Wall clock time and date at job start Mon Mar 30 2020 07:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99850 * 2 1 4 4 C 1.39826 * 110.99629 * 123.95330 * 2 1 3 5 5 C 1.38898 * 120.04651 * 305.48748 * 4 2 1 6 6 C 1.38103 * 119.94665 * 180.23258 * 5 4 2 7 7 C 1.38482 * 120.05111 * 359.79301 * 6 5 4 8 8 F 1.35095 * 119.95389 * 179.97438 * 7 6 5 9 9 C 1.38443 * 120.09783 * 0.02562 * 7 6 5 10 10 C 1.38145 * 120.05123 * 359.97438 * 9 7 6 11 11 C 1.50697 * 120.02939 * 179.97438 * 10 9 7 12 12 C 1.50691 * 115.55294 * 123.02527 * 11 10 9 13 13 H 1.08003 * 120.00335 * 146.55940 * 12 11 10 14 14 C 1.37874 * 120.00225 * 326.56716 * 12 11 10 15 15 N 1.31519 * 120.00467 * 162.96052 * 14 12 11 16 16 Si 1.86805 * 120.00015 * 342.95971 * 14 12 11 17 17 H 1.48499 * 109.46969 * 93.11600 * 16 14 12 18 18 H 1.48496 * 109.47070 * 213.11881 * 16 14 12 19 19 H 1.48506 * 109.46933 * 333.12100 * 16 14 12 20 20 C 1.53001 * 117.49439 * 337.35783 * 11 10 9 21 21 C 1.52999 * 117.49739 * 268.70495 * 11 10 9 22 22 H 1.08993 * 109.47358 * 294.79667 * 1 2 3 23 23 H 1.09007 * 109.46753 * 54.79351 * 1 2 3 24 24 H 1.09001 * 109.47403 * 174.78861 * 1 2 3 25 25 H 1.09007 * 109.46909 * 187.31200 * 3 2 1 26 26 H 1.08994 * 109.47485 * 307.31451 * 3 2 1 27 27 H 1.09006 * 109.47232 * 67.31679 * 3 2 1 28 28 H 1.07997 * 120.02909 * 359.97438 * 5 4 2 29 29 H 1.08005 * 119.97095 * 179.77207 * 6 5 4 30 30 H 1.08000 * 119.97654 * 180.02562 * 9 7 6 31 31 H 0.97000 * 120.00190 * 184.99364 * 15 14 12 32 32 H 1.09001 * 117.50562 * 0.02562 * 20 11 10 33 33 H 1.09004 * 117.49928 * 145.02276 * 20 11 10 34 34 H 1.09004 * 117.49788 * 214.98061 * 21 11 10 35 35 H 1.09002 * 117.50117 * 359.96809 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9700 -0.7291 1.0828 5 6 1.5676 -0.4194 2.3757 6 6 2.0674 -1.1377 3.4440 7 6 2.9659 -2.1689 3.2268 8 9 3.4540 -2.8699 4.2734 9 6 3.3654 -2.4817 1.9388 10 6 2.8681 -1.7659 0.8670 11 6 3.3038 -2.1065 -0.5348 12 6 2.1943 -2.4494 -1.4951 13 1 2.2829 -2.1864 -2.5388 14 6 1.0659 -3.0988 -1.0413 15 7 -0.0281 -3.1042 -1.7713 16 14 1.0909 -3.9712 0.6103 17 1 0.6009 -3.0480 1.6652 18 1 0.2125 -5.1670 0.5518 19 1 2.4795 -4.3920 0.9269 20 6 4.6350 -2.8420 -0.7016 21 6 4.5204 -1.3674 -1.0956 22 1 -0.3634 0.4310 0.9328 23 1 -0.3633 0.5925 -0.8398 24 1 -0.3634 -1.0234 -0.0933 25 1 3.0773 1.3453 -0.1308 26 1 1.5441 1.9339 -0.8173 27 1 1.7556 1.8527 0.9482 28 1 0.8676 0.3853 2.5456 29 1 1.7576 -0.8948 4.4498 30 1 4.0659 -3.2866 1.7716 31 1 -0.8426 -3.4979 -1.4214 32 1 5.1955 -3.0799 0.2025 33 1 4.7084 -3.5736 -1.5063 34 1 4.5184 -1.1293 -2.1593 35 1 5.0053 -0.6344 -0.4508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:50 Heat of formation + Delta-G solvation = 33.552863 kcal Electronic energy + Delta-G solvation = -19223.036716 eV Core-core repulsion = 16330.321363 eV Total energy + Delta-G solvation = -2892.715353 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -48.50026 -39.73088 -36.46133 -35.49525 -32.10709 -30.33413 -28.97019 -26.96673 -25.81974 -23.94369 -22.77594 -21.51965 -20.39818 -19.24163 -17.46301 -16.14598 -15.99573 -15.77383 -15.39189 -14.66478 -14.21526 -13.97098 -13.89232 -13.61809 -12.83900 -12.75065 -12.56139 -12.33495 -11.99411 -11.69372 -11.38486 -11.18095 -10.93451 -10.74838 -10.45006 -10.38722 -10.11120 -9.49916 -9.32202 -9.14663 -8.27379 -8.16429 -7.89232 -7.57157 -6.04292 -3.91179 1.58084 1.68373 3.34211 3.44382 3.50893 3.99101 4.47986 4.49474 4.65579 4.85784 5.14604 5.28577 5.50315 5.58730 5.62325 5.73780 5.81038 6.01538 6.04359 6.11030 6.19972 6.25454 6.30152 6.36110 6.50439 6.55585 6.59746 6.74082 6.76108 6.90643 7.14040 7.22927 7.29497 7.63465 7.82545 8.08093 8.56882 8.99211 9.61151 11.04754 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.013371 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.466783 B = 2093.554710 C = 2338.155915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.469 5.469 3 C 0.034 3.966 4 C 0.110 3.890 5 C -0.134 4.134 6 C -0.158 4.158 7 C 0.078 3.922 8 F -0.148 7.148 9 C -0.154 4.154 10 C 0.014 3.986 11 C 0.062 3.938 12 C -0.447 4.447 13 H 0.078 0.922 14 C 0.095 3.905 15 N -0.887 5.887 16 Si 0.841 3.159 17 H -0.273 1.273 18 H -0.298 1.298 19 H -0.254 1.254 20 C -0.219 4.219 21 C -0.171 4.171 22 H 0.009 0.991 23 H 0.067 0.933 24 H 0.083 0.917 25 H 0.066 0.934 26 H 0.068 0.932 27 H 0.016 0.984 28 H 0.124 0.876 29 H 0.126 0.874 30 H 0.137 0.863 31 H 0.261 0.739 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.389 6.387 7.216 10.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 N -0.188 5.188 3 C -0.113 4.113 4 C 0.015 3.985 5 C -0.154 4.154 6 C -0.178 4.178 7 C 0.059 3.941 8 F -0.127 7.127 9 C -0.174 4.174 10 C 0.013 3.987 11 C 0.061 3.939 12 C -0.484 4.484 13 H 0.096 0.904 14 C -0.108 4.108 15 N -0.524 5.524 16 Si 0.670 3.330 17 H -0.199 1.199 18 H -0.226 1.226 19 H -0.178 1.178 20 C -0.256 4.256 21 C -0.208 4.208 22 H 0.028 0.972 23 H 0.086 0.914 24 H 0.102 0.898 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.034 0.966 28 H 0.142 0.858 29 H 0.144 0.856 30 H 0.154 0.846 31 H 0.071 0.929 32 H 0.086 0.914 33 H 0.106 0.894 34 H 0.104 0.896 35 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.362 6.037 6.737 9.650 hybrid contribution -0.390 -0.315 1.977 2.040 sum 2.971 5.722 8.714 10.840 Atomic orbital electron populations 1.22416 0.86072 1.03992 0.98454 1.59368 1.07945 1.11740 1.39715 1.22405 1.01059 0.88437 0.99417 1.18600 0.96317 0.95424 0.88134 1.21457 1.00779 1.00278 0.92930 1.20763 0.99870 0.97362 0.99791 1.17622 0.98552 0.94165 0.83791 1.91430 1.86802 1.77943 1.56540 1.21151 1.03305 1.02391 0.90507 1.19399 0.93166 0.91346 0.94830 1.17913 0.88497 0.98532 0.88983 1.19999 0.98830 1.35193 0.94383 0.90402 1.24730 0.95029 0.95276 0.95741 1.69917 1.00055 1.44713 1.37665 0.87537 0.79172 0.80442 0.85892 1.19905 1.22610 1.17839 1.23305 1.05811 0.94695 1.01835 1.22710 1.04081 0.93705 1.00302 0.97236 0.91449 0.89815 0.91559 0.91326 0.96592 0.85823 0.85612 0.84559 0.92865 0.91403 0.89435 0.89629 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.31 60.07 0.56 1.28 16 2 N -0.47 -9.29 3.57 -186.83 -0.67 -9.96 16 3 C 0.03 0.53 9.50 60.06 0.57 1.10 16 4 C 0.11 2.24 3.54 -83.74 -0.30 1.94 16 5 C -0.13 -2.42 8.53 -39.39 -0.34 -2.75 16 6 C -0.16 -2.78 10.02 -39.54 -0.40 -3.18 16 7 C 0.08 1.50 7.29 -39.42 -0.29 1.21 16 8 F -0.15 -2.72 17.26 2.25 0.04 -2.68 16 9 C -0.15 -3.19 6.09 -39.54 -0.24 -3.43 16 10 C 0.01 0.30 2.64 -104.43 -0.28 0.03 16 11 C 0.06 1.41 1.25 -156.82 -0.20 1.22 16 12 C -0.45 -11.90 8.52 -34.45 -0.29 -12.19 16 13 H 0.08 2.27 8.06 -52.48 -0.42 1.85 16 14 C 0.09 2.59 4.40 -17.82 -0.08 2.51 16 15 N -0.89 -25.43 13.78 55.43 0.76 -24.67 16 16 Si 0.84 21.38 23.40 -169.99 -3.98 17.40 16 17 H -0.27 -6.88 6.75 56.52 0.38 -6.50 16 18 H -0.30 -7.82 7.11 56.52 0.40 -7.42 16 19 H -0.25 -6.26 5.65 56.52 0.32 -5.94 16 20 C -0.22 -4.51 9.47 -26.70 -0.25 -4.76 16 21 C -0.17 -3.42 9.94 -26.70 -0.27 -3.69 16 22 H 0.01 0.15 6.81 -51.93 -0.35 -0.20 16 23 H 0.07 1.19 8.06 -51.93 -0.42 0.77 16 24 H 0.08 1.89 7.06 -51.93 -0.37 1.52 16 25 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 26 H 0.07 0.98 8.05 -51.93 -0.42 0.56 16 27 H 0.02 0.22 7.59 -51.93 -0.39 -0.17 16 28 H 0.12 1.92 6.99 -52.49 -0.37 1.55 16 29 H 0.13 1.82 8.06 -52.48 -0.42 1.40 16 30 H 0.14 2.73 6.21 -52.49 -0.33 2.40 16 31 H 0.26 7.19 8.32 -40.82 -0.34 6.85 16 32 H 0.07 1.29 6.69 -51.93 -0.35 0.94 16 33 H 0.09 1.81 8.14 -51.93 -0.42 1.39 16 34 H 0.09 1.70 8.14 -51.93 -0.42 1.28 16 35 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 LS Contribution 282.48 15.07 4.26 4.26 Total: -1.00 -28.48 282.48 -6.14 -34.62 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -4.76 Total: 1.75 kcal Atomic # 6 Polarization: -18.93 SS G_CDS: -1.79 Total: -20.72 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.10 Total: -34.63 kcal Atomic # 9 Polarization: -2.72 SS G_CDS: 0.04 Total: -2.68 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -3.98 Total: 17.40 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.48 -6.14 -34.62 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.171 kcal (2) G-P(sol) polarization free energy of solvation -28.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds