Wall clock time and date at job start Mon Mar 30 2020 07:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 110.99850 * 2 1 4 4 C 1.39826 * 110.99629 * 123.95330 * 2 1 3 5 5 C 1.38898 * 120.04651 * 305.48748 * 4 2 1 6 6 C 1.38103 * 119.94665 * 180.23258 * 5 4 2 7 7 C 1.38482 * 120.05111 * 359.79301 * 6 5 4 8 8 F 1.35095 * 119.95389 * 179.97438 * 7 6 5 9 9 C 1.38443 * 120.09783 * 0.02562 * 7 6 5 10 10 C 1.38145 * 120.05123 * 359.97438 * 9 7 6 11 11 C 1.50697 * 120.02939 * 179.97438 * 10 9 7 12 12 C 1.50691 * 115.55294 * 123.02527 * 11 10 9 13 13 H 1.08003 * 120.00335 * 146.55940 * 12 11 10 14 14 C 1.37874 * 120.00225 * 326.56716 * 12 11 10 15 15 N 1.31519 * 120.00467 * 162.96052 * 14 12 11 16 16 Si 1.86805 * 120.00015 * 342.95971 * 14 12 11 17 17 H 1.48499 * 109.46969 * 93.11600 * 16 14 12 18 18 H 1.48496 * 109.47070 * 213.11881 * 16 14 12 19 19 H 1.48506 * 109.46933 * 333.12100 * 16 14 12 20 20 C 1.53001 * 117.49439 * 337.35783 * 11 10 9 21 21 C 1.52999 * 117.49739 * 268.70495 * 11 10 9 22 22 H 1.08993 * 109.47358 * 294.79667 * 1 2 3 23 23 H 1.09007 * 109.46753 * 54.79351 * 1 2 3 24 24 H 1.09001 * 109.47403 * 174.78861 * 1 2 3 25 25 H 1.09007 * 109.46909 * 187.31200 * 3 2 1 26 26 H 1.08994 * 109.47485 * 307.31451 * 3 2 1 27 27 H 1.09006 * 109.47232 * 67.31679 * 3 2 1 28 28 H 1.07997 * 120.02909 * 359.97438 * 5 4 2 29 29 H 1.08005 * 119.97095 * 179.77207 * 6 5 4 30 30 H 1.08000 * 119.97654 * 180.02562 * 9 7 6 31 31 H 0.97000 * 120.00190 * 184.99364 * 15 14 12 32 32 H 1.09001 * 117.50562 * 0.02562 * 20 11 10 33 33 H 1.09004 * 117.49928 * 145.02276 * 20 11 10 34 34 H 1.09004 * 117.49788 * 214.98061 * 21 11 10 35 35 H 1.09002 * 117.50117 * 359.96809 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9700 -0.7291 1.0828 5 6 1.5676 -0.4194 2.3757 6 6 2.0674 -1.1377 3.4440 7 6 2.9659 -2.1689 3.2268 8 9 3.4540 -2.8699 4.2734 9 6 3.3654 -2.4817 1.9388 10 6 2.8681 -1.7659 0.8670 11 6 3.3038 -2.1065 -0.5348 12 6 2.1943 -2.4494 -1.4951 13 1 2.2829 -2.1864 -2.5388 14 6 1.0659 -3.0988 -1.0413 15 7 -0.0281 -3.1042 -1.7713 16 14 1.0909 -3.9712 0.6103 17 1 0.6009 -3.0480 1.6652 18 1 0.2125 -5.1670 0.5518 19 1 2.4795 -4.3920 0.9269 20 6 4.6350 -2.8420 -0.7016 21 6 4.5204 -1.3674 -1.0956 22 1 -0.3634 0.4310 0.9328 23 1 -0.3633 0.5925 -0.8398 24 1 -0.3634 -1.0234 -0.0933 25 1 3.0773 1.3453 -0.1308 26 1 1.5441 1.9339 -0.8173 27 1 1.7556 1.8527 0.9482 28 1 0.8676 0.3853 2.5456 29 1 1.7576 -0.8948 4.4498 30 1 4.0659 -3.2866 1.7716 31 1 -0.8426 -3.4979 -1.4214 32 1 5.1955 -3.0799 0.2025 33 1 4.7084 -3.5736 -1.5063 34 1 4.5184 -1.1293 -2.1593 35 1 5.0053 -0.6344 -0.4508 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272016.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:50 Heat of formation + Delta-G solvation = 17.260624 kcal Electronic energy + Delta-G solvation = -19223.743200 eV Core-core repulsion = 16330.321363 eV Total energy + Delta-G solvation = -2893.421837 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.92000 -41.22363 -38.06069 -36.97557 -34.16907 -31.80995 -30.41920 -28.32761 -27.78800 -25.35142 -24.34120 -23.11406 -21.88820 -20.95991 -19.20428 -17.67803 -17.46315 -17.38255 -16.96753 -16.39041 -15.68800 -15.55044 -15.39179 -15.03749 -14.67104 -14.28993 -14.17621 -13.84570 -13.58389 -13.12583 -13.03388 -12.67804 -12.48556 -12.38141 -12.23110 -11.99744 -11.88715 -11.43754 -11.09877 -10.91223 -10.23429 -9.71886 -9.39387 -8.97763 -8.15319 -6.02213 0.11470 0.22008 1.31526 1.40781 1.46081 2.39609 2.54681 2.96186 3.09445 3.26263 3.61520 3.76563 3.90535 4.11032 4.23738 4.40194 4.43226 4.47694 4.67725 4.70266 4.72992 4.74441 4.80480 4.94348 5.06796 5.07109 5.10147 5.16036 5.21858 5.30796 5.54188 5.64704 5.81026 5.86540 6.27495 6.47322 6.64835 6.86610 7.51558 8.97204 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017064 B = 0.013371 C = 0.011972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.466783 B = 2093.554710 C = 2338.155915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.498 5.498 3 C 0.036 3.964 4 C 0.100 3.900 5 C -0.132 4.132 6 C -0.147 4.147 7 C 0.070 3.930 8 F -0.144 7.144 9 C -0.167 4.167 10 C -0.010 4.010 11 C 0.037 3.963 12 C -0.439 4.439 13 H 0.037 0.963 14 C 0.063 3.937 15 N -0.926 5.926 16 Si 0.887 3.113 17 H -0.268 1.268 18 H -0.316 1.316 19 H -0.244 1.244 20 C -0.210 4.210 21 C -0.153 4.153 22 H 0.037 0.963 23 H 0.072 0.928 24 H 0.043 0.957 25 H 0.064 0.936 26 H 0.078 0.922 27 H 0.039 0.961 28 H 0.153 0.847 29 H 0.162 0.838 30 H 0.136 0.864 31 H 0.259 0.741 32 H 0.089 0.911 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.132 7.707 9.554 12.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 N -0.218 5.218 3 C -0.110 4.110 4 C 0.005 3.995 5 C -0.152 4.152 6 C -0.166 4.166 7 C 0.051 3.949 8 F -0.123 7.123 9 C -0.186 4.186 10 C -0.012 4.012 11 C 0.036 3.964 12 C -0.477 4.477 13 H 0.055 0.945 14 C -0.135 4.135 15 N -0.566 5.566 16 Si 0.715 3.285 17 H -0.193 1.193 18 H -0.245 1.245 19 H -0.168 1.168 20 C -0.248 4.248 21 C -0.190 4.190 22 H 0.056 0.944 23 H 0.091 0.909 24 H 0.062 0.938 25 H 0.082 0.918 26 H 0.097 0.903 27 H 0.057 0.943 28 H 0.170 0.830 29 H 0.180 0.820 30 H 0.154 0.846 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 4.139 7.371 9.083 12.408 hybrid contribution -0.576 -0.654 1.210 1.491 sum 3.563 6.717 10.293 12.797 Atomic orbital electron populations 1.22283 0.86141 1.01784 1.00169 1.59258 1.08162 1.13926 1.40442 1.22430 1.00827 0.86674 1.01065 1.18806 0.96144 0.95259 0.89289 1.21752 1.00761 1.00808 0.91925 1.21172 0.98183 0.95816 1.01444 1.17727 0.99027 0.94774 0.83409 1.91442 1.86809 1.77946 1.56119 1.21187 1.03777 1.02521 0.91104 1.19306 0.94955 0.92824 0.94070 1.17792 0.88093 1.00852 0.89620 1.20021 1.00101 1.34160 0.93387 0.94455 1.25085 0.94755 0.95878 0.97824 1.70013 1.00669 1.46656 1.39224 0.86815 0.79079 0.78895 0.83669 1.19347 1.24517 1.16765 1.23285 1.04028 0.95014 1.02435 1.22712 1.02080 0.93897 1.00348 0.94440 0.90887 0.93787 0.91765 0.90317 0.94303 0.82965 0.82050 0.84623 0.93164 0.89312 0.90137 0.90136 0.89128 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.31 127.69 1.19 2.79 16 2 N -0.50 -18.95 3.57 -745.00 -2.66 -21.60 16 3 C 0.04 1.05 9.50 127.69 1.21 2.26 16 4 C 0.10 3.82 3.54 38.17 0.14 3.96 16 5 C -0.13 -4.25 8.53 22.40 0.19 -4.06 16 6 C -0.15 -4.52 10.02 22.30 0.22 -4.30 16 7 C 0.07 2.45 7.29 22.38 0.16 2.61 16 8 F -0.14 -4.84 17.26 44.97 0.78 -4.06 16 9 C -0.17 -6.49 6.09 22.30 0.14 -6.35 16 10 C -0.01 -0.43 2.64 -19.74 -0.05 -0.48 16 11 C 0.04 1.68 1.25 -53.68 -0.07 1.61 16 12 C -0.44 -23.85 8.52 25.60 0.22 -23.63 16 13 H 0.04 2.27 8.06 -2.91 -0.02 2.25 16 14 C 0.06 3.53 4.40 84.65 0.37 3.90 16 15 N -0.93 -54.87 13.78 21.45 0.30 -54.58 16 16 Si 0.89 44.48 23.40 68.60 1.61 46.08 16 17 H -0.27 -13.03 6.75 99.48 0.67 -12.36 16 18 H -0.32 -16.52 7.11 99.48 0.71 -15.81 16 19 H -0.24 -11.64 5.65 99.48 0.56 -11.08 16 20 C -0.21 -8.38 9.47 30.62 0.29 -8.09 16 21 C -0.15 -5.93 9.94 30.62 0.30 -5.63 16 22 H 0.04 1.14 6.81 -2.39 -0.02 1.12 16 23 H 0.07 2.53 8.06 -2.38 -0.02 2.51 16 24 H 0.04 1.98 7.06 -2.39 -0.02 1.96 16 25 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 26 H 0.08 2.08 8.05 -2.39 -0.02 2.06 16 27 H 0.04 0.95 7.59 -2.38 -0.02 0.93 16 28 H 0.15 3.95 6.99 -2.91 -0.02 3.92 16 29 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 30 H 0.14 5.14 6.21 -2.91 -0.02 5.13 16 31 H 0.26 14.77 8.32 -92.71 -0.77 14.00 16 32 H 0.09 3.16 6.69 -2.39 -0.02 3.15 16 33 H 0.08 3.29 8.14 -2.38 -0.02 3.27 16 34 H 0.08 3.16 8.14 -2.38 -0.02 3.15 16 35 H 0.09 3.10 8.14 -2.39 -0.02 3.08 16 Total: -1.00 -61.91 282.48 5.24 -56.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: 0.90 Total: 12.88 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 4.32 Total: -35.39 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -2.36 Total: -76.18 kcal Atomic # 9 Polarization: -4.84 SS G_CDS: 0.78 Total: -4.06 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 1.61 Total: 46.08 kcal Total: -61.91 5.24 -56.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272016.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.934 kcal (2) G-P(sol) polarization free energy of solvation -61.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.673 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.261 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds