Wall clock time and date at job start Mon Mar 30 2020 07:14:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.48534 * 111.00027 * 2 1 4 4 C 1.54937 * 103.22709 * 200.27918 * 3 2 1 5 5 C 1.55033 * 102.99667 * 37.34398 * 4 3 2 6 6 H 1.09004 * 110.45508 * 219.30970 * 5 4 3 7 7 C 1.50696 * 110.37336 * 97.00418 * 5 4 3 8 8 H 1.07999 * 120.00436 * 244.50698 * 7 5 4 9 9 C 1.37882 * 120.00122 * 64.50821 * 7 5 4 10 10 N 1.31513 * 119.99602 * 359.97438 * 9 7 5 11 11 Si 1.86800 * 120.00125 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47137 * 59.99648 * 11 9 7 13 13 H 1.48502 * 109.47158 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.46886 * 299.99775 * 11 9 7 15 15 C 1.47905 * 111.00253 * 242.60235 * 2 1 3 16 16 H 1.09002 * 109.91668 * 26.49076 * 15 2 1 17 17 C 1.50702 * 109.91657 * 265.39427 * 15 2 1 18 18 C 1.38243 * 119.97354 * 321.52894 * 17 15 2 19 19 C 1.38202 * 120.02335 * 179.76983 * 18 17 15 20 20 C 1.38464 * 119.97238 * 0.50139 * 19 18 17 21 21 F 1.35105 * 120.02356 * 179.77040 * 20 19 18 22 22 C 1.38459 * 119.94740 * 359.74904 * 20 19 18 23 23 C 1.38201 * 119.97731 * 359.97438 * 22 20 19 24 24 H 1.09003 * 109.46892 * 177.39452 * 1 2 3 25 25 H 1.09004 * 109.47239 * 297.39787 * 1 2 3 26 26 H 1.09000 * 109.47187 * 57.39915 * 1 2 3 27 27 H 1.08998 * 110.66444 * 318.70929 * 3 2 1 28 28 H 1.08999 * 110.66639 * 81.67834 * 3 2 1 29 29 H 1.08998 * 110.72856 * 155.76989 * 4 3 2 30 30 H 1.09005 * 110.72434 * 278.87441 * 4 3 2 31 31 H 0.97004 * 119.99602 * 180.02562 * 10 9 7 32 32 H 1.07994 * 119.99037 * 0.02562 * 18 17 15 33 33 H 1.07993 * 120.01631 * 180.25743 * 19 18 17 34 34 H 1.08000 * 120.01087 * 180.02562 * 22 20 19 35 35 H 1.07994 * 119.98725 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 2.0013 1.3867 0.0000 4 6 3.4491 1.2106 -0.5228 5 6 3.3001 0.1010 -1.5952 6 1 4.1470 -0.5840 -1.5548 7 6 3.1843 0.7108 -2.9684 8 1 2.2736 0.5925 -3.5368 9 6 4.2410 1.4197 -3.4993 10 7 5.3498 1.5642 -2.8070 11 14 4.0972 2.1761 -5.2012 12 1 2.9709 3.1437 -5.2193 13 1 5.3602 2.8810 -5.5380 14 1 3.8462 1.1055 -6.1991 15 6 1.9991 -0.6354 -1.2259 16 1 1.2759 -0.5403 -2.0359 17 6 2.2893 -2.0911 -0.9653 18 6 2.8235 -2.4823 0.2482 19 6 3.0856 -3.8175 0.4900 20 6 2.8226 -4.7622 -0.4875 21 9 3.0828 -6.0673 -0.2539 22 6 2.2923 -4.3685 -1.7044 23 6 2.0257 -3.0334 -1.9419 24 1 -0.3633 -1.0266 -0.0467 25 1 -0.3634 0.4729 0.9124 26 1 -0.3633 0.5537 -0.8657 27 1 1.4237 2.0204 -0.6730 28 1 2.0013 1.7987 1.0091 29 1 3.8123 2.1351 -0.9716 30 1 4.1122 0.8866 0.2795 31 1 6.0931 2.0632 -3.1803 32 1 3.0323 -1.7449 1.0090 33 1 3.4991 -4.1236 1.4396 34 1 2.0864 -5.1045 -2.4675 35 1 1.6125 -2.7260 -2.8911 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252653.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:03 Heat of formation + Delta-G solvation = -34.469268 kcal Electronic energy + Delta-G solvation = -18225.474431 eV Core-core repulsion = 15329.809417 eV Total energy + Delta-G solvation = -2895.665014 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -49.81350 -40.73509 -38.78026 -35.09358 -32.60447 -32.11474 -31.93794 -28.95239 -26.99241 -25.42330 -23.96027 -23.16161 -21.73317 -20.79752 -18.59055 -18.40530 -17.15727 -17.03501 -16.71103 -16.49797 -15.83420 -15.51257 -15.01413 -14.56193 -14.42075 -14.31605 -14.07834 -13.98522 -13.31182 -13.30142 -12.87898 -12.64079 -12.47444 -12.22751 -12.09358 -12.02885 -11.80531 -11.73707 -11.32868 -10.86029 -10.45094 -9.94370 -9.34440 -9.30575 -8.12605 -6.23981 0.28265 0.40738 1.41368 1.41823 1.49167 2.41579 2.72594 3.17691 3.22732 3.36973 3.91037 4.00043 4.08675 4.19813 4.31941 4.45702 4.50184 4.53901 4.67692 4.73877 4.81655 4.93246 5.02481 5.08880 5.16068 5.22960 5.26182 5.38318 5.42713 5.58673 5.71602 5.82031 5.87275 6.01387 6.05986 6.30639 6.40118 6.85784 7.43573 8.94823 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021229 B = 0.007225 C = 0.006166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1318.603485 B = 3874.362287 C = 4539.970837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.048 3.952 4 C -0.098 4.098 5 C 0.055 3.945 6 H 0.001 0.999 7 C -0.530 4.530 8 H 0.052 0.948 9 C 0.018 3.982 10 N -0.914 5.914 11 Si 0.948 3.052 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.272 1.272 15 C 0.114 3.886 16 H 0.046 0.954 17 C -0.073 4.073 18 C -0.071 4.071 19 C -0.156 4.156 20 C 0.071 3.929 21 F -0.148 7.148 22 C -0.153 4.153 23 C -0.099 4.099 24 H 0.068 0.932 25 H 0.083 0.917 26 H 0.022 0.978 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.049 0.951 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.135 0.865 33 H 0.151 0.849 34 H 0.152 0.848 35 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.782 -6.631 5.191 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.242 5.242 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.036 3.964 6 H 0.019 0.981 7 C -0.568 4.568 8 H 0.070 0.930 9 C -0.181 4.181 10 N -0.553 5.553 11 Si 0.774 3.226 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.197 1.197 15 C 0.006 3.994 16 H 0.064 0.936 17 C -0.074 4.074 18 C -0.089 4.089 19 C -0.175 4.175 20 C 0.052 3.948 21 F -0.127 7.127 22 C -0.171 4.171 23 C -0.118 4.118 24 H 0.087 0.913 25 H 0.102 0.898 26 H 0.040 0.960 27 H 0.052 0.948 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.153 0.847 33 H 0.169 0.831 34 H 0.170 0.830 35 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.456 -6.878 5.663 11.617 hybrid contribution 0.124 0.779 -1.735 1.906 sum -7.331 -6.099 3.927 10.313 Atomic orbital electron populations 1.22513 0.87279 1.01924 1.01164 1.64596 1.08643 1.14898 1.36079 1.23119 0.95302 0.89307 1.00186 1.22339 0.94474 1.00187 0.96705 1.19438 0.90977 0.92375 0.93651 0.98082 1.21472 0.99999 1.33706 1.01584 0.92981 1.25665 0.95023 0.96738 1.00712 1.70081 1.04725 1.41676 1.38814 0.85770 0.77373 0.78769 0.80730 1.19589 1.21111 1.19740 1.21373 0.97312 0.90371 0.90373 0.93599 1.20058 0.97977 0.94923 0.94432 1.20914 0.96055 0.94938 0.96976 1.21316 1.03396 0.92606 1.00163 1.17809 1.03071 0.77933 0.96016 1.91450 1.92264 1.33886 1.95055 1.21212 1.02140 0.97125 0.96640 1.21039 0.99528 0.91905 0.99280 0.91329 0.89792 0.95984 0.94771 0.89256 0.93217 0.94386 0.92998 0.84689 0.83140 0.83022 0.84786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.40 127.69 1.20 1.76 16 2 N -0.52 -18.12 4.39 -888.43 -3.90 -22.03 16 3 C 0.05 1.78 6.56 86.65 0.57 2.35 16 4 C -0.10 -4.49 6.18 31.95 0.20 -4.29 16 5 C 0.05 2.66 2.51 -10.51 -0.03 2.63 16 6 H 0.00 0.06 7.68 -2.38 -0.02 0.04 16 7 C -0.53 -28.14 8.49 25.60 0.22 -27.92 16 8 H 0.05 2.71 7.34 -2.91 -0.02 2.69 16 9 C 0.02 0.98 5.10 84.66 0.43 1.41 16 10 N -0.91 -52.08 12.18 21.45 0.26 -51.82 16 11 Si 0.95 42.62 29.54 68.60 2.03 44.64 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 14 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 15 C 0.11 4.54 2.31 44.31 0.10 4.64 16 16 H 0.05 1.90 6.87 -2.39 -0.02 1.88 16 17 C -0.07 -2.65 4.75 -19.86 -0.09 -2.74 16 18 C -0.07 -2.36 9.33 22.26 0.21 -2.15 16 19 C -0.16 -4.62 10.03 22.32 0.22 -4.40 16 20 C 0.07 2.12 7.30 22.38 0.16 2.28 16 21 F -0.15 -4.29 17.27 44.97 0.78 -3.52 16 22 C -0.15 -4.46 10.03 22.31 0.22 -4.23 16 23 C -0.10 -3.25 9.67 22.26 0.22 -3.04 16 24 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.02 0.63 8.00 -2.39 -0.02 0.62 16 27 H 0.03 1.30 7.96 -2.39 -0.02 1.28 16 28 H 0.09 2.83 8.14 -2.39 -0.02 2.81 16 29 H 0.05 2.54 6.81 -2.39 -0.02 2.53 16 30 H 0.04 1.70 8.14 -2.38 -0.02 1.68 16 31 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 32 H 0.14 4.51 7.68 -2.91 -0.02 4.49 16 33 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.15 3.60 8.06 -2.91 -0.02 3.57 16 35 H 0.13 4.15 8.05 -2.91 -0.02 4.12 16 Total: -1.00 -58.02 293.74 3.86 -54.16 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 1.07 Total: 12.25 kcal Atomic # 6 Polarization: -37.32 SS G_CDS: 3.63 Total: -33.69 kcal Atomic # 7 Polarization: -70.20 SS G_CDS: -3.64 Total: -73.84 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.64 kcal Total: -58.02 3.86 -54.16 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252653.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.686 kcal (2) G-P(sol) polarization free energy of solvation -58.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.155 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds