Wall clock time and date at job start Mon Mar 30 2020 07:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47638 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47224 * 120.00015 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00049 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.54240 * 300.10515 * 9 7 2 11 11 C 1.53129 * 109.50308 * 60.16172 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.55494 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53001 * 109.47153 * 66.04611 * 15 14 13 17 17 C 1.50696 * 109.47089 * 179.97438 * 16 15 14 18 18 C 1.34513 * 125.78669 * 89.71621 * 17 16 15 19 19 C 1.41394 * 106.83927 * 179.89198 * 18 17 16 20 20 C 1.34509 * 106.83784 * 0.37386 * 19 18 17 21 21 O 1.34302 * 108.42398 * 359.77073 * 20 19 18 22 22 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 23 23 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.49266 * 57.67185 * 11 9 7 25 25 H 1.08995 * 109.55725 * 297.47932 * 11 9 7 26 26 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 27 27 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 28 28 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 29 29 H 1.09009 * 109.45500 * 299.14277 * 13 12 11 30 30 H 1.08996 * 109.46709 * 186.04933 * 15 14 13 31 31 H 1.09002 * 109.46552 * 306.04948 * 15 14 13 32 32 H 1.08995 * 109.47022 * 300.00315 * 16 15 14 33 33 H 1.09001 * 109.46710 * 59.99819 * 16 15 14 34 34 H 1.07994 * 126.58635 * 0.02585 * 18 17 16 35 35 H 1.08000 * 126.58044 * 180.12394 * 19 18 17 36 36 H 1.08005 * 125.78975 * 179.79746 * 20 19 18 37 37 H 1.09001 * 109.46071 * 181.75754 * 22 14 13 38 38 H 1.09002 * 109.46350 * 301.73871 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5575 0.8883 11 6 0.3730 -2.5825 -1.2523 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0586 -1.2390 14 7 1.5111 -4.9348 -0.0224 15 6 2.4283 -6.0740 0.1159 16 6 3.4581 -6.0400 -1.0151 17 6 4.3993 -7.2082 -0.8728 18 6 4.2271 -8.4275 -1.4141 19 6 5.3428 -9.2071 -1.0309 20 6 6.1258 -8.4199 -0.2716 21 8 5.5494 -7.2104 -0.1792 22 6 2.2448 -3.6629 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 0.9964 -2.4845 -2.1410 25 1 -0.3655 -1.7810 -1.2340 26 1 -0.9350 -4.0193 -2.1862 27 1 -0.9955 -4.0177 -0.4069 28 1 0.1914 -6.0236 -1.2406 29 1 1.3422 -4.9852 -2.1153 30 1 2.9408 -6.0132 1.0760 31 1 1.8625 -7.0042 0.0643 32 1 2.9455 -6.1007 -1.9751 33 1 4.0238 -5.1096 -0.9635 34 1 3.3972 -8.7488 -2.0259 35 1 5.5284 -10.2380 -1.2938 36 1 7.0599 -8.7110 0.1859 37 1 2.8614 -3.6143 0.8964 38 1 2.8816 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:32 Heat of formation + Delta-G solvation = 4.691663 kcal Electronic energy + Delta-G solvation = -18223.374511 eV Core-core repulsion = 15452.867948 eV Total energy + Delta-G solvation = -2770.506563 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.55064 -38.53953 -34.57959 -33.03557 -32.42431 -30.73964 -29.86019 -27.23565 -24.94210 -24.22044 -21.79145 -21.57249 -21.10476 -20.35529 -18.43344 -17.27531 -16.43944 -15.96356 -15.12011 -14.67077 -14.58748 -14.26680 -13.96514 -13.12187 -13.00179 -12.83814 -12.65422 -12.53071 -12.21367 -12.03972 -11.81223 -11.39451 -11.03821 -10.88278 -10.65754 -10.44718 -10.05382 -9.94746 -9.81315 -9.46153 -9.03737 -8.70772 -8.59074 -8.28127 -7.58654 -5.95723 -4.01901 1.73946 2.59806 3.01246 3.33628 3.38308 3.40856 4.38736 4.53345 4.79348 4.97926 5.00079 5.19970 5.32778 5.34373 5.56633 5.66514 5.76965 5.79220 5.82268 5.96929 6.07332 6.10267 6.23961 6.29159 6.41683 6.50054 6.52740 6.71746 6.76507 6.97757 7.15442 7.22623 7.40333 7.64825 7.75954 7.81207 8.09858 8.18919 8.49537 9.01972 9.62354 11.10293 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.004886 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.675072 B = 5728.957192 C = 6424.723213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.277 1.277 7 C -0.515 4.515 8 H 0.053 0.947 9 C 0.054 3.946 10 H 0.034 0.966 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.533 5.533 15 C 0.062 3.938 16 C -0.085 4.085 17 C 0.009 3.991 18 C -0.222 4.222 19 C -0.213 4.213 20 C -0.052 4.052 21 O -0.175 6.175 22 C 0.062 3.938 23 H 0.260 0.740 24 H 0.029 0.971 25 H 0.091 0.909 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.058 0.942 29 H 0.026 0.974 30 H 0.074 0.926 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.199 0.801 37 H 0.060 0.940 38 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.415 -15.161 -2.698 16.682 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.035 3.965 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.156 4.156 13 C -0.069 4.069 14 N -0.255 5.255 15 C -0.067 4.067 16 C -0.124 4.124 17 C -0.042 4.042 18 C -0.241 4.241 19 C -0.233 4.233 20 C -0.119 4.119 21 O -0.071 6.071 22 C -0.064 4.064 23 H 0.070 0.930 24 H 0.048 0.952 25 H 0.109 0.891 26 H 0.065 0.935 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.093 0.907 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.106 0.894 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.216 0.784 37 H 0.078 0.922 38 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 6.025 -14.768 -2.126 16.091 hybrid contribution 1.134 0.567 -0.883 1.545 sum 7.159 -14.201 -3.009 16.185 Atomic orbital electron populations 1.69880 1.05837 1.26417 1.50592 1.24924 0.94816 0.98913 0.95121 0.86698 0.79624 0.83325 0.78557 1.20393 1.21323 1.20306 1.21111 0.92783 0.90696 1.50829 0.92909 1.18670 0.92634 0.90303 0.94872 0.94774 1.21657 1.00037 0.94716 0.98468 1.21687 0.97216 0.96471 1.00239 1.22082 0.95617 0.98836 0.90386 1.62275 1.23201 1.02434 1.37632 1.22238 0.92282 0.95195 0.96948 1.21044 0.94904 0.94091 1.02338 1.22555 0.87118 0.97848 0.96640 1.21562 1.01633 0.93646 1.07245 1.21799 0.96516 1.01298 1.03652 1.23974 1.00504 0.83121 1.04345 1.84052 1.31199 1.33618 1.58248 1.22383 0.96595 0.88483 0.98975 0.93014 0.95174 0.89116 0.93518 0.92069 0.92343 0.95604 0.90713 0.91041 0.88918 0.89371 0.83706 0.83732 0.78390 0.92182 0.95800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.33 11.36 55.43 0.63 -24.70 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.52 -14.10 8.56 -34.44 -0.29 -14.39 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.02 16 9 C 0.05 1.35 2.26 -91.69 -0.21 1.14 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.60 5.03 -26.60 -0.13 -2.73 16 12 C -0.12 -2.28 6.09 -26.65 -0.16 -2.44 16 13 C 0.06 1.00 5.05 -3.84 -0.02 0.98 16 14 N -0.53 -9.66 4.86 -234.66 -1.14 -10.80 16 15 C 0.06 0.93 5.34 -3.82 -0.02 0.91 16 16 C -0.08 -1.19 5.05 -27.88 -0.14 -1.33 16 17 C 0.01 0.13 6.57 -35.63 -0.23 -0.10 16 18 C -0.22 -2.73 10.81 -39.70 -0.43 -3.16 16 19 C -0.21 -2.34 10.91 -39.70 -0.43 -2.77 16 20 C -0.05 -0.57 12.09 29.41 0.36 -0.21 16 21 O -0.18 -2.45 10.65 5.71 0.06 -2.39 16 22 C 0.06 1.31 4.06 -3.83 -0.02 1.29 16 23 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 24 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 25 H 0.09 2.39 6.16 -51.93 -0.32 2.07 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.06 0.87 8.06 -51.93 -0.42 0.45 16 29 H 0.03 0.43 6.76 -51.92 -0.35 0.08 16 30 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 31 H 0.07 0.97 8.06 -51.93 -0.42 0.55 16 32 H 0.09 1.23 6.68 -51.93 -0.35 0.89 16 33 H 0.09 1.35 6.51 -51.93 -0.34 1.01 16 34 H 0.15 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.14 1.21 8.06 -52.49 -0.42 0.79 16 36 H 0.20 1.36 8.06 -52.48 -0.42 0.94 16 37 H 0.06 1.26 8.12 -51.93 -0.42 0.84 16 38 H 0.02 0.50 6.61 -51.93 -0.34 0.15 16 LS Contribution 302.75 15.07 4.56 4.56 Total: -1.00 -29.02 302.75 -8.62 -37.63 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.88 Total: 0.60 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: -1.83 Total: -21.16 kcal Atomic # 7 Polarization: -34.99 SS G_CDS: -0.51 Total: -35.50 kcal Atomic # 8 Polarization: -2.45 SS G_CDS: 0.06 Total: -2.39 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -29.02 -8.62 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.326 kcal (2) G-P(sol) polarization free energy of solvation -29.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.619 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds