Wall clock time and date at job start Mon Mar 30 2020 07:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48534 * 111.00027 * 2 1 4 4 C 1.54937 * 103.22709 * 200.27918 * 3 2 1 5 5 C 1.55033 * 102.99667 * 37.34398 * 4 3 2 6 6 H 1.09004 * 110.45508 * 219.30970 * 5 4 3 7 7 C 1.50696 * 110.37336 * 97.00418 * 5 4 3 8 8 H 1.07999 * 120.00436 * 244.50698 * 7 5 4 9 9 C 1.37882 * 120.00122 * 64.50821 * 7 5 4 10 10 N 1.31513 * 119.99602 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00125 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47137 * 59.99648 * 11 9 7 13 13 H 1.48502 * 109.47158 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46886 * 299.99775 * 11 9 7 15 15 C 1.47905 * 111.00253 * 242.60235 * 2 1 3 16 16 H 1.09002 * 109.91668 * 26.49076 * 15 2 1 17 17 C 1.50702 * 109.91657 * 265.39427 * 15 2 1 18 18 C 1.38243 * 119.97354 * 321.52894 * 17 15 2 19 19 C 1.38202 * 120.02335 * 179.76983 * 18 17 15 20 20 C 1.38464 * 119.97238 * 0.50139 * 19 18 17 21 21 F 1.35105 * 120.02356 * 179.77040 * 20 19 18 22 22 C 1.38459 * 119.94740 * 359.74904 * 20 19 18 23 23 C 1.38201 * 119.97731 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.46892 * 177.39452 * 1 2 3 25 25 H 1.09004 * 109.47239 * 297.39787 * 1 2 3 26 26 H 1.09000 * 109.47187 * 57.39915 * 1 2 3 27 27 H 1.08998 * 110.66444 * 318.70929 * 3 2 1 28 28 H 1.08999 * 110.66639 * 81.67834 * 3 2 1 29 29 H 1.08998 * 110.72856 * 155.76989 * 4 3 2 30 30 H 1.09005 * 110.72434 * 278.87441 * 4 3 2 31 31 H 0.97004 * 119.99602 * 180.02562 * 10 9 7 32 32 H 1.07994 * 119.99037 * 0.02562 * 18 17 15 33 33 H 1.07993 * 120.01631 * 180.25743 * 19 18 17 34 34 H 1.08000 * 120.01087 * 180.02562 * 22 20 19 35 35 H 1.07994 * 119.98725 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 6 3.3001 0.1010 -1.5952 6 1 4.1470 -0.5840 -1.5548 7 6 3.1843 0.7108 -2.9684 8 1 2.2736 0.5925 -3.5368 9 6 4.2410 1.4197 -3.4993 10 7 5.3498 1.5642 -2.8070 11 14 4.0972 2.1761 -5.2012 12 1 2.9709 3.1437 -5.2193 13 1 5.3602 2.8810 -5.5380 14 1 3.8462 1.1055 -6.1991 15 6 1.9991 -0.6354 -1.2259 16 1 1.2759 -0.5403 -2.0359 17 6 2.2893 -2.0911 -0.9653 18 6 2.8235 -2.4823 0.2482 19 6 3.0856 -3.8175 0.4900 20 6 2.8226 -4.7622 -0.4875 21 9 3.0828 -6.0673 -0.2539 22 6 2.2923 -4.3685 -1.7044 23 6 2.0257 -3.0334 -1.9419 24 1 -0.3633 -1.0266 -0.0467 25 1 -0.3634 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8657 27 1 1.4237 2.0204 -0.6730 28 1 2.0013 1.7987 1.0091 29 1 3.8123 2.1351 -0.9716 30 1 4.1122 0.8866 0.2795 31 1 6.0931 2.0632 -3.1803 32 1 3.0323 -1.7449 1.0090 33 1 3.4991 -4.1236 1.4396 34 1 2.0864 -5.1045 -2.4675 35 1 1.6125 -2.7260 -2.8911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260252653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:04 Heat of formation + Delta-G solvation = -20.635489 kcal Electronic energy + Delta-G solvation = -18224.874553 eV Core-core repulsion = 15329.809417 eV Total energy + Delta-G solvation = -2895.065136 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.56081 -39.28484 -37.34232 -33.19895 -31.11977 -30.68795 -30.42930 -27.29008 -25.41209 -23.74202 -22.65860 -21.76358 -20.06524 -19.20641 -17.28621 -16.53593 -15.80034 -15.57008 -15.25342 -14.83098 -14.19839 -14.17589 -13.58132 -13.19181 -13.06635 -12.79833 -12.64583 -12.36050 -11.92749 -11.76834 -11.05565 -10.96754 -10.73113 -10.67688 -10.54940 -10.49627 -10.26870 -9.95756 -9.60489 -8.91896 -8.67177 -8.42863 -7.96041 -7.84303 -6.08370 -4.13791 1.60223 1.68460 3.26381 3.32062 3.33793 4.04724 4.35666 4.64048 4.67421 5.17055 5.21685 5.22847 5.47159 5.63503 5.75549 5.80642 5.83528 5.92610 6.15586 6.18037 6.21457 6.34659 6.37593 6.47235 6.53292 6.65746 6.71459 7.00434 7.07750 7.12979 7.34720 7.53627 7.57772 7.72812 7.80032 7.87793 8.35156 8.87826 9.50611 10.99699 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.007225 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.603485 B = 3874.362287 C = 4539.970837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.521 5.521 3 C 0.038 3.962 4 C -0.101 4.101 5 C 0.057 3.943 6 H 0.039 0.961 7 C -0.518 4.518 8 H 0.054 0.946 9 C 0.065 3.935 10 N -0.884 5.884 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.287 1.287 14 H -0.277 1.277 15 C 0.102 3.898 16 H 0.057 0.943 17 C -0.052 4.052 18 C -0.064 4.064 19 C -0.160 4.160 20 C 0.075 3.925 21 F -0.151 7.151 22 C -0.157 4.157 23 C -0.090 4.090 24 H 0.059 0.941 25 H 0.059 0.941 26 H 0.024 0.976 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.262 0.738 32 H 0.137 0.863 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.542 -5.906 4.932 10.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.140 4.140 5 C 0.038 3.962 6 H 0.057 0.943 7 C -0.556 4.556 8 H 0.072 0.928 9 C -0.137 4.137 10 N -0.522 5.522 11 Si 0.717 3.283 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.202 1.202 15 C -0.006 4.006 16 H 0.075 0.925 17 C -0.053 4.053 18 C -0.082 4.082 19 C -0.179 4.179 20 C 0.056 3.944 21 F -0.130 7.130 22 C -0.176 4.176 23 C -0.109 4.109 24 H 0.077 0.923 25 H 0.078 0.922 26 H 0.043 0.957 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.072 0.928 32 H 0.155 0.845 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -6.196 -6.146 5.401 10.263 hybrid contribution -0.274 0.614 -1.679 1.808 sum -6.470 -5.532 3.722 9.291 Atomic orbital electron populations 1.22433 0.89458 1.00998 1.00074 1.64552 1.06673 1.15877 1.37383 1.23213 0.97991 0.88644 0.99073 1.22510 0.92068 1.02169 0.97240 1.19556 0.90241 0.92379 0.93986 0.94324 1.21136 1.00140 1.33905 1.00402 0.92821 1.24942 0.95251 0.96179 0.97328 1.69958 1.04113 1.40829 1.37301 0.86711 0.77354 0.79471 0.84807 1.20313 1.21210 1.20232 1.21674 0.99640 0.89377 0.89882 0.92519 1.20079 0.96335 0.95651 0.93259 1.20908 0.95733 0.94201 0.97341 1.21109 1.04264 0.93366 0.99192 1.17677 1.03223 0.77742 0.95781 1.91438 1.92319 1.34166 1.95069 1.20980 1.03254 0.97243 0.96153 1.20917 0.99229 0.91427 0.99310 0.92257 0.92172 0.95734 0.94192 0.91940 0.90174 0.94146 0.92823 0.84484 0.85509 0.85514 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.40 60.06 0.56 0.86 16 2 N -0.52 -9.43 4.39 -232.16 -1.02 -10.45 16 3 C 0.04 0.72 6.56 -1.90 -0.01 0.71 16 4 C -0.10 -2.26 6.18 -24.63 -0.15 -2.41 16 5 C 0.06 1.36 2.51 -90.18 -0.23 1.13 16 6 H 0.04 1.02 7.68 -51.93 -0.40 0.63 16 7 C -0.52 -13.50 8.49 -34.44 -0.29 -13.79 16 8 H 0.05 1.38 7.34 -52.49 -0.39 1.00 16 9 C 0.07 1.74 5.10 -17.82 -0.09 1.65 16 10 N -0.88 -24.54 12.18 55.43 0.67 -23.86 16 11 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 14 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 15 C 0.10 2.04 2.31 -67.79 -0.16 1.88 16 16 H 0.06 1.17 6.87 -51.93 -0.36 0.81 16 17 C -0.05 -0.96 4.75 -104.62 -0.50 -1.46 16 18 C -0.06 -1.09 9.33 -39.59 -0.37 -1.46 16 19 C -0.16 -2.52 10.03 -39.51 -0.40 -2.92 16 20 C 0.07 1.20 7.30 -39.42 -0.29 0.91 16 21 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 22 C -0.16 -2.45 10.03 -39.51 -0.40 -2.85 16 23 C -0.09 -1.52 9.67 -39.59 -0.38 -1.91 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.02 0.38 8.00 -51.93 -0.42 -0.04 16 27 H 0.04 0.77 7.96 -51.93 -0.41 0.36 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 1.99 6.81 -51.93 -0.35 1.64 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 32 H 0.14 2.33 7.68 -52.49 -0.40 1.93 16 33 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 34 H 0.13 1.68 8.06 -52.49 -0.42 1.25 16 35 H 0.13 2.03 8.05 -52.49 -0.42 1.61 16 LS Contribution 293.74 15.07 4.43 4.43 Total: -1.00 -27.01 293.74 -8.42 -35.43 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -4.82 Total: 0.83 kcal Atomic # 6 Polarization: -16.95 SS G_CDS: -2.70 Total: -19.64 kcal Atomic # 7 Polarization: -33.97 SS G_CDS: -0.34 Total: -34.31 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.01 -8.42 -35.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.796 kcal (2) G-P(sol) polarization free energy of solvation -27.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds