Wall clock time and date at job start Mon Mar 30 2020 06:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50695 * 109.47404 * 2 1 4 4 H 1.07997 * 119.99985 * 26.25979 * 3 2 1 5 5 C 1.37878 * 120.00130 * 206.25500 * 3 2 1 6 6 N 1.31520 * 119.99822 * 163.98260 * 5 3 2 7 7 Si 1.86799 * 119.99926 * 343.99113 * 5 3 2 8 8 H 1.48505 * 109.46923 * 87.23362 * 7 5 3 9 9 H 1.48501 * 109.47122 * 207.23130 * 7 5 3 10 10 H 1.48499 * 109.47228 * 327.23316 * 7 5 3 11 11 N 1.46897 * 109.47100 * 239.99957 * 2 1 3 12 12 C 1.46899 * 110.99918 * 59.22009 * 11 2 1 13 13 C 1.52999 * 117.50273 * 231.51867 * 12 11 2 14 14 C 1.53004 * 117.49882 * 162.85849 * 12 11 2 15 15 C 1.50707 * 109.47068 * 120.00428 * 2 1 3 16 16 C 1.38244 * 119.97530 * 102.06979 * 15 2 1 17 17 C 1.38199 * 120.02136 * 179.76644 * 16 15 2 18 18 C 1.38456 * 119.97688 * 0.50821 * 17 16 15 19 19 F 1.35097 * 120.02618 * 179.76587 * 18 17 16 20 20 C 1.38462 * 119.94831 * 359.74600 * 18 17 16 21 21 C 1.38201 * 119.97270 * 0.02562 * 20 18 17 22 22 H 1.09003 * 109.47204 * 59.99584 * 1 2 3 23 23 H 1.08997 * 109.47242 * 180.02562 * 1 2 3 24 24 H 1.09003 * 109.46682 * 300.00345 * 1 2 3 25 25 H 0.96996 * 119.99355 * 180.02562 * 6 5 3 26 26 H 1.00910 * 111.00233 * 295.27277 * 11 2 1 27 27 H 1.09002 * 115.54869 * 17.19085 * 12 11 2 28 28 H 1.09001 * 117.49587 * 0.02562 * 13 12 11 29 29 H 1.09001 * 117.50224 * 145.02234 * 13 12 11 30 30 H 1.09003 * 117.49623 * 214.98057 * 14 12 11 31 31 H 1.09002 * 117.50083 * 0.02562 * 14 12 11 32 32 H 1.08004 * 119.98701 * 0.02562 * 16 15 2 33 33 H 1.08003 * 120.01082 * 180.25672 * 17 16 15 34 34 H 1.07997 * 120.01098 * 179.97438 * 20 18 17 35 35 H 1.08004 * 119.98646 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 1 1.4216 2.2095 0.4138 5 6 3.2718 1.7137 -0.5282 6 7 3.5851 2.9573 -0.8198 7 14 4.5060 0.3443 -0.8298 8 1 4.2797 -0.2381 -2.1771 9 1 5.8835 0.8936 -0.7530 10 1 4.3358 -0.7113 0.2007 11 7 2.0197 -0.6925 -1.1994 12 6 1.5335 -0.0372 -2.4209 13 6 0.8479 -0.9160 -3.4691 14 6 2.2514 -0.3645 -3.7318 15 6 2.0324 -0.7105 1.2305 16 6 2.4987 -2.0086 1.1365 17 6 2.9640 -2.6593 2.2634 18 6 2.9533 -2.0146 3.4886 19 9 3.4036 -2.6515 4.5916 20 6 2.4811 -0.7163 3.5824 21 6 2.0206 -0.0659 2.4533 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8900 25 1 4.4569 3.1633 -1.1918 26 1 1.7610 -1.6678 -1.1849 27 1 1.1585 0.9782 -2.2924 28 1 0.7573 -1.9803 -3.2521 29 1 0.0222 -0.4787 -4.0304 30 1 2.3484 0.4356 -4.4658 31 1 3.0843 -1.0663 -3.6879 32 1 2.5032 -2.5127 0.1814 33 1 3.3322 -3.6720 2.1890 34 1 2.4719 -0.2126 4.5376 35 1 1.6527 0.9469 2.5262 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272434.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:48 Heat of formation + Delta-G solvation = 0.031404 kcal Electronic energy + Delta-G solvation = -18677.171765 eV Core-core repulsion = 15783.002812 eV Total energy + Delta-G solvation = -2894.168952 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.78053 -40.67349 -38.68726 -36.05663 -33.91898 -32.04717 -30.71547 -29.32692 -27.35392 -24.17257 -23.62353 -23.15140 -21.91745 -20.89437 -18.73993 -18.54507 -17.25894 -17.07127 -16.57471 -16.46553 -16.03348 -15.53850 -14.88704 -14.63792 -14.33774 -14.28249 -14.02466 -13.77198 -13.61760 -13.12487 -13.08113 -12.64079 -12.24023 -12.18382 -12.07729 -11.85825 -11.75570 -11.31779 -11.16915 -10.98333 -10.36671 -9.84406 -9.31377 -8.80973 -8.16272 -6.23164 0.37863 0.45959 1.69955 1.75259 1.86618 2.69668 2.82366 3.08774 3.21916 3.35939 3.42874 3.95734 4.07843 4.19670 4.20907 4.30211 4.40423 4.59930 4.63535 4.71191 4.77512 4.84982 4.95761 5.07073 5.09615 5.19820 5.28727 5.32815 5.35026 5.41686 5.55453 5.58119 5.90779 6.03798 6.15658 6.51816 6.68350 6.94355 7.53459 8.92840 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023337 B = 0.009130 C = 0.008316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.530232 B = 3066.228096 C = 3366.313027 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.246 3.754 3 C -0.507 4.507 4 H 0.037 0.963 5 C 0.050 3.950 6 N -0.941 5.941 7 Si 0.977 3.023 8 H -0.253 1.253 9 H -0.375 1.375 10 H -0.249 1.249 11 N -0.648 5.648 12 C 0.037 3.963 13 C -0.184 4.184 14 C -0.190 4.190 15 C -0.062 4.062 16 C -0.099 4.099 17 C -0.156 4.156 18 C 0.061 3.939 19 F -0.150 7.150 20 C -0.160 4.160 21 C -0.084 4.084 22 H 0.051 0.949 23 H 0.058 0.942 24 H 0.046 0.954 25 H 0.257 0.743 26 H 0.340 0.660 27 H 0.096 0.904 28 H 0.108 0.892 29 H 0.102 0.898 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.144 0.856 33 H 0.152 0.848 34 H 0.144 0.856 35 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.086 -12.210 0.844 13.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.156 3.844 3 C -0.544 4.544 4 H 0.055 0.945 5 C -0.151 4.151 6 N -0.579 5.579 7 Si 0.813 3.187 8 H -0.178 1.178 9 H -0.312 1.312 10 H -0.174 1.174 11 N -0.280 5.280 12 C -0.074 4.074 13 C -0.223 4.223 14 C -0.228 4.228 15 C -0.063 4.063 16 C -0.117 4.117 17 C -0.175 4.175 18 C 0.042 3.958 19 F -0.129 7.129 20 C -0.178 4.178 21 C -0.102 4.102 22 H 0.070 0.930 23 H 0.077 0.923 24 H 0.065 0.935 25 H 0.065 0.935 26 H 0.162 0.838 27 H 0.114 0.886 28 H 0.126 0.874 29 H 0.120 0.880 30 H 0.104 0.896 31 H 0.107 0.893 32 H 0.161 0.839 33 H 0.169 0.831 34 H 0.162 0.838 35 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.409 -11.819 0.834 12.642 hybrid contribution 0.273 0.042 0.094 0.292 sum -4.136 -11.777 0.929 12.516 Atomic orbital electron populations 1.22250 0.95999 1.00664 1.01413 1.17767 0.91231 0.91269 0.84108 1.20681 1.02133 0.91107 1.40526 0.94489 1.25599 1.00015 0.96798 0.92649 1.70159 1.22087 1.21846 1.43846 0.85164 0.71901 0.79834 0.81838 1.17786 1.31182 1.17355 1.59882 1.60645 1.05830 1.01674 1.22080 1.01645 0.98208 0.85448 1.23511 0.95170 1.00056 1.03578 1.23102 0.96059 1.03705 0.99968 1.20541 0.96858 0.93231 0.95677 1.21069 0.98019 0.94120 0.98467 1.21262 1.03310 1.01851 0.91050 1.17775 1.02476 0.92284 0.83262 1.91430 1.87390 1.81953 1.52143 1.21246 1.02327 0.93782 1.00488 1.20891 0.98227 0.99605 0.91515 0.92992 0.92302 0.93469 0.93495 0.83791 0.88585 0.87354 0.87993 0.89557 0.89337 0.83863 0.83060 0.83813 0.85881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.98 8.28 71.98 0.60 -4.38 16 2 C 0.25 9.74 0.40 2.04 0.00 9.74 16 3 C -0.51 -25.94 6.30 25.60 0.16 -25.78 16 4 H 0.04 2.13 8.06 -2.91 -0.02 2.11 16 5 C 0.05 2.74 4.95 84.65 0.42 3.15 16 6 N -0.94 -57.39 13.96 21.45 0.30 -57.09 16 7 Si 0.98 47.64 24.26 68.60 1.66 49.31 16 8 H -0.25 -11.42 5.07 99.48 0.50 -10.92 16 9 H -0.38 -20.41 7.11 99.48 0.71 -19.71 16 10 H -0.25 -11.33 4.81 99.48 0.48 -10.85 16 11 N -0.65 -23.42 2.29 -455.68 -1.05 -24.47 16 12 C 0.04 1.31 3.55 44.92 0.16 1.47 16 13 C -0.18 -4.89 10.22 30.62 0.31 -4.58 16 14 C -0.19 -6.19 9.44 30.62 0.29 -5.90 16 15 C -0.06 -2.32 3.35 -19.86 -0.07 -2.38 16 16 C -0.10 -3.20 7.68 22.26 0.17 -3.03 16 17 C -0.16 -4.72 10.03 22.31 0.22 -4.50 16 18 C 0.06 1.98 7.30 22.38 0.16 2.14 16 19 F -0.15 -4.70 17.27 44.97 0.78 -3.92 16 20 C -0.16 -5.31 10.03 22.31 0.22 -5.09 16 21 C -0.08 -3.15 9.13 22.26 0.20 -2.94 16 22 H 0.05 1.82 6.84 -2.39 -0.02 1.81 16 23 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 25 H 0.26 15.25 8.31 -92.71 -0.77 14.48 16 26 H 0.34 10.09 6.55 -89.69 -0.59 9.50 16 27 H 0.10 4.15 6.56 -2.39 -0.02 4.13 16 28 H 0.11 2.41 8.06 -2.39 -0.02 2.39 16 29 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 30 H 0.09 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.91 7.42 -2.39 -0.02 2.89 16 32 H 0.14 4.01 6.12 -2.91 -0.02 4.00 16 33 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 34 H 0.14 4.10 8.06 -2.91 -0.02 4.08 16 35 H 0.12 4.86 7.47 -2.91 -0.02 4.84 16 Total: -1.00 -62.02 279.49 4.63 -57.40 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: 0.07 Total: 20.85 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 2.86 Total: -42.07 kcal Atomic # 7 Polarization: -80.81 SS G_CDS: -0.75 Total: -81.56 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.78 Total: -3.92 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 1.66 Total: 49.31 kcal Total: -62.02 4.63 -57.40 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272434.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.428 kcal (2) G-P(sol) polarization free energy of solvation -62.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds