212651 kcal Electronic energy + Delta-G solvation = -17697.470832 eV Core-core repulsion = 14926.900134 eV Total energy + Delta-G solvation = -2770.570698 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.59118 -38.18325 -34.95985 -33.10887 -32.69616 -30.69508 -28.64630 -27.84557 -25.30227 -24.11971 -21.80223 -21.55978 -20.39552 -19.88696 -19.26822 -17.39413 -16.32317 -16.03226 -15.41648 -14.94847 -14.72791 -14.37187 -13.92321 -13.41502 -12.88920 -12.80427 -12.67972 -12.43335 -12.21467 -12.01392 -11.65795 -11.24125 -11.05335 -10.76934 -10.64367 -10.51150 -10.41818 -10.14828 -9.96286 -9.61103 -9.18857 -8.73750 -8.48092 -8.38304 -7.71777 -6.00491 -4.03699 1.68889 2.56241 2.95968 3.30091 3.38219 3.42141 4.42681 4.52621 4.73486 4.90844 4.96413 5.13983 5.27313 5.32897 5.42125 5.57760 5.65327 5.75454 5.84235 5.88074 5.89955 6.08601 6.10403 6.21558 6.28341 6.40423 6.46683 6.49508 6.58936 6.89052 7.10195 7.16873 7.20462 7.60336 7.69842 7.77497 7.90657 8.05908 8.46806 8.99159 9.60514 11.09345 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.004172 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.912338 B = 6709.422981 C = 7387.251475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.889 3.111 4 H -0.273 1.273 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.056 0.944 9 C 0.051 3.949 10 H 0.035 0.965 11 C -0.102 4.102 12 C 0.034 3.966 13 N -0.523 5.523 14 C 0.050 3.950 15 C -0.114 4.114 16 C -0.040 4.040 17 C 0.000 4.000 18 C -0.216 4.216 19 C -0.214 4.214 20 C -0.049 4.049 21 O -0.176 6.176 22 C 0.041 3.959 23 H 0.259 0.741 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.061 0.939 27 H 0.027 0.973 28 H 0.067 0.933 29 H 0.029 0.971 30 H 0.068 0.932 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.147 0.853 35 H 0.146 0.854 36 H 0.200 0.800 37 H 0.033 0.967 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.204 -16.441 -1.054 18.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.198 1.198 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.554 4.554 8 H 0.074 0.926 9 C 0.032 3.968 10 H 0.054 0.946 11 C -0.140 4.140 12 C -0.094 4.094 13 N -0.248 5.248 14 C -0.079 4.079 15 C -0.151 4.151 16 C -0.077 4.077 17 C -0.050 4.050 18 C -0.235 4.235 19 C -0.233 4.233 20 C -0.117 4.117 21 O -0.072 6.072 22 C -0.086 4.086 23 H 0.069 0.931 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.045 0.955 28 H 0.085 0.915 29 H 0.047 0.953 30 H 0.087 0.913 31 H 0.094 0.906 32 H 0.112 0.888 33 H 0.098 0.902 34 H 0.165 0.835 35 H 0.163 0.837 36 H 0.217 0.783 37 H 0.051 0.949 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.875 -16.361 -0.833 18.177 hybrid contribution 0.936 1.076 -0.446 1.495 sum 8.811 -15.285 -1.279 17.689 Atomic orbital electron populations 1.69989 1.05864 1.26343 1.50375 1.24965 0.94834 0.99000 0.95073 0.86577 0.80171 0.83943 0.77559 1.19812 1.21089 1.21000 1.21137 0.92820 0.90419 1.51016 0.92615 1.19537 0.92141 0.90951 0.94169 0.94641 1.22305 1.01433 0.90506 0.99780 1.22961 0.96427 0.97219 0.92775 1.64824 1.19038 1.11489 1.29402 1.22201 0.94773 0.95760 0.95172 1.21616 0.97806 0.96411 0.99302 1.20174 0.94153 0.98624 0.94792 1.22556 0.83395 0.97908 1.01147 1.21589 1.00334 1.01930 0.99696 1.21822 0.93987 1.03456 1.04055 1.23992 0.99890 0.95521 0.92279 1.84034 1.24189 1.52986 1.46002 1.23408 0.95722 0.91771 0.97670 0.93115 0.92807 0.92095 0.92093 0.95475 0.91468 0.95251 0.91338 0.90623 0.88847 0.90210 0.83548 0.83653 0.78331 0.94858 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.62 12.44 55.43 0.69 -24.93 16 2 C 0.06 1.76 5.33 -17.82 -0.10 1.67 16 3 Si 0.89 21.36 29.54 -169.99 -5.02 16.34 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 7 C -0.52 -14.27 8.43 -34.44 -0.29 -14.56 16 8 H 0.06 1.53 7.78 -52.49 -0.41 1.12 16 9 C 0.05 1.30 2.98 -89.91 -0.27 1.03 16 10 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.10 -2.41 5.51 -25.38 -0.14 -2.55 16 12 C 0.03 0.67 6.69 -2.76 -0.02 0.65 16 13 N -0.52 -10.02 5.37 -230.21 -1.24 -11.26 16 14 C 0.05 0.75 4.88 -3.82 -0.02 0.73 16 15 C -0.11 -1.55 4.86 -26.74 -0.13 -1.68 16 16 C -0.04 -0.44 5.75 -27.89 -0.16 -0.60 16 17 C 0.00 0.00 6.58 -35.62 -0.23 -0.23 16 18 C -0.22 -2.51 10.81 -39.70 -0.43 -2.94 16 19 C -0.21 -2.26 10.91 -39.70 -0.43 -2.70 16 20 C -0.05 -0.52 12.09 29.42 0.36 -0.16 16 21 O -0.18 -2.30 10.65 5.71 0.06 -2.24 16 22 C 0.04 0.89 4.76 -1.74 -0.01 0.88 16 23 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 24 H 0.05 1.35 7.84 -51.93 -0.41 0.94 16 25 H 0.06 1.53 8.04 -51.93 -0.42 1.11 16 26 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.03 0.50 7.65 -51.93 -0.40 0.10 16 28 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.03 0.45 7.95 -51.93 -0.41 0.04 16 30 H 0.07 1.05 7.19 -51.93 -0.37 0.67 16 31 H 0.08 1.07 8.14 -51.92 -0.42 0.65 16 32 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 33 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.15 1.19 8.06 -52.49 -0.42 0.76 16 36 H 0.20 1.31 8.06 -52.48 -0.42 0.89 16 37 H 0.03 0.72 7.93 -51.93 -0.41 0.31 16 38 H 0.06 1.30 7.80 -51.93 -0.40 0.90 16 LS Contribution 312.39 15.07 4.71 4.71 Total: -1.00 -29.96 312.39 -8.84 -38.80 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -6.17 Total: -0.96 kcal Atomic # 6 Polarization: -18.59 SS G_CDS: -1.87 Total: -20.46 kcal Atomic # 7 Polarization: -35.64 SS G_CDS: -0.55 Total: -36.19 kcal Atomic # 8 Polarization: -2.30 SS G_CDS: 0.06 Total: -2.24 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.96 -8.84 -38.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.017 kcal (2) G-P(sol) polarization free energy of solvation -29.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds