Wall clock time and date at job start Mon Mar 30 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47404 * 2 1 4 4 H 1.07997 * 119.99985 * 26.25979 * 3 2 1 5 5 C 1.37878 * 120.00130 * 206.25500 * 3 2 1 6 6 N 1.31520 * 119.99822 * 163.98260 * 5 3 2 7 7 Si 1.86799 * 119.99926 * 343.99113 * 5 3 2 8 8 H 1.48505 * 109.46923 * 87.23362 * 7 5 3 9 9 H 1.48501 * 109.47122 * 207.23130 * 7 5 3 10 10 H 1.48499 * 109.47228 * 327.23316 * 7 5 3 11 11 N 1.46897 * 109.47100 * 239.99957 * 2 1 3 12 12 C 1.46899 * 110.99918 * 59.22009 * 11 2 1 13 13 C 1.52999 * 117.50273 * 231.51867 * 12 11 2 14 14 C 1.53004 * 117.49882 * 162.85849 * 12 11 2 15 15 C 1.50707 * 109.47068 * 120.00428 * 2 1 3 16 16 C 1.38244 * 119.97530 * 102.06979 * 15 2 1 17 17 C 1.38199 * 120.02136 * 179.76644 * 16 15 2 18 18 C 1.38456 * 119.97688 * 0.50821 * 17 16 15 19 19 F 1.35097 * 120.02618 * 179.76587 * 18 17 16 20 20 C 1.38462 * 119.94831 * 359.74600 * 18 17 16 21 21 C 1.38201 * 119.97270 * 0.02562 * 20 18 17 22 22 H 1.09003 * 109.47204 * 59.99584 * 1 2 3 23 23 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46682 * 300.00345 * 1 2 3 25 25 H 0.96996 * 119.99355 * 180.02562 * 6 5 3 26 26 H 1.00910 * 111.00233 * 295.27277 * 11 2 1 27 27 H 1.09002 * 115.54869 * 17.19085 * 12 11 2 28 28 H 1.09001 * 117.49587 * 0.02562 * 13 12 11 29 29 H 1.09001 * 117.50224 * 145.02234 * 13 12 11 30 30 H 1.09003 * 117.49623 * 214.98057 * 14 12 11 31 31 H 1.09002 * 117.50083 * 0.02562 * 14 12 11 32 32 H 1.08004 * 119.98701 * 0.02562 * 16 15 2 33 33 H 1.08003 * 120.01082 * 180.25672 * 17 16 15 34 34 H 1.07997 * 120.01098 * 179.97438 * 20 18 17 35 35 H 1.08004 * 119.98646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 1 1.4216 2.2095 0.4138 5 6 3.2718 1.7137 -0.5282 6 7 3.5851 2.9573 -0.8198 7 14 4.5060 0.3443 -0.8298 8 1 4.2797 -0.2381 -2.1771 9 1 5.8835 0.8936 -0.7530 10 1 4.3358 -0.7113 0.2007 11 7 2.0197 -0.6925 -1.1994 12 6 1.5335 -0.0372 -2.4209 13 6 0.8479 -0.9160 -3.4691 14 6 2.2514 -0.3645 -3.7318 15 6 2.0324 -0.7105 1.2305 16 6 2.4987 -2.0086 1.1365 17 6 2.9640 -2.6593 2.2634 18 6 2.9533 -2.0146 3.4886 19 9 3.4036 -2.6515 4.5916 20 6 2.4811 -0.7163 3.5824 21 6 2.0206 -0.0659 2.4533 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.4569 3.1633 -1.1918 26 1 1.7610 -1.6678 -1.1849 27 1 1.1585 0.9782 -2.2924 28 1 0.7573 -1.9803 -3.2521 29 1 0.0222 -0.4787 -4.0304 30 1 2.3484 0.4356 -4.4658 31 1 3.0843 -1.0663 -3.6879 32 1 2.5032 -2.5127 0.1814 33 1 3.3322 -3.6720 2.1890 34 1 2.4719 -0.2126 4.5376 35 1 1.6527 0.9469 2.5262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:48 Heat of formation + Delta-G solvation = 15.753865 kcal Electronic energy + Delta-G solvation = -18676.489988 eV Core-core repulsion = 15783.002812 eV Total energy + Delta-G solvation = -2893.487175 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -48.41972 -39.18338 -37.26938 -34.53715 -31.93063 -30.63321 -29.27820 -27.83096 -25.45562 -22.70820 -22.16723 -21.87093 -20.48324 -19.22888 -17.23949 -16.81019 -15.80591 -15.52756 -15.13447 -15.01392 -14.31048 -14.11755 -13.33379 -13.05662 -12.99338 -12.71926 -12.33278 -12.29179 -11.98584 -11.68637 -11.53564 -11.17237 -10.82671 -10.52729 -10.44667 -10.23886 -9.95856 -9.69258 -9.55294 -9.34756 -8.50960 -8.28337 -7.85057 -7.27447 -6.07138 -4.15390 1.80824 1.86225 3.71958 3.72693 3.86700 4.24645 4.45773 4.71898 4.79060 4.85126 5.19709 5.30485 5.36533 5.51646 5.58242 5.75907 5.79368 6.00390 6.01706 6.05175 6.15610 6.29159 6.36567 6.45504 6.47057 6.59077 6.64277 6.71213 6.79710 6.88394 7.05865 7.18458 7.44447 7.63659 7.80993 8.17525 8.48678 8.88635 9.59155 10.99040 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.009130 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.530232 B = 3066.228096 C = 3366.313027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.243 3.757 3 C -0.528 4.528 4 H 0.075 0.925 5 C 0.095 3.905 6 N -0.888 5.888 7 Si 0.929 3.071 8 H -0.270 1.270 9 H -0.341 1.341 10 H -0.265 1.265 11 N -0.644 5.644 12 C 0.065 3.935 13 C -0.227 4.227 14 C -0.181 4.181 15 C -0.043 4.043 16 C -0.097 4.097 17 C -0.162 4.162 18 C 0.066 3.934 19 F -0.154 7.154 20 C -0.161 4.161 21 C -0.066 4.066 22 H 0.057 0.943 23 H 0.030 0.970 24 H 0.052 0.948 25 H 0.263 0.737 26 H 0.321 0.679 27 H 0.132 0.868 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.123 0.877 33 H 0.121 0.879 34 H 0.125 0.875 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.434 -8.816 1.014 9.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.153 3.847 3 C -0.565 4.565 4 H 0.093 0.907 5 C -0.111 4.111 6 N -0.523 5.523 7 Si 0.764 3.236 8 H -0.196 1.196 9 H -0.274 1.274 10 H -0.190 1.190 11 N -0.275 5.275 12 C -0.046 4.046 13 C -0.266 4.266 14 C -0.219 4.219 15 C -0.045 4.045 16 C -0.115 4.115 17 C -0.180 4.180 18 C 0.047 3.953 19 F -0.133 7.133 20 C -0.180 4.180 21 C -0.084 4.084 22 H 0.076 0.924 23 H 0.049 0.951 24 H 0.071 0.929 25 H 0.072 0.928 26 H 0.141 0.859 27 H 0.149 0.851 28 H 0.102 0.898 29 H 0.104 0.896 30 H 0.106 0.894 31 H 0.108 0.892 32 H 0.141 0.859 33 H 0.139 0.861 34 H 0.143 0.857 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -3.714 -8.383 1.004 9.224 hybrid contribution 0.171 -1.020 -0.037 1.035 sum -3.543 -9.403 0.967 10.095 Atomic orbital electron populations 1.22372 0.97741 0.99063 1.01895 1.17970 0.89907 0.93768 0.83020 1.20506 1.03572 0.89070 1.43306 0.90675 1.24992 0.98331 0.95746 0.92079 1.70025 1.21931 1.19791 1.40524 0.85937 0.75382 0.81566 0.80710 1.19587 1.27423 1.18980 1.60163 1.60408 1.04817 1.02099 1.22286 0.98829 0.98674 0.84795 1.23480 0.96304 0.99446 1.07359 1.23058 0.94410 1.03384 1.01093 1.20649 0.95547 0.91999 0.96274 1.20883 0.98645 0.94844 0.97168 1.20942 1.04591 1.00650 0.91867 1.17626 1.02700 0.92267 0.82743 1.91415 1.87499 1.82117 1.52286 1.21078 1.03195 0.93532 1.00168 1.20901 0.97040 0.99816 0.90659 0.92448 0.95090 0.92938 0.92770 0.85873 0.85085 0.89812 0.89584 0.89417 0.89236 0.85893 0.86067 0.85709 0.84500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.28 37.16 0.31 -2.41 16 2 C 0.24 4.93 0.40 -133.91 -0.05 4.88 16 3 C -0.53 -13.15 6.30 -34.44 -0.22 -13.37 16 4 H 0.08 2.05 8.06 -52.49 -0.42 1.63 16 5 C 0.09 2.55 4.95 -17.82 -0.09 2.46 16 6 N -0.89 -25.86 13.96 55.43 0.77 -25.08 16 7 Si 0.93 22.99 24.26 -169.99 -4.12 18.87 16 8 H -0.27 -6.38 5.07 56.52 0.29 -6.09 16 9 H -0.34 -9.17 7.11 56.52 0.40 -8.77 16 10 H -0.26 -6.37 4.81 56.52 0.27 -6.09 16 11 N -0.64 -12.42 2.29 -95.38 -0.22 -12.64 16 12 C 0.06 1.21 3.55 -67.71 -0.24 0.97 16 13 C -0.23 -3.44 10.22 -26.69 -0.27 -3.72 16 14 C -0.18 -3.16 9.44 -26.69 -0.25 -3.41 16 15 C -0.04 -0.85 3.35 -104.61 -0.35 -1.20 16 16 C -0.10 -1.75 7.68 -39.59 -0.30 -2.06 16 17 C -0.16 -2.78 10.03 -39.52 -0.40 -3.17 16 18 C 0.07 1.16 7.30 -39.42 -0.29 0.88 16 19 F -0.15 -2.66 17.27 2.25 0.04 -2.62 16 20 C -0.16 -2.83 10.03 -39.51 -0.40 -3.22 16 21 C -0.07 -1.26 9.13 -39.59 -0.36 -1.62 16 22 H 0.06 1.03 6.84 -51.93 -0.36 0.68 16 23 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 25 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 26 H 0.32 5.44 6.55 -39.29 -0.26 5.18 16 27 H 0.13 2.80 6.56 -51.93 -0.34 2.46 16 28 H 0.08 1.16 8.06 -51.93 -0.42 0.75 16 29 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 30 H 0.09 1.47 8.14 -51.93 -0.42 1.05 16 31 H 0.09 1.60 7.42 -51.93 -0.39 1.22 16 32 H 0.12 2.03 6.12 -52.48 -0.32 1.70 16 33 H 0.12 1.78 8.06 -52.48 -0.42 1.36 16 34 H 0.12 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.14 2.63 7.47 -52.48 -0.39 2.24 16 LS Contribution 279.49 15.07 4.21 4.21 Total: -1.00 -28.02 279.49 -7.04 -35.06 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: -4.81 Total: 7.20 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: -2.91 Total: -25.00 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.55 Total: -37.73 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.04 Total: -2.62 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -4.12 Total: 18.87 kcal Total LS contribution 4.21 Total: 4.21 kcal Total: -28.02 -7.04 -35.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.810 kcal (2) G-P(sol) polarization free energy of solvation -28.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds