Wall clock time and date at job start Mon Mar 30 2020 07:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86797 * 120.00167 * 2 1 4 4 H 1.48499 * 109.47638 * 240.00181 * 3 2 1 5 5 H 1.48505 * 109.47005 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47224 * 120.00015 * 3 2 1 7 7 C 1.37880 * 119.99980 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99975 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00049 * 359.97438 * 7 2 1 10 10 H 1.09000 * 109.54240 * 300.10515 * 9 7 2 11 11 C 1.53129 * 109.50308 * 60.16172 * 9 7 2 12 12 C 1.53123 * 109.15931 * 177.55494 * 11 9 7 13 13 C 1.53039 * 109.31189 * 302.40768 * 12 11 9 14 14 N 1.46842 * 109.52266 * 59.15550 * 13 12 11 15 15 C 1.46910 * 110.99703 * 174.16402 * 14 13 12 16 16 C 1.53001 * 109.47153 * 66.04611 * 15 14 13 17 17 C 1.50696 * 109.47089 * 179.97438 * 16 15 14 18 18 C 1.34513 * 125.78669 * 89.71621 * 17 16 15 19 19 C 1.41394 * 106.83927 * 179.89198 * 18 17 16 20 20 C 1.34509 * 106.83784 * 0.37386 * 19 18 17 21 21 O 1.34302 * 108.42398 * 359.77073 * 20 19 18 22 22 C 1.46849 * 111.20050 * 298.25785 * 14 13 12 23 23 H 0.97003 * 120.00089 * 359.97438 * 1 2 3 24 24 H 1.09000 * 109.49266 * 57.67185 * 11 9 7 25 25 H 1.08995 * 109.55725 * 297.47932 * 11 9 7 26 26 H 1.09002 * 109.50371 * 182.44317 * 12 11 9 27 27 H 1.09003 * 109.50070 * 62.36477 * 12 11 9 28 28 H 1.08995 * 109.46501 * 179.17754 * 13 12 11 29 29 H 1.09009 * 109.45500 * 299.14277 * 13 12 11 30 30 H 1.08996 * 109.46709 * 186.04933 * 15 14 13 31 31 H 1.09002 * 109.46552 * 306.04948 * 15 14 13 32 32 H 1.08995 * 109.47022 * 300.00315 * 16 15 14 33 33 H 1.09001 * 109.46710 * 59.99819 * 16 15 14 34 34 H 1.07994 * 126.58635 * 0.02585 * 18 17 16 35 35 H 1.08000 * 126.58044 * 180.12394 * 19 18 17 36 36 H 1.08005 * 125.78975 * 179.79746 * 20 19 18 37 37 H 1.09001 * 109.46071 * 181.75754 * 22 14 13 38 38 H 1.09002 * 109.46350 * 301.73871 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2841 2.7464 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 1 0.6229 -2.5575 0.8883 11 6 0.3730 -2.5825 -1.2523 12 6 -0.3419 -3.9364 -1.2754 13 6 0.6981 -5.0586 -1.2390 14 7 1.5111 -4.9348 -0.0224 15 6 2.4283 -6.0740 0.1159 16 6 3.4581 -6.0400 -1.0151 17 6 4.3993 -7.2082 -0.8728 18 6 4.2271 -8.4275 -1.4141 19 6 5.3428 -9.2071 -1.0309 20 6 6.1258 -8.4199 -0.2716 21 8 5.5494 -7.2104 -0.1792 22 6 2.2448 -3.6629 -0.0012 23 1 -0.4850 0.8401 0.0004 24 1 0.9964 -2.4845 -2.1410 25 1 -0.3655 -1.7810 -1.2340 26 1 -0.9350 -4.0193 -2.1862 27 1 -0.9955 -4.0177 -0.4069 28 1 0.1914 -6.0236 -1.2406 29 1 1.3422 -4.9852 -2.1153 30 1 2.9408 -6.0132 1.0760 31 1 1.8625 -7.0042 0.0643 32 1 2.9455 -6.1007 -1.9751 33 1 4.0238 -5.1096 -0.9635 34 1 3.3972 -8.7488 -2.0259 35 1 5.5284 -10.2380 -1.2938 36 1 7.0599 -8.7110 0.1859 37 1 2.8614 -3.6143 0.8964 38 1 2.8816 -3.5961 -0.8833 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227194.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:31 Heat of formation + Delta-G solvation = -12.379618 kcal Electronic energy + Delta-G solvation = -18224.114778 eV Core-core repulsion = 15452.867948 eV Total energy + Delta-G solvation = -2771.246830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -43.46241 -40.06134 -36.20388 -34.38358 -33.75372 -32.04506 -31.67139 -28.35901 -26.92567 -25.56817 -23.26163 -22.69478 -22.55547 -21.40121 -20.03312 -18.47384 -18.15977 -17.08304 -16.74296 -16.12586 -15.93404 -15.68915 -15.30206 -14.79993 -14.49654 -14.13141 -13.81733 -13.69804 -13.53832 -13.42075 -13.20574 -12.86033 -12.76196 -12.68117 -12.51257 -11.97189 -11.72521 -11.54042 -11.36980 -10.86190 -10.82390 -10.65264 -10.36383 -9.60336 -8.92143 -8.06988 -6.21100 0.83095 1.41977 1.43129 1.50750 1.74001 2.14549 2.43562 3.13049 3.19968 3.81021 3.97198 4.12731 4.17266 4.24299 4.28698 4.34814 4.41295 4.55136 4.63315 4.67841 4.84352 4.90778 4.96051 5.02115 5.04919 5.09826 5.14763 5.20993 5.27785 5.42632 5.54247 5.64771 5.66145 5.97667 6.14182 6.22159 6.25928 6.35462 6.46875 6.91548 7.46699 8.97478 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.030977 B = 0.004886 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.675072 B = 5728.957192 C = 6424.723213 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.953 3.047 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.050 0.950 9 C 0.051 3.949 10 H -0.005 1.005 11 C -0.104 4.104 12 C -0.112 4.112 13 C 0.062 3.938 14 N -0.545 5.545 15 C 0.068 3.932 16 C -0.074 4.074 17 C -0.021 4.021 18 C -0.218 4.218 19 C -0.223 4.223 20 C -0.051 4.051 21 O -0.200 6.200 22 C 0.079 3.921 23 H 0.260 0.740 24 H 0.024 0.976 25 H 0.056 0.944 26 H 0.071 0.929 27 H 0.049 0.951 28 H 0.092 0.908 29 H 0.035 0.965 30 H 0.067 0.933 31 H 0.093 0.907 32 H 0.102 0.898 33 H 0.067 0.933 34 H 0.161 0.839 35 H 0.171 0.829 36 H 0.234 0.766 37 H 0.051 0.949 38 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.391 -17.067 -3.476 18.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.778 3.222 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.198 1.198 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.032 3.968 10 H 0.013 0.987 11 C -0.142 4.142 12 C -0.150 4.150 13 C -0.066 4.066 14 N -0.268 5.268 15 C -0.060 4.060 16 C -0.113 4.113 17 C -0.071 4.071 18 C -0.237 4.237 19 C -0.242 4.242 20 C -0.118 4.118 21 O -0.097 6.097 22 C -0.049 4.049 23 H 0.069 0.931 24 H 0.043 0.957 25 H 0.075 0.925 26 H 0.090 0.910 27 H 0.068 0.932 28 H 0.110 0.890 29 H 0.053 0.947 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.120 0.880 33 H 0.086 0.914 34 H 0.178 0.822 35 H 0.189 0.811 36 H 0.251 0.749 37 H 0.069 0.931 38 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 7.004 -16.694 -2.907 18.336 hybrid contribution 0.855 1.090 -0.616 1.515 sum 7.859 -15.604 -3.522 17.823 Atomic orbital electron populations 1.70028 1.07146 1.27110 1.51144 1.25699 0.95644 1.02244 0.94775 0.85701 0.78453 0.79247 0.78779 1.19658 1.20872 1.19782 1.21499 0.92939 0.92266 1.50926 0.93168 1.18607 0.93043 0.91337 0.93835 0.98718 1.21458 0.99064 0.96394 0.97288 1.21606 0.97632 0.94824 1.00961 1.22104 0.95029 0.99253 0.90168 1.62179 1.23913 1.02031 1.38671 1.22216 0.92240 0.94441 0.97085 1.20832 0.94637 0.93632 1.02165 1.22490 0.87792 0.98291 0.98559 1.21888 1.02291 0.93184 1.06366 1.22182 0.95965 1.02518 1.03526 1.24796 1.01339 0.81967 1.03692 1.84032 1.31631 1.35278 1.58792 1.22004 0.95414 0.88869 0.98578 0.93067 0.95748 0.92512 0.91034 0.93250 0.88987 0.94661 0.91489 0.88875 0.88014 0.91418 0.82181 0.81137 0.74937 0.93091 0.95710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.70 11.36 21.45 0.24 -53.46 16 2 C 0.02 0.86 5.30 84.66 0.45 1.31 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 6 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 7 C -0.54 -30.27 8.56 25.60 0.22 -30.05 16 8 H 0.05 2.77 7.74 -2.91 -0.02 2.75 16 9 C 0.05 2.61 2.26 -11.49 -0.03 2.58 16 10 H -0.01 -0.32 8.14 -2.39 -0.02 -0.33 16 11 C -0.10 -4.98 5.03 30.68 0.15 -4.83 16 12 C -0.11 -4.24 6.09 30.65 0.19 -4.06 16 13 C 0.06 1.97 5.05 86.33 0.44 2.41 16 14 N -0.55 -19.30 4.86 -896.33 -4.35 -23.65 16 15 C 0.07 1.94 5.34 86.30 0.46 2.40 16 16 C -0.07 -1.98 5.05 29.85 0.15 -1.83 16 17 C -0.02 -0.54 6.57 24.83 0.16 -0.38 16 18 C -0.22 -4.81 10.81 22.19 0.24 -4.57 16 19 C -0.22 -4.21 10.91 22.19 0.24 -3.97 16 20 C -0.05 -0.99 12.09 66.97 0.81 -0.18 16 21 O -0.20 -5.35 10.65 -2.49 -0.03 -5.38 16 22 C 0.08 3.35 4.06 86.32 0.35 3.70 16 23 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 24 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.06 3.10 6.16 -2.39 -0.01 3.08 16 26 H 0.07 2.33 8.14 -2.39 -0.02 2.31 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.09 2.38 8.06 -2.39 -0.02 2.36 16 29 H 0.04 1.08 6.76 -2.38 -0.02 1.06 16 30 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 31 H 0.09 2.27 8.06 -2.39 -0.02 2.25 16 32 H 0.10 2.50 6.68 -2.39 -0.02 2.48 16 33 H 0.07 2.07 6.51 -2.39 -0.02 2.06 16 34 H 0.16 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 36 H 0.23 2.43 8.06 -2.91 -0.02 2.40 16 37 H 0.05 2.21 8.12 -2.39 -0.02 2.19 16 38 H 0.02 1.04 6.61 -2.39 -0.02 1.03 16 Total: -1.00 -64.23 302.75 2.75 -61.48 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: 1.02 Total: 12.25 kcal Atomic # 6 Polarization: -41.29 SS G_CDS: 3.84 Total: -37.45 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -4.11 Total: -77.11 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.03 Total: -5.38 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.23 2.75 -61.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227194.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.097 kcal (2) G-P(sol) polarization free energy of solvation -64.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds