Wall clock time and date at job start Mon Mar 30 2020 07:40:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31505 * 1 3 3 Si 1.86808 * 120.00140 * 2 1 4 4 H 1.48499 * 109.47043 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46547 * 299.99597 * 3 2 1 6 6 H 1.48497 * 109.46922 * 59.99771 * 3 2 1 7 7 C 1.37877 * 120.00221 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00594 * 180.02562 * 7 2 1 9 9 C 1.50705 * 119.99919 * 0.02562 * 7 2 1 10 10 H 1.09000 * 109.53248 * 60.09647 * 9 7 2 11 11 C 1.53120 * 109.50009 * 299.99707 * 9 7 2 12 12 C 1.53123 * 109.21163 * 182.43636 * 11 9 7 13 13 C 1.53039 * 109.27546 * 57.62218 * 12 11 9 14 14 N 1.46842 * 109.52666 * 300.81951 * 13 12 11 15 15 C 1.46892 * 111.00192 * 185.84212 * 14 13 12 16 16 C 1.53000 * 109.47415 * 66.05041 * 15 14 13 17 17 C 1.50700 * 109.47548 * 180.02562 * 16 15 14 18 18 C 1.34519 * 125.79012 * 89.99399 * 17 16 15 19 19 C 1.41382 * 106.83865 * 180.02562 * 18 17 16 20 20 C 1.34511 * 106.84233 * 0.02562 * 19 18 17 21 21 O 1.34302 * 125.78709 * 269.68788 * 17 16 15 22 22 C 1.46848 * 111.19688 * 61.74516 * 14 13 12 23 23 H 0.96996 * 120.00390 * 0.02562 * 1 2 3 24 24 H 1.09002 * 109.52427 * 62.49909 * 11 9 7 25 25 H 1.08995 * 109.52208 * 302.37228 * 11 9 7 26 26 H 1.08999 * 109.50194 * 177.56161 * 12 11 9 27 27 H 1.09002 * 109.50248 * 297.64565 * 12 11 9 28 28 H 1.08997 * 109.46051 * 60.83848 * 13 12 11 29 29 H 1.09004 * 109.45969 * 180.80356 * 13 12 11 30 30 H 1.09001 * 109.47233 * 186.04625 * 15 14 13 31 31 H 1.09000 * 109.47464 * 306.04297 * 15 14 13 32 32 H 1.09001 * 109.46580 * 299.99983 * 16 15 14 33 33 H 1.09000 * 109.47412 * 59.99223 * 16 15 14 34 34 H 1.07998 * 126.57717 * 359.96871 * 18 17 16 35 35 H 1.07996 * 126.57491 * 179.97438 * 19 18 17 36 36 H 1.08001 * 125.79162 * 179.97438 * 20 19 18 37 37 H 1.08999 * 109.46555 * 58.27446 * 22 14 13 38 38 H 1.08998 * 109.46337 * 178.25654 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 1 0.6256 -2.5589 -0.8902 11 6 0.3700 -2.5808 1.2502 12 6 -0.3457 -3.9342 1.2747 13 6 0.6944 -5.0564 1.2433 14 7 1.5101 -4.9357 0.0283 15 6 2.4274 -6.0752 -0.1053 16 6 1.6210 -7.3551 -0.3340 17 6 2.5621 -8.5243 -0.4704 18 6 3.0069 -9.2977 0.5363 19 6 3.8620 -10.2661 -0.0382 20 6 3.8890 -10.0261 -1.3615 21 8 3.0944 -8.9742 -1.6184 22 6 2.2438 -3.6639 0.0054 23 1 -0.4850 0.8400 -0.0004 24 1 -0.3679 -1.7788 1.2287 25 1 0.9907 -2.4808 2.1406 26 1 -0.9407 -4.0148 2.1844 27 1 -0.9975 -4.0170 0.4049 28 1 1.3366 -4.9809 2.1208 29 1 0.1876 -6.0214 1.2462 30 1 3.0927 -5.9087 -0.9526 31 1 3.0175 -6.1753 0.8057 32 1 0.9558 -7.5216 0.5133 33 1 1.0309 -7.2550 -1.2449 34 1 2.7591 -9.1976 1.5827 35 1 4.3923 -11.0478 0.4851 36 1 4.4503 -10.5874 -2.0938 37 1 2.8788 -3.5950 0.8887 38 1 2.8622 -3.6174 -0.8910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260227201.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:40:35 Heat of formation + Delta-G solvation = -13.132304 kcal Electronic energy + Delta-G solvation = -18007.583041 eV Core-core repulsion = 15236.303572 eV Total energy + Delta-G solvation = -2771.279469 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.44102 -39.89319 -36.19816 -34.40852 -33.73289 -32.31563 -31.60763 -28.54622 -26.91845 -25.18700 -23.39803 -22.67472 -22.45926 -21.12410 -20.35472 -18.45280 -18.18716 -17.07857 -16.68110 -16.36741 -16.05841 -15.56694 -15.02775 -14.81159 -14.56031 -14.13813 -14.02817 -13.69677 -13.47035 -13.38975 -13.14318 -12.86765 -12.78106 -12.56432 -12.46659 -11.96588 -11.74370 -11.68168 -11.37810 -10.89026 -10.78376 -10.64989 -10.37300 -9.34583 -9.15646 -8.07658 -6.21873 0.83285 1.40434 1.42117 1.53462 1.73903 2.14940 2.43265 3.08830 3.19222 3.86737 4.00169 4.12772 4.19442 4.23247 4.28798 4.36900 4.47538 4.56456 4.64753 4.69220 4.82612 4.91895 4.94704 4.98690 5.03687 5.10547 5.12536 5.19735 5.30774 5.42183 5.53478 5.64480 5.66714 5.96670 6.12440 6.21143 6.26425 6.33739 6.45946 6.90740 7.45999 8.97064 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.042010 B = 0.004191 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.346021 B = 6680.013754 C = 7083.317696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.105 4.105 12 C -0.111 4.111 13 C 0.062 3.938 14 N -0.547 5.547 15 C 0.065 3.935 16 C -0.028 4.028 17 C -0.023 4.023 18 C -0.220 4.220 19 C -0.227 4.227 20 C -0.049 4.049 21 O -0.197 6.197 22 C 0.081 3.919 23 H 0.260 0.740 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.071 0.929 27 H 0.052 0.948 28 H 0.027 0.973 29 H 0.096 0.904 30 H 0.065 0.935 31 H 0.036 0.964 32 H 0.108 0.892 33 H 0.084 0.916 34 H 0.158 0.842 35 H 0.169 0.831 36 H 0.235 0.765 37 H 0.015 0.985 38 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.718 -18.776 1.441 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.554 5.554 2 C -0.184 4.184 3 Si 0.780 3.220 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.576 4.576 8 H 0.068 0.932 9 C 0.033 3.967 10 H 0.016 0.984 11 C -0.143 4.143 12 C -0.149 4.149 13 C -0.066 4.066 14 N -0.272 5.272 15 C -0.063 4.063 16 C -0.066 4.066 17 C -0.073 4.073 18 C -0.239 4.239 19 C -0.246 4.246 20 C -0.115 4.115 21 O -0.093 6.093 22 C -0.046 4.046 23 H 0.070 0.930 24 H 0.076 0.924 25 H 0.041 0.959 26 H 0.090 0.910 27 H 0.071 0.929 28 H 0.045 0.955 29 H 0.114 0.886 30 H 0.083 0.917 31 H 0.054 0.946 32 H 0.126 0.874 33 H 0.103 0.897 34 H 0.176 0.824 35 H 0.186 0.814 36 H 0.251 0.749 37 H 0.034 0.966 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 4.202 -18.532 0.762 19.018 hybrid contribution 0.988 1.129 0.737 1.672 sum 5.190 -17.403 1.498 18.222 Atomic orbital electron populations 1.70033 1.07133 1.27011 1.51222 1.25711 0.95677 1.02294 0.94766 0.85565 0.79031 0.79764 0.77638 1.19271 1.20603 1.20514 1.21554 0.92956 0.92252 1.50806 0.93184 1.18605 0.93008 0.91177 0.93946 0.98425 1.21466 0.99098 0.96517 0.97214 1.21597 0.97551 0.94686 1.01088 1.22138 0.95165 0.99498 0.89761 1.61907 1.24550 1.01746 1.38948 1.22001 0.94069 0.89691 1.00492 1.20058 0.94552 0.87252 1.04715 1.22584 1.01443 0.99712 0.83595 1.21912 1.02985 0.98427 1.00604 1.22183 1.04307 1.03338 0.94729 1.24792 0.97517 0.90489 0.98732 1.84033 1.50033 1.40543 1.34739 1.21978 0.95385 0.88879 0.98368 0.93047 0.92360 0.95947 0.91011 0.92945 0.95462 0.88573 0.91690 0.94604 0.87350 0.89724 0.82439 0.81351 0.74870 0.96641 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.58 11.35 21.45 0.24 -53.33 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 44.19 29.54 68.60 2.03 46.22 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 5 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 6 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 7 C -0.54 -30.33 8.57 25.60 0.22 -30.11 16 8 H 0.05 2.78 7.75 -2.91 -0.02 2.76 16 9 C 0.05 2.67 2.27 -11.48 -0.03 2.64 16 10 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 11 C -0.10 -5.05 5.02 30.68 0.15 -4.90 16 12 C -0.11 -4.22 6.10 30.65 0.19 -4.03 16 13 C 0.06 2.00 5.29 86.33 0.46 2.46 16 14 N -0.55 -19.62 4.66 -896.37 -4.17 -23.79 16 15 C 0.07 1.92 4.94 86.30 0.43 2.34 16 16 C -0.03 -0.69 5.68 29.85 0.17 -0.52 16 17 C -0.02 -0.56 6.58 24.83 0.16 -0.40 16 18 C -0.22 -4.76 10.81 22.19 0.24 -4.52 16 19 C -0.23 -4.20 10.91 22.19 0.24 -3.95 16 20 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 21 O -0.20 -4.90 10.65 -2.53 -0.03 -4.93 16 22 C 0.08 3.53 4.68 86.33 0.40 3.94 16 23 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 24 H 0.06 3.18 6.15 -2.39 -0.01 3.17 16 25 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.10 2.46 6.22 -2.38 -0.01 2.45 16 30 H 0.06 2.00 7.98 -2.39 -0.02 1.98 16 31 H 0.04 1.02 8.12 -2.39 -0.02 1.00 16 32 H 0.11 2.25 6.44 -2.39 -0.02 2.23 16 33 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 34 H 0.16 2.88 8.06 -2.91 -0.02 2.85 16 35 H 0.17 2.19 8.06 -2.91 -0.02 2.16 16 36 H 0.24 2.19 8.06 -2.91 -0.02 2.17 16 37 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 38 H 0.05 2.35 8.01 -2.39 -0.02 2.34 16 Total: -1.00 -64.31 305.90 2.98 -61.33 By element: Atomic # 1 Polarization: 9.36 SS G_CDS: 1.02 Total: 10.38 kcal Atomic # 6 Polarization: -39.77 SS G_CDS: 3.90 Total: -35.87 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -3.93 Total: -77.12 kcal Atomic # 8 Polarization: -4.90 SS G_CDS: -0.03 Total: -4.93 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -64.31 2.98 -61.33 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260227201.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.197 kcal (2) G-P(sol) polarization free energy of solvation -64.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.132 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds