Wall clock time and date at job start Mon Mar 30 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46547 * 299.99597 * 3 2 1 6 6 H 1.48497 * 109.46922 * 59.99771 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53000 * 109.47415 * 66.05041 * 15 14 13 17 17 C 1.50700 * 109.47548 * 180.02562 * 16 15 14 18 18 C 1.34519 * 125.79012 * 89.99399 * 17 16 15 19 19 C 1.41382 * 106.83865 * 180.02562 * 18 17 16 20 20 C 1.34511 * 106.84233 * 0.02562 * 19 18 17 21 21 O 1.34302 * 125.78709 * 269.68788 * 17 16 15 22 22 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 23 23 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 25 25 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 26 26 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 27 27 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 28 28 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 29 29 H 1.09004 * 109.45969 * 180.80356 * 13 12 11 30 30 H 1.09001 * 109.47233 * 186.04625 * 15 14 13 31 31 H 1.09000 * 109.47464 * 306.04297 * 15 14 13 32 32 H 1.09001 * 109.46580 * 299.99983 * 16 15 14 33 33 H 1.09000 * 109.47412 * 59.99223 * 16 15 14 34 34 H 1.07998 * 126.57717 * 359.96871 * 18 17 16 35 35 H 1.07996 * 126.57491 * 179.97438 * 19 18 17 36 36 H 1.08001 * 125.79162 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46555 * 58.27446 * 22 14 13 38 38 H 1.08998 * 109.46337 * 178.25654 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 1.6210 -7.3551 -0.3340 17 6 2.5621 -8.5243 -0.4704 18 6 3.0069 -9.2977 0.5363 19 6 3.8620 -10.2661 -0.0382 20 6 3.8890 -10.0261 -1.3615 21 8 3.0944 -8.9742 -1.6184 22 6 2.2438 -3.6639 0.0054 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3679 -1.7788 1.2287 25 1 0.9907 -2.4808 2.1406 26 1 -0.9407 -4.0148 2.1844 27 1 -0.9975 -4.0170 0.4049 28 1 1.3366 -4.9809 2.1208 29 1 0.1876 -6.0214 1.2462 30 1 3.0927 -5.9087 -0.9526 31 1 3.0175 -6.1753 0.8057 32 1 0.9558 -7.5216 0.5133 33 1 1.0309 -7.2550 -1.2449 34 1 2.7591 -9.1976 1.5827 35 1 4.3923 -11.0478 0.4851 36 1 4.4503 -10.5874 -2.0938 37 1 2.8788 -3.5950 0.8887 38 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260227201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:35 Heat of formation + Delta-G solvation = 3.816288 kcal Electronic energy + Delta-G solvation = -18006.848095 eV Core-core repulsion = 15236.303572 eV Total energy + Delta-G solvation = -2770.544522 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -42.57574 -38.33054 -34.61808 -33.06916 -32.44151 -30.94507 -29.82148 -27.44438 -24.96343 -23.79514 -21.80542 -21.72413 -21.07741 -20.12861 -18.60497 -17.34623 -16.43266 -15.97803 -15.23832 -14.77627 -14.69941 -14.19083 -13.64456 -13.19205 -12.97188 -12.86940 -12.72421 -12.57705 -12.35287 -11.97663 -11.68073 -11.43235 -10.95327 -10.86420 -10.63006 -10.57213 -10.06267 -9.96651 -9.82768 -9.46228 -9.05987 -8.68283 -8.45579 -8.28637 -7.68438 -5.95999 -4.02080 1.70141 2.56815 2.97751 3.31043 3.39099 3.42895 4.34675 4.50421 4.83734 4.97209 4.97495 5.20825 5.31724 5.34370 5.62572 5.67599 5.74621 5.77613 5.85300 6.02761 6.07505 6.08215 6.14854 6.31714 6.42167 6.48355 6.52477 6.72213 6.76724 6.97936 7.12541 7.23205 7.40877 7.65559 7.76483 7.81942 8.10168 8.19176 8.49817 9.02167 9.62247 11.09994 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.004191 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.346021 B = 6680.013754 C = 7083.317696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.284 1.284 6 H -0.285 1.285 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.054 3.946 10 H 0.035 0.965 11 C -0.111 4.111 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.538 5.538 15 C 0.060 3.940 16 C -0.040 4.040 17 C 0.004 3.996 18 C -0.219 4.219 19 C -0.214 4.214 20 C -0.051 4.051 21 O -0.175 6.175 22 C 0.068 3.932 23 H 0.259 0.741 24 H 0.091 0.909 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.059 0.941 30 H 0.073 0.927 31 H 0.030 0.970 32 H 0.093 0.907 33 H 0.090 0.910 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.200 0.800 37 H 0.019 0.981 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.892 -17.065 0.814 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.053 0.947 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.263 5.263 15 C -0.068 4.068 16 C -0.077 4.077 17 C -0.047 4.047 18 C -0.238 4.238 19 C -0.233 4.233 20 C -0.118 4.118 21 O -0.071 6.071 22 C -0.059 4.059 23 H 0.069 0.931 24 H 0.109 0.891 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.042 0.958 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.049 0.951 32 H 0.111 0.889 33 H 0.109 0.891 34 H 0.163 0.837 35 H 0.163 0.837 36 H 0.216 0.784 37 H 0.037 0.963 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 3.373 -16.803 0.131 17.139 hybrid contribution 1.223 0.657 0.956 1.686 sum 4.596 -16.146 1.088 16.823 Atomic orbital electron populations 1.69895 1.05832 1.26193 1.50792 1.24931 0.94825 0.98945 0.95147 0.86575 0.80139 0.83972 0.77530 1.19869 1.21040 1.21105 1.21190 0.92871 0.90671 1.50549 0.92801 1.18679 0.92631 0.90252 0.94911 0.94715 1.21655 1.00052 0.94755 0.98446 1.21678 0.97170 0.96473 1.00223 1.22105 0.95766 0.98789 0.90234 1.61984 1.24071 1.02197 1.38022 1.22013 0.94288 0.89898 1.00627 1.20222 0.94778 0.88361 1.04380 1.22606 1.00079 0.98860 0.83129 1.21594 1.03441 0.98622 1.00137 1.21811 1.04210 1.02886 0.94433 1.23983 0.98638 0.91541 0.97643 1.84048 1.49283 1.39464 1.34269 1.22316 0.96444 0.88262 0.98833 0.93126 0.89080 0.95197 0.93531 0.92038 0.95842 0.92235 0.90828 0.95138 0.88864 0.89132 0.83673 0.83708 0.78353 0.96251 0.92224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 11.35 55.43 0.63 -24.73 16 2 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -14.15 8.57 -34.44 -0.30 -14.44 16 8 H 0.05 1.47 7.75 -52.48 -0.41 1.06 16 9 C 0.05 1.36 2.27 -91.68 -0.21 1.15 16 10 H 0.03 0.97 8.14 -51.93 -0.42 0.54 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.76 16 12 C -0.12 -2.27 6.10 -26.65 -0.16 -2.44 16 13 C 0.06 1.01 5.29 -3.84 -0.02 0.99 16 14 N -0.54 -9.87 4.66 -234.67 -1.09 -10.96 16 15 C 0.06 0.92 4.94 -3.83 -0.02 0.90 16 16 C -0.04 -0.52 5.68 -27.88 -0.16 -0.68 16 17 C 0.00 0.05 6.58 -35.62 -0.23 -0.18 16 18 C -0.22 -2.62 10.81 -39.70 -0.43 -3.05 16 19 C -0.21 -2.27 10.91 -39.70 -0.43 -2.71 16 20 C -0.05 -0.52 12.09 29.41 0.36 -0.17 16 21 O -0.17 -2.31 10.65 5.70 0.06 -2.25 16 22 C 0.07 1.46 4.68 -3.83 -0.02 1.44 16 23 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 24 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 25 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 28 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.87 6.22 -51.93 -0.32 0.54 16 30 H 0.07 1.15 7.98 -51.93 -0.41 0.74 16 31 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 32 H 0.09 1.10 6.44 -51.93 -0.33 0.77 16 33 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.15 1.52 8.06 -52.49 -0.42 1.10 16 35 H 0.15 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.20 1.26 8.06 -52.49 -0.42 0.84 16 37 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 1.27 8.01 -51.93 -0.42 0.85 16 LS Contribution 305.90 15.07 4.61 4.61 Total: -1.00 -29.24 305.90 -8.66 -37.91 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: -6.00 Total: -0.57 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.85 Total: -20.29 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: -0.46 Total: -35.69 kcal Atomic # 8 Polarization: -2.31 SS G_CDS: 0.06 Total: -2.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -29.24 -8.66 -37.91 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.723 kcal (2) G-P(sol) polarization free energy of solvation -29.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds