Wall clock time and date at job start Mon Mar 30 2020 07:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48806 * 111.18299 * 2 1 4 4 C 1.54943 * 103.35046 * 159.50502 * 3 2 1 5 5 C 1.54601 * 102.91553 * 322.68835 * 4 3 2 6 6 H 1.09004 * 110.38803 * 140.91897 * 5 4 3 7 7 C 1.50702 * 110.30819 * 263.03980 * 5 4 3 8 8 H 1.07997 * 119.99884 * 115.71725 * 7 5 4 9 9 C 1.37882 * 119.99864 * 295.72110 * 7 5 4 10 10 N 1.31511 * 119.99998 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 119.99681 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47543 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47013 * 120.00099 * 11 9 7 14 14 H 1.48500 * 109.47229 * 239.99554 * 11 9 7 15 15 C 1.47909 * 110.99739 * 117.33237 * 2 1 3 16 16 H 1.08997 * 109.91759 * 333.70993 * 15 2 1 17 17 C 1.50701 * 109.91463 * 94.80733 * 15 2 1 18 18 C 1.38248 * 119.97048 * 218.19764 * 17 15 2 19 19 C 1.38196 * 120.02253 * 179.97438 * 18 17 15 20 20 C 1.38465 * 119.97663 * 359.97438 * 19 18 17 21 21 F 1.35093 * 120.02533 * 179.72758 * 20 19 18 22 22 C 1.38463 * 119.94794 * 359.97438 * 20 19 18 23 23 C 1.38198 * 119.97154 * 0.02562 * 22 20 19 24 24 H 1.08993 * 109.47573 * 302.66440 * 1 2 3 25 25 H 1.09007 * 109.47215 * 62.66899 * 1 2 3 26 26 H 1.09009 * 109.47189 * 182.66502 * 1 2 3 27 27 H 1.08993 * 110.52195 * 41.06945 * 3 2 1 28 28 H 1.09000 * 110.84014 * 278.08336 * 3 2 1 29 29 H 1.09000 * 110.72353 * 204.33352 * 4 3 2 30 30 H 1.08998 * 110.87492 * 81.11100 * 4 3 2 31 31 H 0.97002 * 119.99996 * 180.02562 * 10 9 7 32 32 H 1.07992 * 119.98805 * 359.95289 * 18 17 15 33 33 H 1.08007 * 120.01270 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00989 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.98702 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2973 0.1060 1.5980 6 1 4.1456 -0.5777 1.5639 7 6 3.1759 0.7194 2.9692 8 1 2.2636 0.6008 3.5349 9 6 4.2295 1.4320 3.5014 10 7 5.3405 1.5760 2.8127 11 14 4.0792 2.1917 5.2013 12 1 2.7388 1.8867 5.7631 13 1 5.1283 1.6294 6.0893 14 1 4.2509 3.6634 5.1028 15 6 1.9990 -0.6340 1.2267 16 1 1.2743 -0.5411 2.0355 17 6 2.2938 -2.0888 0.9664 18 6 2.0319 -3.0320 1.9426 19 6 2.3013 -4.3664 1.7048 20 6 2.8332 -4.7587 0.4881 21 9 3.1021 -6.0622 0.2566 22 6 3.0941 -3.8132 -0.4893 23 6 2.8238 -2.4794 -0.2492 24 1 -0.3634 0.5546 0.8651 25 1 -0.3634 0.4719 -0.9130 26 1 -0.3634 -1.0266 0.0478 27 1 1.4272 2.0219 0.6706 28 1 2.0132 1.8009 -1.0086 29 1 3.8148 2.1353 0.9776 30 1 4.1201 0.8842 -0.2696 31 1 6.0819 2.0771 3.1872 32 1 1.6170 -2.7259 2.8915 33 1 2.0963 -5.1032 2.4675 34 1 3.5094 -4.1180 -1.4385 35 1 3.0276 -1.7417 -1.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260252675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:07 Heat of formation + Delta-G solvation = -20.634349 kcal Electronic energy + Delta-G solvation = -18225.763633 eV Core-core repulsion = 15330.698547 eV Total energy + Delta-G solvation = -2895.065087 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.56359 -39.28351 -37.33820 -33.20614 -31.11173 -30.68797 -30.44342 -27.28521 -25.41554 -23.74884 -22.65825 -21.76511 -20.06503 -19.20204 -17.28594 -16.53990 -15.80287 -15.56819 -15.25459 -14.83364 -14.19127 -14.17374 -13.57456 -13.19248 -13.06540 -12.80563 -12.64712 -12.36930 -11.93034 -11.76663 -11.08503 -10.95403 -10.72943 -10.67803 -10.53850 -10.49253 -10.26312 -9.95872 -9.61209 -8.89857 -8.67226 -8.43400 -7.96093 -7.84168 -6.08780 -4.14045 1.60208 1.68441 3.24043 3.32969 3.35431 4.04699 4.35492 4.64111 4.66816 5.16968 5.21644 5.22757 5.47222 5.63177 5.75660 5.80658 5.83557 5.92477 6.15709 6.18202 6.21536 6.34731 6.37608 6.47279 6.53264 6.65639 6.71402 7.00556 7.08157 7.13267 7.34747 7.53323 7.58210 7.73095 7.80370 7.87694 8.35040 8.88107 9.50507 10.99298 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.007219 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.097216 B = 3877.773832 C = 4540.337270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.522 5.522 3 C 0.038 3.962 4 C -0.101 4.101 5 C 0.056 3.944 6 H 0.038 0.962 7 C -0.516 4.516 8 H 0.055 0.945 9 C 0.065 3.935 10 N -0.884 5.884 11 Si 0.888 3.112 12 H -0.274 1.274 13 H -0.283 1.283 14 H -0.284 1.284 15 C 0.102 3.898 16 H 0.057 0.943 17 C -0.052 4.052 18 C -0.090 4.090 19 C -0.157 4.157 20 C 0.075 3.925 21 F -0.151 7.151 22 C -0.160 4.160 23 C -0.064 4.064 24 H 0.024 0.976 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.040 0.960 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.040 0.960 31 H 0.261 0.739 32 H 0.129 0.871 33 H 0.127 0.873 34 H 0.127 0.873 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.549 -5.931 -4.955 10.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.245 5.245 3 C -0.089 4.089 4 C -0.140 4.140 5 C 0.037 3.963 6 H 0.057 0.943 7 C -0.554 4.554 8 H 0.073 0.927 9 C -0.138 4.138 10 N -0.522 5.522 11 Si 0.716 3.284 12 H -0.198 1.198 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.006 4.006 16 H 0.075 0.925 17 C -0.053 4.053 18 C -0.109 4.109 19 C -0.176 4.176 20 C 0.056 3.944 21 F -0.130 7.130 22 C -0.179 4.179 23 C -0.082 4.082 24 H 0.043 0.957 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.058 0.942 28 H 0.081 0.919 29 H 0.099 0.901 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.145 0.855 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -6.214 -6.174 -5.421 10.302 hybrid contribution -0.249 0.621 1.673 1.802 sum -6.463 -5.553 -3.748 9.309 Atomic orbital electron populations 1.22428 0.89426 1.00997 1.00072 1.64598 1.06656 1.15961 1.37325 1.23256 0.97928 0.88627 0.99081 1.22434 0.92092 1.02198 0.97229 1.19498 0.90311 0.92448 0.94071 0.94347 1.21218 1.00181 1.33472 1.00543 0.92720 1.24945 0.95255 0.96227 0.97342 1.69976 1.04121 1.40860 1.37249 0.86596 0.78124 0.79029 0.84637 1.19831 1.20950 1.20994 1.21669 0.99599 0.89400 0.89888 0.92503 1.20082 0.96353 0.95647 0.93234 1.20917 0.99225 0.91420 0.99332 1.20982 1.03263 0.97251 0.96131 1.17676 1.03166 0.77786 0.95802 1.91435 1.92141 1.34306 1.95107 1.21110 1.04226 0.93375 0.99216 1.20909 0.95743 0.94215 0.97332 0.95734 0.92175 0.92248 0.94174 0.91939 0.90100 0.94137 0.92942 0.85354 0.85514 0.85510 0.84478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.30 9.41 60.06 0.57 0.87 16 2 N -0.52 -9.43 4.39 -231.92 -1.02 -10.45 16 3 C 0.04 0.72 6.58 -1.74 -0.01 0.71 16 4 C -0.10 -2.25 6.17 -24.86 -0.15 -2.41 16 5 C 0.06 1.32 2.50 -90.41 -0.23 1.09 16 6 H 0.04 1.02 7.68 -51.93 -0.40 0.62 16 7 C -0.52 -13.44 8.49 -34.44 -0.29 -13.73 16 8 H 0.05 1.42 7.34 -52.49 -0.39 1.03 16 9 C 0.06 1.72 5.09 -17.82 -0.09 1.63 16 10 N -0.88 -24.52 12.15 55.43 0.67 -23.84 16 11 Si 0.89 20.62 29.54 -169.99 -5.02 15.60 16 12 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 13 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 14 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 15 C 0.10 2.04 2.32 -67.79 -0.16 1.88 16 16 H 0.06 1.17 6.86 -51.93 -0.36 0.82 16 17 C -0.05 -0.96 4.75 -104.62 -0.50 -1.46 16 18 C -0.09 -1.53 9.67 -39.59 -0.38 -1.91 16 19 C -0.16 -2.45 10.03 -39.51 -0.40 -2.85 16 20 C 0.07 1.20 7.30 -39.42 -0.29 0.91 16 21 F -0.15 -2.38 17.27 2.25 0.04 -2.34 16 22 C -0.16 -2.52 10.03 -39.51 -0.40 -2.92 16 23 C -0.06 -1.09 9.33 -39.59 -0.37 -1.46 16 24 H 0.02 0.38 8.01 -51.93 -0.42 -0.04 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 27 H 0.04 0.78 7.97 -51.93 -0.41 0.36 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.08 2.01 6.77 -51.93 -0.35 1.66 16 30 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 32 H 0.13 2.03 8.05 -52.49 -0.42 1.60 16 33 H 0.13 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.13 1.70 8.06 -52.49 -0.42 1.28 16 35 H 0.14 2.33 7.67 -52.49 -0.40 1.93 16 LS Contribution 293.67 15.07 4.43 4.43 Total: -1.00 -27.05 293.67 -8.41 -35.47 By element: Atomic # 1 Polarization: 5.59 SS G_CDS: -4.82 Total: 0.77 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -2.69 Total: -19.63 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: -0.34 Total: -34.29 kcal Atomic # 9 Polarization: -2.38 SS G_CDS: 0.04 Total: -2.34 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -27.05 -8.41 -35.47 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.832 kcal (2) G-P(sol) polarization free energy of solvation -27.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.414 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds