Wall clock time and date at job start Mon Mar 30 2020 07:13:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.48555 * 110.99716 * 2 1 4 4 C 1.54379 * 104.59320 * 200.95830 * 3 2 1 5 5 C 1.54258 * 105.06310 * 23.85519 * 4 3 2 6 6 H 1.08997 * 110.32385 * 118.99562 * 5 4 3 7 7 C 1.50696 * 110.32464 * 241.10578 * 5 4 3 8 8 H 1.07999 * 119.99935 * 35.01028 * 7 5 4 9 9 C 1.37878 * 120.00139 * 215.01125 * 7 5 4 10 10 N 1.31517 * 119.99556 * 359.97438 * 9 7 5 11 11 Si 1.86794 * 120.00399 * 180.02562 * 9 7 5 12 12 H 1.48496 * 109.47483 * 179.97438 * 11 9 7 13 13 H 1.48506 * 109.46881 * 299.99696 * 11 9 7 14 14 H 1.48497 * 109.47224 * 59.99387 * 11 9 7 15 15 C 1.48555 * 110.99966 * 244.58196 * 2 1 3 16 16 H 1.09001 * 110.41540 * 40.25915 * 15 2 1 17 17 C 1.50700 * 110.41439 * 277.81709 * 15 2 1 18 18 C 1.38250 * 119.97210 * 328.51449 * 17 15 2 19 19 C 1.38201 * 120.02414 * 179.72439 * 18 17 15 20 20 C 1.38455 * 119.97356 * 0.56882 * 19 18 17 21 21 F 1.35093 * 120.02451 * 179.68491 * 20 19 18 22 22 C 1.38466 * 119.94876 * 359.70291 * 20 19 18 23 23 C 1.38199 * 119.97291 * 0.02562 * 22 20 19 24 24 H 1.09000 * 109.47014 * 60.12387 * 1 2 3 25 25 H 1.09003 * 109.47154 * 180.12783 * 1 2 3 26 26 H 1.08999 * 109.47270 * 300.12408 * 1 2 3 27 27 H 1.09004 * 110.41447 * 82.18228 * 3 2 1 28 28 H 1.09004 * 110.41757 * 319.73835 * 3 2 1 29 29 H 1.08995 * 110.32526 * 264.95475 * 4 3 2 30 30 H 1.09005 * 110.40806 * 142.79615 * 4 3 2 31 31 H 0.96993 * 120.00057 * 0.02562 * 10 9 7 32 32 H 1.07999 * 119.98571 * 359.97438 * 18 17 15 33 33 H 1.07999 * 120.00937 * 180.25319 * 19 18 17 34 34 H 1.08000 * 120.00987 * 179.97438 * 22 20 19 35 35 H 1.08002 * 119.98248 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0013 1.3869 0.0000 4 6 3.4432 1.2501 -0.5344 5 6 3.4433 -0.0539 -1.3585 6 1 3.6955 0.1553 -2.3981 7 6 4.4180 -1.0429 -0.7731 8 1 4.5622 -1.0907 0.2961 9 6 5.1258 -1.8868 -1.6026 10 7 4.9497 -1.8288 -2.9047 11 14 6.3335 -3.1133 -0.8771 12 1 6.9602 -3.8974 -1.9714 13 1 7.3859 -2.3851 -0.1237 14 1 5.6141 -4.0326 0.0407 15 6 2.0014 -0.5953 -1.2526 16 1 1.4099 -0.2713 -2.1089 17 6 2.0104 -2.0992 -1.1575 18 6 2.2049 -2.7127 0.0661 19 6 2.2077 -4.0918 0.1555 20 6 2.0274 -4.8592 -0.9827 21 9 2.0363 -6.2074 -0.8975 22 6 1.8384 -4.2437 -2.2086 23 6 1.8304 -2.8644 -2.2946 24 1 -0.3633 0.5119 -0.8911 25 1 -0.3633 -1.0277 0.0023 26 1 -0.3634 0.5157 0.8889 27 1 2.0078 1.7917 1.0121 28 1 1.4098 2.0213 -0.6602 29 1 4.1482 1.1749 0.2934 30 1 3.6954 2.0994 -1.1695 31 1 4.3224 -1.1922 -3.2814 32 1 2.3506 -2.1139 0.9530 33 1 2.3555 -4.5708 1.1122 34 1 1.6981 -4.8413 -3.0972 35 1 1.6825 -2.3841 -3.2506 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252628.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:13:59 Heat of formation + Delta-G solvation = -29.001828 kcal Electronic energy + Delta-G solvation = -18941.844746 eV Core-core repulsion = 16046.416818 eV Total energy + Delta-G solvation = -2895.427928 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.75873 -40.78448 -38.68027 -35.26433 -32.47367 -32.18262 -31.83268 -28.38628 -26.88966 -25.49396 -23.79738 -23.25942 -21.61409 -21.07795 -18.80331 -18.27202 -17.26330 -16.77511 -16.58308 -16.44448 -15.63838 -15.39508 -15.05931 -14.91109 -14.48294 -14.26677 -13.96599 -13.89791 -13.64044 -13.15703 -12.65361 -12.52660 -12.46551 -12.20466 -12.04469 -11.90159 -11.80958 -11.68542 -11.26690 -10.39678 -10.34797 -9.78284 -9.33108 -9.13559 -8.39047 -6.04075 0.46054 0.57637 1.52632 1.58639 1.73668 2.61343 2.87544 3.19062 3.36742 3.48108 3.98147 4.03324 4.09498 4.12128 4.30767 4.37025 4.45207 4.62222 4.68558 4.69245 4.74637 4.86258 4.96847 5.01013 5.14893 5.17597 5.26629 5.35788 5.43658 5.51180 5.61607 5.79695 6.06268 6.20684 6.27967 6.37163 6.42466 6.86964 7.65719 8.99973 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017372 B = 0.012397 C = 0.008552 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1611.428499 B = 2258.058126 C = 3273.232865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.513 5.513 3 C 0.043 3.957 4 C -0.115 4.115 5 C 0.025 3.975 6 H 0.017 0.983 7 C -0.557 4.557 8 H 0.040 0.960 9 C -0.004 4.004 10 N -0.932 5.932 11 Si 1.072 2.928 12 H -0.294 1.294 13 H -0.274 1.274 14 H -0.276 1.276 15 C 0.106 3.894 16 H 0.031 0.969 17 C -0.022 4.022 18 C -0.045 4.045 19 C -0.172 4.172 20 C 0.061 3.939 21 F -0.153 7.153 22 C -0.160 4.160 23 C -0.096 4.096 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.084 0.916 27 H 0.089 0.911 28 H 0.047 0.953 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.259 0.741 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.137 0.863 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.527 1.704 4.722 9.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 N -0.237 5.237 3 C -0.085 4.085 4 C -0.153 4.153 5 C 0.005 3.995 6 H 0.035 0.965 7 C -0.595 4.595 8 H 0.058 0.942 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.899 3.101 12 H -0.221 1.221 13 H -0.200 1.200 14 H -0.202 1.202 15 C -0.003 4.003 16 H 0.049 0.951 17 C -0.023 4.023 18 C -0.063 4.063 19 C -0.191 4.191 20 C 0.042 3.958 21 F -0.132 7.132 22 C -0.179 4.179 23 C -0.115 4.115 24 H 0.045 0.955 25 H 0.080 0.920 26 H 0.103 0.897 27 H 0.107 0.893 28 H 0.065 0.935 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.149 0.851 33 H 0.159 0.841 34 H 0.155 0.845 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -7.295 0.172 4.822 8.746 hybrid contribution -1.035 1.286 -0.687 1.788 sum -8.330 1.458 4.136 9.414 Atomic orbital electron populations 1.22527 0.87557 1.01964 1.01156 1.65155 1.08351 1.15453 1.34738 1.23042 0.94846 0.89405 1.01211 1.22383 0.96263 0.97277 0.99356 1.19676 0.91326 0.93394 0.95093 0.96527 1.21791 1.23945 1.19955 0.93820 0.94172 1.26245 0.99668 0.99619 0.94907 1.70910 1.36976 1.36912 1.12234 0.83492 0.75769 0.75697 0.75189 1.22060 1.19979 1.20206 1.21810 0.97720 0.90886 0.89899 0.95091 1.19429 0.95218 0.94743 0.92899 1.20715 0.94789 0.92371 0.98411 1.21239 1.05216 0.94694 0.97940 1.17730 1.06241 0.76372 0.95491 1.91401 1.94621 1.29959 1.97208 1.21008 1.04906 0.95477 0.96530 1.20720 0.99795 0.92882 0.98091 0.95485 0.92013 0.89735 0.89254 0.93523 0.92523 0.92594 0.92955 0.85063 0.84111 0.84472 0.86526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 9.41 127.69 1.20 1.65 16 2 N -0.51 -17.48 4.34 -887.02 -3.85 -21.33 16 3 C 0.04 1.33 6.49 86.45 0.56 1.89 16 4 C -0.11 -4.34 6.64 31.49 0.21 -4.13 16 5 C 0.02 1.11 2.93 -10.64 -0.03 1.08 16 6 H 0.02 0.84 6.23 -2.39 -0.01 0.82 16 7 C -0.56 -28.27 5.62 25.60 0.14 -28.13 16 8 H 0.04 2.10 7.77 -2.91 -0.02 2.08 16 9 C 0.00 -0.20 5.13 84.65 0.43 0.23 16 10 N -0.93 -53.03 13.64 21.45 0.29 -52.73 16 11 Si 1.07 50.50 29.90 68.60 2.05 52.55 16 12 H -0.29 -14.31 7.11 99.48 0.71 -13.60 16 13 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 14 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 15 C 0.11 4.21 2.40 44.32 0.11 4.31 16 16 H 0.03 1.23 7.85 -2.39 -0.02 1.21 16 17 C -0.02 -0.92 3.59 -19.86 -0.07 -0.99 16 18 C -0.04 -1.79 7.93 22.26 0.18 -1.61 16 19 C -0.17 -6.59 10.03 22.31 0.22 -6.37 16 20 C 0.06 2.38 7.30 22.38 0.16 2.55 16 21 F -0.15 -5.77 17.27 44.97 0.78 -4.99 16 22 C -0.16 -6.26 10.03 22.31 0.22 -6.04 16 23 C -0.10 -3.92 9.70 22.26 0.22 -3.71 16 24 H 0.03 0.70 7.97 -2.39 -0.02 0.68 16 25 H 0.06 1.72 8.05 -2.39 -0.02 1.70 16 26 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.09 2.44 8.14 -2.39 -0.02 2.43 16 28 H 0.05 1.31 7.97 -2.38 -0.02 1.29 16 29 H 0.06 2.25 7.67 -2.39 -0.02 2.23 16 30 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 31 H 0.26 14.73 6.45 -92.71 -0.60 14.13 16 32 H 0.13 5.25 7.49 -2.91 -0.02 5.23 16 33 H 0.14 4.67 8.06 -2.91 -0.02 4.64 16 34 H 0.14 4.73 8.06 -2.91 -0.02 4.70 16 35 H 0.12 4.60 8.06 -2.91 -0.02 4.57 16 Total: -1.00 -57.16 289.71 4.07 -53.09 By element: Atomic # 1 Polarization: 11.43 SS G_CDS: 1.24 Total: 12.67 kcal Atomic # 6 Polarization: -42.82 SS G_CDS: 3.56 Total: -39.26 kcal Atomic # 7 Polarization: -70.50 SS G_CDS: -3.56 Total: -74.06 kcal Atomic # 9 Polarization: -5.77 SS G_CDS: 0.78 Total: -4.99 kcal Atomic # 14 Polarization: 50.50 SS G_CDS: 2.05 Total: 52.55 kcal Total: -57.16 4.07 -53.09 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252628.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.089 kcal (2) G-P(sol) polarization free energy of solvation -57.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds