Wall clock time and date at job start Mon Mar 30 2020 07:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.48806 * 111.18299 * 2 1 4 4 C 1.54943 * 103.35046 * 159.50502 * 3 2 1 5 5 C 1.54601 * 102.91553 * 322.68835 * 4 3 2 6 6 H 1.09004 * 110.38803 * 140.91897 * 5 4 3 7 7 C 1.50702 * 110.30819 * 263.03980 * 5 4 3 8 8 H 1.07997 * 119.99884 * 115.71725 * 7 5 4 9 9 C 1.37882 * 119.99864 * 295.72110 * 7 5 4 10 10 N 1.31511 * 119.99998 * 359.97438 * 9 7 5 11 11 Si 1.86797 * 119.99681 * 180.02562 * 9 7 5 12 12 H 1.48498 * 109.47543 * 359.97438 * 11 9 7 13 13 H 1.48505 * 109.47013 * 120.00099 * 11 9 7 14 14 H 1.48500 * 109.47229 * 239.99554 * 11 9 7 15 15 C 1.47909 * 110.99739 * 117.33237 * 2 1 3 16 16 H 1.08997 * 109.91759 * 333.70993 * 15 2 1 17 17 C 1.50701 * 109.91463 * 94.80733 * 15 2 1 18 18 C 1.38248 * 119.97048 * 218.19764 * 17 15 2 19 19 C 1.38196 * 120.02253 * 179.97438 * 18 17 15 20 20 C 1.38465 * 119.97663 * 359.97438 * 19 18 17 21 21 F 1.35093 * 120.02533 * 179.72758 * 20 19 18 22 22 C 1.38463 * 119.94794 * 359.97438 * 20 19 18 23 23 C 1.38198 * 119.97154 * 0.02562 * 22 20 19 24 24 H 1.08993 * 109.47573 * 302.66440 * 1 2 3 25 25 H 1.09007 * 109.47215 * 62.66899 * 1 2 3 26 26 H 1.09009 * 109.47189 * 182.66502 * 1 2 3 27 27 H 1.08993 * 110.52195 * 41.06945 * 3 2 1 28 28 H 1.09000 * 110.84014 * 278.08336 * 3 2 1 29 29 H 1.09000 * 110.72353 * 204.33352 * 4 3 2 30 30 H 1.08998 * 110.87492 * 81.11100 * 4 3 2 31 31 H 0.97002 * 119.99996 * 180.02562 * 10 9 7 32 32 H 1.07992 * 119.98805 * 359.95289 * 18 17 15 33 33 H 1.08007 * 120.01270 * 180.02562 * 19 18 17 34 34 H 1.08000 * 120.00989 * 179.97438 * 22 20 19 35 35 H 1.08001 * 119.98702 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 2.0067 1.3875 0.0000 4 6 3.4527 1.2108 0.5278 5 6 3.2973 0.1060 1.5980 6 1 4.1456 -0.5777 1.5639 7 6 3.1759 0.7194 2.9692 8 1 2.2636 0.6008 3.5349 9 6 4.2295 1.4320 3.5014 10 7 5.3405 1.5760 2.8127 11 14 4.0792 2.1917 5.2013 12 1 2.7388 1.8867 5.7631 13 1 5.1283 1.6294 6.0893 14 1 4.2509 3.6634 5.1028 15 6 1.9990 -0.6340 1.2267 16 1 1.2743 -0.5411 2.0355 17 6 2.2938 -2.0888 0.9664 18 6 2.0319 -3.0320 1.9426 19 6 2.3013 -4.3664 1.7048 20 6 2.8332 -4.7587 0.4881 21 9 3.1021 -6.0622 0.2566 22 6 3.0941 -3.8132 -0.4893 23 6 2.8238 -2.4794 -0.2492 24 1 -0.3634 0.5546 0.8651 25 1 -0.3634 0.4719 -0.9130 26 1 -0.3634 -1.0266 0.0478 27 1 1.4272 2.0219 0.6706 28 1 2.0132 1.8009 -1.0086 29 1 3.8148 2.1353 0.9776 30 1 4.1201 0.8842 -0.2696 31 1 6.0819 2.0771 3.1872 32 1 1.6170 -2.7259 2.8915 33 1 2.0963 -5.1032 2.4675 34 1 3.5094 -4.1180 -1.4385 35 1 3.0276 -1.7417 -1.0112 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260252675.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:07 Heat of formation + Delta-G solvation = -34.497117 kcal Electronic energy + Delta-G solvation = -18226.364768 eV Core-core repulsion = 15330.698547 eV Total energy + Delta-G solvation = -2895.666221 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.81575 -40.73366 -38.77705 -35.09840 -32.59673 -32.12659 -31.93806 -28.94864 -26.99395 -25.43150 -23.95909 -23.16208 -21.72960 -20.79473 -18.59012 -18.41099 -17.15922 -17.03252 -16.71314 -16.49840 -15.82614 -15.51217 -15.00746 -14.56233 -14.43310 -14.31511 -14.08105 -13.98696 -13.31424 -13.29478 -12.92215 -12.61355 -12.48679 -12.20496 -12.09056 -12.02556 -11.80290 -11.74300 -11.33650 -10.84138 -10.45787 -9.94334 -9.34269 -9.30481 -8.12974 -6.24195 0.28319 0.40818 1.38688 1.41788 1.51393 2.41276 2.72634 3.17520 3.22177 3.37134 3.91059 4.00208 4.08795 4.19824 4.31631 4.45834 4.50225 4.53920 4.67921 4.74045 4.81980 4.93413 5.02524 5.08944 5.16269 5.23140 5.26351 5.38915 5.42813 5.59160 5.71599 5.82291 5.87263 6.01491 6.06087 6.30690 6.40047 6.86008 7.43471 8.94756 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.021270 B = 0.007219 C = 0.006165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.097216 B = 3877.773832 C = 4540.337270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.519 5.519 3 C 0.048 3.952 4 C -0.098 4.098 5 C 0.053 3.947 6 H 0.001 0.999 7 C -0.527 4.527 8 H 0.052 0.948 9 C 0.017 3.983 10 N -0.914 5.914 11 Si 0.948 3.052 12 H -0.267 1.267 13 H -0.283 1.283 14 H -0.280 1.280 15 C 0.114 3.886 16 H 0.046 0.954 17 C -0.073 4.073 18 C -0.099 4.099 19 C -0.153 4.153 20 C 0.071 3.929 21 F -0.148 7.148 22 C -0.156 4.156 23 C -0.071 4.071 24 H 0.021 0.979 25 H 0.083 0.917 26 H 0.068 0.932 27 H 0.034 0.966 28 H 0.089 0.911 29 H 0.050 0.950 30 H 0.037 0.963 31 H 0.261 0.739 32 H 0.134 0.866 33 H 0.152 0.848 34 H 0.151 0.849 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.773 -6.651 -5.232 11.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.243 5.243 3 C -0.079 4.079 4 C -0.137 4.137 5 C 0.034 3.966 6 H 0.019 0.981 7 C -0.565 4.565 8 H 0.070 0.930 9 C -0.182 4.182 10 N -0.553 5.553 11 Si 0.774 3.226 12 H -0.191 1.191 13 H -0.209 1.209 14 H -0.206 1.206 15 C 0.006 3.994 16 H 0.064 0.936 17 C -0.074 4.074 18 C -0.118 4.118 19 C -0.171 4.171 20 C 0.052 3.948 21 F -0.127 7.127 22 C -0.175 4.175 23 C -0.089 4.089 24 H 0.040 0.960 25 H 0.102 0.898 26 H 0.087 0.913 27 H 0.053 0.947 28 H 0.107 0.893 29 H 0.069 0.931 30 H 0.056 0.944 31 H 0.070 0.930 32 H 0.152 0.848 33 H 0.170 0.830 34 H 0.169 0.831 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.458 -6.900 -5.701 11.650 hybrid contribution 0.147 0.785 1.737 1.912 sum -7.311 -6.116 -3.964 10.323 Atomic orbital electron populations 1.22509 0.87252 1.01920 1.01163 1.64644 1.08620 1.14984 1.36011 1.23162 0.95250 0.89290 1.00192 1.22262 0.94487 1.00215 0.96702 1.19382 0.91025 0.92436 0.93730 0.98111 1.21529 0.99982 1.33293 1.01707 0.93007 1.25663 0.95038 0.96801 1.00696 1.70093 1.04757 1.41705 1.38772 0.85654 0.78195 0.78193 0.80538 1.19105 1.20890 1.20621 1.21368 0.97279 0.90389 0.90376 0.93608 1.20062 0.98004 0.94921 0.94413 1.21039 0.99519 0.91897 0.99302 1.21214 1.02148 0.97134 0.96615 1.17809 1.03014 0.77976 0.96038 1.91446 1.92086 1.34029 1.95093 1.21317 1.03365 0.92618 1.00187 1.20914 0.96060 0.94949 0.96960 0.95992 0.89789 0.91322 0.94729 0.89260 0.93148 0.94391 0.93018 0.84785 0.83016 0.83142 0.84674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.57 9.41 127.69 1.20 1.77 16 2 N -0.52 -18.12 4.39 -887.66 -3.89 -22.02 16 3 C 0.05 1.79 6.58 86.60 0.57 2.36 16 4 C -0.10 -4.47 6.17 31.80 0.20 -4.27 16 5 C 0.05 2.59 2.50 -10.66 -0.03 2.56 16 6 H 0.00 0.04 7.68 -2.39 -0.02 0.02 16 7 C -0.53 -27.99 8.49 25.60 0.22 -27.78 16 8 H 0.05 2.72 7.34 -2.91 -0.02 2.69 16 9 C 0.02 0.94 5.09 84.66 0.43 1.37 16 10 N -0.91 -52.02 12.15 21.45 0.26 -51.76 16 11 Si 0.95 42.67 29.54 68.60 2.03 44.70 16 12 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 15 C 0.11 4.55 2.32 44.31 0.10 4.65 16 16 H 0.05 1.90 6.86 -2.39 -0.02 1.88 16 17 C -0.07 -2.65 4.75 -19.86 -0.09 -2.75 16 18 C -0.10 -3.25 9.67 22.26 0.22 -3.04 16 19 C -0.15 -4.45 10.03 22.31 0.22 -4.23 16 20 C 0.07 2.12 7.30 22.38 0.16 2.28 16 21 F -0.15 -4.29 17.27 44.97 0.78 -3.52 16 22 C -0.16 -4.62 10.03 22.31 0.22 -4.40 16 23 C -0.07 -2.36 9.33 22.26 0.21 -2.15 16 24 H 0.02 0.63 8.01 -2.39 -0.02 0.61 16 25 H 0.08 1.99 8.14 -2.38 -0.02 1.98 16 26 H 0.07 1.83 8.14 -2.38 -0.02 1.81 16 27 H 0.03 1.31 7.97 -2.39 -0.02 1.29 16 28 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 29 H 0.05 2.58 6.77 -2.39 -0.02 2.56 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.26 14.14 8.31 -92.71 -0.77 13.37 16 32 H 0.13 4.14 8.05 -2.91 -0.02 4.12 16 33 H 0.15 3.59 8.06 -2.91 -0.02 3.57 16 34 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 35 H 0.14 4.51 7.67 -2.91 -0.02 4.48 16 Total: -1.00 -58.08 293.67 3.87 -54.21 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 1.07 Total: 12.00 kcal Atomic # 6 Polarization: -37.24 SS G_CDS: 3.63 Total: -33.61 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -3.63 Total: -73.78 kcal Atomic # 9 Polarization: -4.29 SS G_CDS: 0.78 Total: -3.52 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.70 kcal Total: -58.08 3.87 -54.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260252675.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.712 kcal (2) G-P(sol) polarization free energy of solvation -58.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds