Wall clock time and date at job start Mon Mar 30 2020 07:37:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00089 * 2 1 4 4 H 1.48504 * 109.47171 * 180.02562 * 3 2 1 5 5 H 1.48496 * 109.47333 * 300.00052 * 3 2 1 6 6 H 1.48496 * 109.47187 * 60.00186 * 3 2 1 7 7 C 1.37878 * 120.00005 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99710 * 359.97438 * 7 2 1 10 10 H 1.08998 * 110.64440 * 298.29941 * 9 7 2 11 11 C 1.54589 * 110.72726 * 61.45628 * 9 7 2 12 12 C 1.53987 * 105.14285 * 140.49179 * 11 9 7 13 13 N 1.47900 * 107.22465 * 1.12525 * 12 11 9 14 14 C 1.46901 * 111.00212 * 214.25128 * 13 12 11 15 15 C 1.52999 * 109.47321 * 174.71813 * 14 13 12 16 16 C 1.52993 * 109.47187 * 174.72954 * 15 14 13 17 17 C 1.50703 * 109.47423 * 180.02562 * 16 15 14 18 18 C 1.34520 * 125.78630 * 90.00186 * 17 16 15 19 19 C 1.41380 * 106.84028 * 180.02562 * 18 17 16 20 20 C 1.34515 * 106.83907 * 359.97438 * 19 18 17 21 21 O 1.34301 * 125.79208 * 269.69809 * 17 16 15 22 22 C 1.48808 * 105.68005 * 334.90615 * 13 12 11 23 23 H 0.97001 * 120.00073 * 359.97438 * 1 2 3 24 24 H 1.09006 * 110.30545 * 21.57224 * 11 9 7 25 25 H 1.08998 * 110.39417 * 259.45361 * 11 9 7 26 26 H 1.09006 * 109.92095 * 120.57602 * 12 11 9 27 27 H 1.09005 * 109.92108 * 241.67800 * 12 11 9 28 28 H 1.08996 * 109.47472 * 294.72308 * 14 13 12 29 29 H 1.09001 * 109.46486 * 54.72284 * 14 13 12 30 30 H 1.08996 * 109.47645 * 294.73390 * 15 14 13 31 31 H 1.09008 * 109.46889 * 54.73595 * 15 14 13 32 32 H 1.09000 * 109.47497 * 300.00336 * 16 15 14 33 33 H 1.09003 * 109.47151 * 60.00610 * 16 15 14 34 34 H 1.07999 * 126.57849 * 359.96631 * 18 17 16 35 35 H 1.08002 * 126.58301 * 180.02562 * 19 18 17 36 36 H 1.08006 * 125.78818 * 180.02562 * 20 19 18 37 37 H 1.09000 * 110.51946 * 280.53939 * 22 13 12 38 38 H 1.09004 * 110.84190 * 157.56063 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3964 -1.2124 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4991 -0.0005 10 1 0.6403 -2.5903 0.8978 11 6 0.3785 -2.6272 -1.2703 12 6 0.5025 -4.1017 -1.6965 13 7 1.3723 -4.7723 -0.7059 14 6 2.1905 -5.8130 -1.3427 15 6 3.1677 -6.3919 -0.3176 16 6 3.9278 -7.5634 -0.9426 17 6 4.8899 -8.1340 0.0672 18 6 4.6192 -9.1192 0.9424 19 6 5.7978 -9.3360 1.6924 20 6 6.7184 -8.4709 1.2304 21 8 6.1647 -7.7494 0.2423 22 6 2.2238 -3.6984 -0.1262 23 1 -0.4850 0.8400 0.0004 24 1 0.7562 -1.9731 -2.0563 25 1 -0.6597 -2.3849 -1.0439 26 1 -0.4817 -4.5702 -1.7038 27 1 0.9512 -4.1653 -2.6879 28 1 1.5431 -6.6065 -1.7160 29 1 2.7488 -5.3791 -2.1722 30 1 3.8751 -5.6204 -0.0139 31 1 2.6147 -6.7415 0.5544 32 1 3.2203 -8.3350 -1.2463 33 1 4.4807 -7.2139 -1.8146 34 1 3.6811 -9.6431 1.0517 35 1 5.9333 -10.0583 2.4839 36 1 7.7324 -8.3759 1.5900 37 1 3.0464 -3.4576 -0.7997 38 1 2.6031 -3.9904 0.8531 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260224904.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:37:39 Heat of formation + Delta-G solvation = -14.598459 kcal Electronic energy + Delta-G solvation = -17698.243180 eV Core-core repulsion = 14926.900134 eV Total energy + Delta-G solvation = -2771.343046 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.43332 -39.79866 -36.24928 -34.74006 -33.77018 -32.20049 -30.23007 -29.25540 -26.92523 -25.62684 -22.92565 -22.62981 -21.56890 -21.29571 -20.97372 -18.47929 -18.12949 -16.99141 -16.74470 -16.69189 -16.01250 -15.96708 -15.22602 -14.81372 -14.21246 -13.92829 -13.85476 -13.69487 -13.50842 -13.33477 -13.05319 -12.96658 -12.79298 -12.51611 -12.28449 -12.02425 -11.91420 -11.56567 -11.52934 -11.11991 -10.81838 -10.80108 -10.51667 -9.32296 -9.25247 -8.14552 -6.25299 0.84459 1.39539 1.41149 1.52829 1.74529 2.18042 2.41774 3.15342 3.22197 3.74438 4.02159 4.10286 4.17031 4.19664 4.29549 4.37552 4.44877 4.52860 4.57145 4.65628 4.71652 4.80954 4.89380 4.98019 5.02369 5.04001 5.19824 5.25143 5.27220 5.33787 5.35517 5.60738 5.67095 5.80508 5.86321 6.02156 6.26693 6.31363 6.40230 6.84843 7.42704 8.95096 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.004172 C = 0.003789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.912338 B = 6709.422981 C = 7387.251475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.014 3.986 3 Si 0.956 3.044 4 H -0.267 1.267 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.039 3.961 10 H 0.000 1.000 11 C -0.094 4.094 12 C 0.043 3.957 13 N -0.529 5.529 14 C 0.049 3.951 15 C -0.104 4.104 16 C -0.031 4.031 17 C -0.026 4.026 18 C -0.223 4.223 19 C -0.227 4.227 20 C -0.053 4.053 21 O -0.199 6.199 22 C 0.058 3.942 23 H 0.261 0.739 24 H 0.033 0.967 25 H 0.038 0.962 26 H 0.079 0.921 27 H 0.046 0.954 28 H 0.095 0.905 29 H 0.033 0.967 30 H 0.046 0.954 31 H 0.068 0.932 32 H 0.117 0.883 33 H 0.085 0.915 34 H 0.160 0.840 35 H 0.168 0.832 36 H 0.232 0.768 37 H 0.030 0.970 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.237 -17.718 -1.538 20.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.191 1.191 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.574 4.574 8 H 0.071 0.929 9 C 0.020 3.980 10 H 0.018 0.982 11 C -0.132 4.132 12 C -0.085 4.085 13 N -0.253 5.253 14 C -0.078 4.078 15 C -0.142 4.142 16 C -0.068 4.068 17 C -0.075 4.075 18 C -0.242 4.242 19 C -0.246 4.246 20 C -0.120 4.120 21 O -0.096 6.096 22 C -0.070 4.070 23 H 0.070 0.930 24 H 0.052 0.948 25 H 0.056 0.944 26 H 0.097 0.903 27 H 0.064 0.936 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.135 0.865 33 H 0.103 0.897 34 H 0.178 0.822 35 H 0.185 0.815 36 H 0.249 0.751 37 H 0.048 0.952 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.914 -17.657 -1.320 19.824 hybrid contribution 0.620 1.427 -0.240 1.574 sum 9.534 -16.230 -1.560 18.888 Atomic orbital electron populations 1.70110 1.07267 1.27255 1.50987 1.25762 0.95683 1.02461 0.94627 0.85536 0.79050 0.79570 0.77693 1.19140 1.20474 1.20524 1.21462 0.92914 0.91823 1.51165 0.92895 1.19511 0.92905 0.92128 0.93418 0.98157 1.22088 0.99404 0.93391 0.98359 1.22855 0.97833 0.94206 0.93560 1.64813 1.19304 1.11124 1.30080 1.22333 0.95113 0.95065 0.95333 1.21486 0.97092 0.96767 0.98883 1.20125 0.94197 0.98115 0.94395 1.22821 0.83635 0.98841 1.02227 1.21931 1.01257 1.01662 0.99390 1.22198 0.93694 1.04086 1.04646 1.24749 1.01253 0.94737 0.91262 1.84020 1.24722 1.53866 1.47012 1.23103 0.94796 0.91061 0.98003 0.92988 0.94813 0.94350 0.90290 0.93583 0.88717 0.94898 0.93551 0.91291 0.86473 0.89690 0.82222 0.81493 0.75139 0.95211 0.91878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.14 12.44 21.45 0.27 -53.87 16 2 C 0.01 0.78 5.33 84.66 0.45 1.23 16 3 Si 0.96 44.16 29.54 68.60 2.03 46.19 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 6 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 7 C -0.54 -30.27 8.43 25.60 0.22 -30.06 16 8 H 0.05 2.94 7.78 -2.91 -0.02 2.92 16 9 C 0.04 2.07 2.98 -10.34 -0.03 2.04 16 10 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 11 C -0.09 -4.54 5.51 31.47 0.17 -4.37 16 12 C 0.04 1.64 6.69 86.44 0.58 2.22 16 13 N -0.53 -19.59 5.37 -882.25 -4.73 -24.33 16 14 C 0.05 1.38 4.88 86.30 0.42 1.80 16 15 C -0.10 -2.70 4.86 30.59 0.15 -2.55 16 16 C -0.03 -0.62 5.75 29.85 0.17 -0.45 16 17 C -0.03 -0.60 6.58 24.84 0.16 -0.44 16 18 C -0.22 -4.80 10.81 22.19 0.24 -4.56 16 19 C -0.23 -4.38 10.91 22.19 0.24 -4.14 16 20 C -0.05 -1.03 12.09 66.97 0.81 -0.22 16 21 O -0.20 -5.01 10.65 -2.47 -0.03 -5.04 16 22 C 0.06 2.50 4.76 86.60 0.41 2.91 16 23 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 24 H 0.03 1.72 7.84 -2.38 -0.02 1.70 16 25 H 0.04 1.98 8.04 -2.39 -0.02 1.96 16 26 H 0.08 2.74 8.14 -2.38 -0.02 2.72 16 27 H 0.05 1.58 7.65 -2.38 -0.02 1.56 16 28 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 29 H 0.03 0.92 7.95 -2.39 -0.02 0.90 16 30 H 0.05 1.39 7.19 -2.39 -0.02 1.37 16 31 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 32 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.16 2.84 8.06 -2.91 -0.02 2.82 16 35 H 0.17 2.32 8.06 -2.91 -0.02 2.30 16 36 H 0.23 2.48 8.06 -2.91 -0.02 2.46 16 37 H 0.03 1.29 7.93 -2.39 -0.02 1.27 16 38 H 0.06 2.68 7.80 -2.39 -0.02 2.66 16 Total: -1.00 -65.39 312.39 2.54 -62.86 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.01 Total: 10.76 kcal Atomic # 6 Polarization: -40.57 SS G_CDS: 4.00 Total: -36.57 kcal Atomic # 7 Polarization: -73.73 SS G_CDS: -4.47 Total: -78.19 kcal Atomic # 8 Polarization: -5.01 SS G_CDS: -0.03 Total: -5.04 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Total: -65.39 2.54 -62.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260224904.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.257 kcal (2) G-P(sol) polarization free energy of solvation -65.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.856 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds