Wall clock time and date at job start Mon Mar 30 2020 07:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48555 * 110.99716 * 2 1 4 4 C 1.54379 * 104.59320 * 200.95830 * 3 2 1 5 5 C 1.54258 * 105.06310 * 23.85519 * 4 3 2 6 6 H 1.08997 * 110.32385 * 118.99562 * 5 4 3 7 7 C 1.50696 * 110.32464 * 241.10578 * 5 4 3 8 8 H 1.07999 * 119.99935 * 35.01028 * 7 5 4 9 9 C 1.37878 * 120.00139 * 215.01125 * 7 5 4 10 10 N 1.31517 * 119.99556 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 120.00399 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47483 * 179.97438 * 11 9 7 13 13 H 1.48506 * 109.46881 * 299.99696 * 11 9 7 14 14 H 1.48497 * 109.47224 * 59.99387 * 11 9 7 15 15 C 1.48555 * 110.99966 * 244.58196 * 2 1 3 16 16 H 1.09001 * 110.41540 * 40.25915 * 15 2 1 17 17 C 1.50700 * 110.41439 * 277.81709 * 15 2 1 18 18 C 1.38250 * 119.97210 * 328.51449 * 17 15 2 19 19 C 1.38201 * 120.02414 * 179.72439 * 18 17 15 20 20 C 1.38455 * 119.97356 * 0.56882 * 19 18 17 21 21 F 1.35093 * 120.02451 * 179.68491 * 20 19 18 22 22 C 1.38466 * 119.94876 * 359.70291 * 20 19 18 23 23 C 1.38199 * 119.97291 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47014 * 60.12387 * 1 2 3 25 25 H 1.09003 * 109.47154 * 180.12783 * 1 2 3 26 26 H 1.08999 * 109.47270 * 300.12408 * 1 2 3 27 27 H 1.09004 * 110.41447 * 82.18228 * 3 2 1 28 28 H 1.09004 * 110.41757 * 319.73835 * 3 2 1 29 29 H 1.08995 * 110.32526 * 264.95475 * 4 3 2 30 30 H 1.09005 * 110.40806 * 142.79615 * 4 3 2 31 31 H 0.96993 * 120.00057 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.98571 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00937 * 180.25319 * 19 18 17 34 34 H 1.08000 * 120.00987 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.98248 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 3.6955 0.1553 -2.3981 7 6 4.4180 -1.0429 -0.7731 8 1 4.5622 -1.0907 0.2961 9 6 5.1258 -1.8868 -1.6026 10 7 4.9497 -1.8288 -2.9047 11 14 6.3335 -3.1133 -0.8771 12 1 6.9602 -3.8974 -1.9714 13 1 7.3859 -2.3851 -0.1237 14 1 5.6141 -4.0326 0.0407 15 6 2.0014 -0.5953 -1.2526 16 1 1.4099 -0.2713 -2.1089 17 6 2.0104 -2.0992 -1.1575 18 6 2.2049 -2.7127 0.0661 19 6 2.2077 -4.0918 0.1555 20 6 2.0274 -4.8592 -0.9827 21 9 2.0363 -6.2074 -0.8975 22 6 1.8384 -4.2437 -2.2086 23 6 1.8304 -2.8644 -2.2946 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5157 0.8889 27 1 2.0078 1.7917 1.0121 28 1 1.4098 2.0213 -0.6602 29 1 4.1482 1.1749 0.2934 30 1 3.6954 2.0994 -1.1695 31 1 4.3224 -1.1922 -3.2814 32 1 2.3506 -2.1139 0.9530 33 1 2.3555 -4.5708 1.1122 34 1 1.6981 -4.8413 -3.0972 35 1 1.6825 -2.3841 -3.2506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260252628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:00 Heat of formation + Delta-G solvation = -15.105811 kcal Electronic energy + Delta-G solvation = -18941.242170 eV Core-core repulsion = 16046.416818 eV Total energy + Delta-G solvation = -2894.825351 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.19156 -39.21673 -37.14437 -33.42350 -30.90671 -30.54902 -30.24705 -26.77488 -25.33271 -23.76515 -22.20042 -21.68011 -20.08049 -19.41977 -17.08823 -16.53944 -15.68032 -15.22967 -15.03236 -14.87539 -13.91864 -13.72401 -13.59302 -13.18456 -12.97309 -12.71531 -12.41939 -12.37486 -12.00042 -11.61855 -11.03554 -10.96618 -10.69257 -10.66597 -10.40833 -10.21970 -10.11287 -10.07178 -9.51437 -8.45790 -8.34298 -8.19523 -7.93759 -7.52118 -6.30976 -3.98028 2.06156 2.16943 3.46144 3.51625 3.66076 4.44714 4.55768 4.63272 5.06160 5.30961 5.47170 5.55083 5.58810 5.62448 5.68245 5.77626 5.84252 6.06594 6.08722 6.15856 6.21491 6.31457 6.36927 6.61110 6.71508 6.75445 6.85281 6.95547 7.05623 7.16452 7.23081 7.37896 7.58600 7.76158 7.81173 8.25690 8.49028 8.91463 9.68319 11.07020 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.012397 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.428499 B = 2258.058126 C = 3273.232865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 N -0.503 5.503 3 C 0.035 3.965 4 C -0.116 4.116 5 C 0.034 3.966 6 H 0.044 0.956 7 C -0.569 4.569 8 H 0.051 0.949 9 C 0.033 3.967 10 N -0.905 5.905 11 Si 1.048 2.952 12 H -0.284 1.284 13 H -0.289 1.289 14 H -0.283 1.283 15 C 0.097 3.903 16 H 0.031 0.969 17 C -0.012 4.012 18 C -0.036 4.036 19 C -0.171 4.171 20 C 0.071 3.929 21 F -0.156 7.156 22 C -0.157 4.157 23 C -0.084 4.084 24 H 0.019 0.981 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.029 0.971 29 H 0.068 0.932 30 H 0.045 0.955 31 H 0.267 0.733 32 H 0.133 0.867 33 H 0.120 0.880 34 H 0.119 0.881 35 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.602 1.352 3.577 8.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.226 5.226 3 C -0.092 4.092 4 C -0.154 4.154 5 C 0.015 3.985 6 H 0.062 0.938 7 C -0.607 4.607 8 H 0.070 0.930 9 C -0.173 4.173 10 N -0.541 5.541 11 Si 0.877 3.123 12 H -0.210 1.210 13 H -0.216 1.216 14 H -0.210 1.210 15 C -0.011 4.011 16 H 0.049 0.951 17 C -0.013 4.013 18 C -0.055 4.055 19 C -0.190 4.190 20 C 0.052 3.948 21 F -0.135 7.135 22 C -0.176 4.176 23 C -0.103 4.103 24 H 0.037 0.963 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.048 0.952 29 H 0.086 0.914 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.150 0.850 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.360 -0.193 3.654 7.338 hybrid contribution -1.292 1.370 -0.350 1.915 sum -7.652 1.176 3.305 8.418 Atomic orbital electron populations 1.22486 0.89695 1.01608 0.99642 1.65178 1.06289 1.14839 1.36311 1.23043 0.96821 0.89617 0.99767 1.22475 0.94320 0.98604 1.00040 1.19680 0.90272 0.92193 0.96355 0.93795 1.21693 1.24159 1.20185 0.94647 0.93048 1.25537 0.98446 0.98358 0.94937 1.70841 1.35806 1.35909 1.11496 0.83813 0.76304 0.76550 0.75628 1.20958 1.21580 1.20953 1.22088 0.99390 0.91018 0.88619 0.95094 1.19267 0.95076 0.94308 0.92618 1.20684 0.94217 0.91978 0.98577 1.20983 1.06168 0.94862 0.97002 1.17597 1.05877 0.76094 0.95193 1.91396 1.94617 1.30296 1.97210 1.20761 1.05630 0.95451 0.95734 1.20574 0.99391 0.92411 0.97911 0.96254 0.91689 0.92141 0.91349 0.95243 0.91356 0.93634 0.92142 0.84955 0.86246 0.86249 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.22 9.41 60.07 0.57 0.79 16 2 N -0.50 -9.13 4.34 -231.72 -1.01 -10.14 16 3 C 0.04 0.60 6.49 -2.18 -0.01 0.59 16 4 C -0.12 -2.28 6.64 -25.35 -0.17 -2.45 16 5 C 0.03 0.78 2.93 -90.39 -0.26 0.52 16 6 H 0.04 1.09 6.23 -51.93 -0.32 0.77 16 7 C -0.57 -14.49 5.62 -34.44 -0.19 -14.69 16 8 H 0.05 1.36 7.77 -52.49 -0.41 0.95 16 9 C 0.03 0.87 5.13 -17.82 -0.09 0.78 16 10 N -0.90 -25.43 13.64 55.43 0.76 -24.67 16 11 Si 1.05 25.25 29.90 -169.99 -5.08 20.16 16 12 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 C 0.10 1.98 2.40 -67.22 -0.16 1.82 16 16 H 0.03 0.62 7.85 -51.93 -0.41 0.22 16 17 C -0.01 -0.25 3.59 -104.62 -0.38 -0.63 16 18 C -0.04 -0.75 7.93 -39.59 -0.31 -1.06 16 19 C -0.17 -3.41 10.03 -39.51 -0.40 -3.81 16 20 C 0.07 1.45 7.30 -39.42 -0.29 1.16 16 21 F -0.16 -3.07 17.27 2.25 0.04 -3.03 16 22 C -0.16 -3.13 10.03 -39.51 -0.40 -3.53 16 23 C -0.08 -1.73 9.70 -39.60 -0.38 -2.12 16 24 H 0.02 0.28 7.97 -51.93 -0.41 -0.14 16 25 H 0.06 0.98 8.05 -51.93 -0.42 0.56 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.03 0.46 7.97 -51.93 -0.41 0.05 16 29 H 0.07 1.40 7.67 -51.93 -0.40 1.00 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.27 7.41 6.45 -40.82 -0.26 7.14 16 32 H 0.13 2.73 7.49 -52.49 -0.39 2.34 16 33 H 0.12 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.12 2.13 8.06 -52.49 -0.42 1.70 16 35 H 0.11 2.24 8.06 -52.49 -0.42 1.82 16 LS Contribution 289.71 15.07 4.37 4.37 Total: -1.00 -27.39 289.71 -8.18 -35.57 By element: Atomic # 1 Polarization: 5.12 SS G_CDS: -4.77 Total: 0.35 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: -2.48 Total: -22.61 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: -0.25 Total: -34.81 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 25.25 SS G_CDS: -5.08 Total: 20.16 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.39 -8.18 -35.57 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.465 kcal (2) G-P(sol) polarization free energy of solvation -27.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds