Wall clock time and date at job start Mon Mar 30 2020 07:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.48567 * 110.99849 * 2 1 4 4 C 1.54379 * 104.59336 * 159.04113 * 3 2 1 5 5 C 1.54259 * 105.05962 * 336.14582 * 4 3 2 6 6 H 1.08997 * 110.32268 * 241.10223 * 5 4 3 7 7 C 1.50704 * 110.32015 * 118.90219 * 5 4 3 8 8 H 1.07998 * 119.99797 * 309.44205 * 7 5 4 9 9 C 1.37873 * 120.00352 * 129.44682 * 7 5 4 10 10 N 1.31520 * 119.99611 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 120.00165 * 179.97438 * 9 7 5 12 12 H 1.48495 * 109.47068 * 359.97438 * 11 9 7 13 13 H 1.48498 * 109.47323 * 120.00199 * 11 9 7 14 14 H 1.48500 * 109.47068 * 239.99738 * 11 9 7 15 15 C 1.48558 * 111.00373 * 115.41710 * 2 1 3 16 16 H 1.09000 * 110.40668 * 319.86310 * 15 2 1 17 17 C 1.50701 * 110.41162 * 82.18092 * 15 2 1 18 18 C 1.38236 * 119.97761 * 213.62799 * 17 15 2 19 19 C 1.38194 * 120.02921 * 180.27844 * 18 17 15 20 20 C 1.38468 * 119.97072 * 359.51288 * 19 18 17 21 21 F 1.35105 * 120.02339 * 180.20967 * 20 19 18 22 22 C 1.38455 * 119.94879 * 0.49047 * 20 19 18 23 23 C 1.38201 * 119.97514 * 359.73905 * 22 20 19 24 24 H 1.08995 * 109.47560 * 304.57879 * 1 2 3 25 25 H 1.08997 * 109.47422 * 64.58449 * 1 2 3 26 26 H 1.09005 * 109.46547 * 184.58003 * 1 2 3 27 27 H 1.09000 * 110.41175 * 277.81981 * 3 2 1 28 28 H 1.08998 * 110.40822 * 40.26045 * 3 2 1 29 29 H 1.09000 * 110.32371 * 95.04855 * 4 3 2 30 30 H 1.09000 * 110.31819 * 217.14602 * 4 3 2 31 31 H 0.96995 * 119.99439 * 180.02562 * 10 9 7 32 32 H 1.08002 * 119.98885 * 0.02562 * 18 17 15 33 33 H 1.08005 * 120.01904 * 179.72680 * 19 18 17 34 34 H 1.08000 * 120.01411 * 179.72770 * 22 20 19 35 35 H 1.07997 * 119.98770 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0014 1.3870 0.0000 4 6 3.4432 1.2502 0.5344 5 6 3.4432 -0.0538 1.3585 6 1 3.6937 0.1556 2.3984 7 6 4.4181 -1.0428 0.7731 8 1 4.3868 -1.2721 -0.2818 9 6 5.3499 -1.6550 1.5843 10 7 5.3882 -1.3754 2.8689 11 14 6.5578 -2.8813 0.8589 12 1 6.3076 -3.0197 -0.5983 13 1 7.9450 -2.3998 1.0800 14 1 6.3806 -4.2000 1.5185 15 6 2.0014 -0.5953 1.2526 16 1 1.4086 -0.2729 2.1086 17 6 2.0105 -2.0992 1.1574 18 6 1.7804 -2.8641 2.2857 19 6 1.7941 -4.2434 2.2007 20 6 2.0284 -4.8591 0.9829 21 9 2.0379 -6.2075 0.8978 22 6 2.2588 -4.0920 -0.1465 23 6 2.2493 -2.7129 -0.0582 24 1 -0.3634 0.5832 0.8461 25 1 -0.3634 0.4410 -0.9282 26 1 -0.3632 -1.0245 0.0821 27 1 2.0078 1.7917 -1.0121 28 1 1.4098 2.0212 0.6602 29 1 4.1483 1.1750 -0.2935 30 1 3.6942 2.1006 1.1684 31 1 6.0440 -1.8058 3.4394 32 1 1.5938 -2.3836 3.2348 33 1 1.6186 -4.8408 3.0832 34 1 2.4461 -4.5712 -1.0961 35 1 2.4286 -2.1143 -0.9391 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260252601.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:56 Heat of formation + Delta-G solvation = -15.530406 kcal Electronic energy + Delta-G solvation = -18767.095905 eV Core-core repulsion = 15872.252141 eV Total energy + Delta-G solvation = -2894.843763 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.24415 -39.14729 -37.13066 -33.12307 -30.85878 -30.72504 -30.31325 -26.90553 -25.46461 -23.90180 -22.26953 -21.64682 -19.91507 -19.15087 -17.08037 -16.44150 -15.58182 -15.24434 -14.95598 -14.85927 -14.32135 -13.91949 -13.55365 -12.95864 -12.85331 -12.70459 -12.44036 -12.05101 -11.86227 -11.70029 -11.32686 -10.92313 -10.79084 -10.63992 -10.43220 -10.31052 -10.20649 -10.03600 -9.16048 -8.88345 -8.48295 -8.24446 -7.87926 -7.56933 -6.02940 -4.00342 2.01110 2.10371 3.31702 3.41632 3.44614 4.42531 4.45935 4.68300 5.00331 5.25322 5.49052 5.54755 5.57829 5.65628 5.72253 5.84692 5.90847 6.12560 6.16118 6.17551 6.22085 6.32075 6.47910 6.71307 6.78096 6.83710 6.88827 6.92517 7.08615 7.26014 7.36109 7.50143 7.74109 7.76290 7.84815 7.94009 8.44513 9.06156 9.61196 11.06754 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.015677 B = 0.012627 C = 0.008199 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1785.636667 B = 2216.884900 C = 3414.413950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.506 5.506 3 C 0.035 3.965 4 C -0.120 4.120 5 C 0.040 3.960 6 H 0.073 0.927 7 C -0.489 4.489 8 H 0.059 0.941 9 C 0.071 3.929 10 N -0.893 5.893 11 Si 0.877 3.123 12 H -0.270 1.270 13 H -0.285 1.285 14 H -0.284 1.284 15 C 0.098 3.902 16 H 0.035 0.965 17 C -0.009 4.009 18 C -0.091 4.091 19 C -0.160 4.160 20 C 0.069 3.931 21 F -0.156 7.156 22 C -0.171 4.171 23 C -0.039 4.039 24 H 0.019 0.981 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.067 0.933 28 H 0.029 0.971 29 H 0.066 0.934 30 H 0.045 0.955 31 H 0.260 0.740 32 H 0.119 0.881 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.169 0.543 -2.998 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.230 5.230 3 C -0.093 4.093 4 C -0.159 4.159 5 C 0.021 3.979 6 H 0.091 0.909 7 C -0.527 4.527 8 H 0.078 0.922 9 C -0.131 4.131 10 N -0.531 5.531 11 Si 0.705 3.295 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.210 1.210 15 C -0.010 4.010 16 H 0.053 0.947 17 C -0.010 4.010 18 C -0.109 4.109 19 C -0.179 4.179 20 C 0.050 3.950 21 F -0.135 7.135 22 C -0.190 4.190 23 C -0.057 4.057 24 H 0.038 0.962 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.048 0.952 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.137 0.863 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.909 0.154 -3.317 8.578 hybrid contribution 0.516 -0.580 0.484 0.915 sum -7.393 -0.426 -2.833 7.929 Atomic orbital electron populations 1.22479 0.89819 1.01315 0.99822 1.65198 1.06235 1.15130 1.36405 1.23066 0.97146 0.89387 0.99678 1.22595 0.93852 0.99317 1.00111 1.19701 0.88883 0.91108 0.98202 0.90919 1.20980 1.14279 1.22666 0.94767 0.92239 1.24879 0.97149 0.96273 0.94768 1.69872 1.35937 1.43274 1.04047 0.86734 0.81192 0.81697 0.79831 1.19460 1.21169 1.20973 1.22044 0.99734 0.90556 0.88692 0.94686 1.19365 0.94419 0.94719 0.92501 1.20676 0.99675 0.92310 0.98285 1.20810 1.05711 0.95521 0.95889 1.17621 1.05904 0.76114 0.95393 1.91403 1.94671 1.30293 1.97172 1.21016 1.05837 0.94901 0.97201 1.20766 0.94246 0.92008 0.98703 0.96226 0.92184 0.91832 0.91503 0.95244 0.91523 0.93601 0.93057 0.86326 0.86206 0.86162 0.84739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.44 60.06 0.57 0.79 16 2 N -0.51 -9.07 4.41 -231.72 -1.02 -10.09 16 3 C 0.04 0.60 6.49 -2.18 -0.01 0.58 16 4 C -0.12 -2.38 6.64 -25.35 -0.17 -2.55 16 5 C 0.04 0.92 3.23 -90.39 -0.29 0.63 16 6 H 0.07 1.88 7.01 -51.93 -0.36 1.51 16 7 C -0.49 -12.40 5.64 -34.44 -0.19 -12.60 16 8 H 0.06 1.54 6.98 -52.49 -0.37 1.18 16 9 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 10 N -0.89 -24.87 12.65 55.43 0.70 -24.17 16 11 Si 0.88 21.45 29.54 -169.99 -5.02 16.43 16 12 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 13 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 14 H -0.28 -7.11 7.11 56.52 0.40 -6.71 16 15 C 0.10 1.97 2.41 -67.23 -0.16 1.81 16 16 H 0.04 0.69 7.90 -51.93 -0.41 0.28 16 17 C -0.01 -0.19 3.83 -104.62 -0.40 -0.59 16 18 C -0.09 -1.79 9.69 -39.60 -0.38 -2.18 16 19 C -0.16 -3.05 10.03 -39.51 -0.40 -3.45 16 20 C 0.07 1.34 7.30 -39.42 -0.29 1.06 16 21 F -0.16 -2.98 17.27 2.25 0.04 -2.94 16 22 C -0.17 -3.28 10.03 -39.51 -0.40 -3.68 16 23 C -0.04 -0.78 7.55 -39.59 -0.30 -1.08 16 24 H 0.02 0.28 7.97 -51.93 -0.41 -0.14 16 25 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 26 H 0.06 0.94 7.96 -51.93 -0.41 0.53 16 27 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 28 H 0.03 0.47 7.90 -51.93 -0.41 0.06 16 29 H 0.07 1.37 7.70 -51.93 -0.40 0.97 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 31 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 32 H 0.12 2.19 8.06 -52.49 -0.42 1.77 16 33 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 34 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.13 2.70 7.23 -52.49 -0.38 2.32 16 LS Contribution 290.49 15.07 4.38 4.38 Total: -1.00 -27.14 290.49 -8.28 -35.42 By element: Atomic # 1 Polarization: 5.25 SS G_CDS: -4.83 Total: 0.42 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -2.52 Total: -19.45 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: -0.32 Total: -34.26 kcal Atomic # 9 Polarization: -2.98 SS G_CDS: 0.04 Total: -2.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.14 -8.28 -35.42 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252601.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.893 kcal (2) G-P(sol) polarization free energy of solvation -27.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds