Wall clock time and date at job start Mon Mar 30 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47110 * 2 1 4 4 H 1.08000 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.37872 * 119.99991 * 179.97438 * 3 2 1 6 6 N 1.31511 * 120.00196 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99888 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47219 * 0.02562 * 7 5 3 9 9 H 1.48510 * 109.46801 * 120.00036 * 7 5 3 10 10 H 1.48494 * 109.47005 * 239.99580 * 7 5 3 11 11 N 1.46896 * 109.47032 * 119.99437 * 2 1 3 12 12 C 1.46900 * 111.00210 * 300.00299 * 11 2 1 13 13 C 1.53001 * 117.50221 * 223.74460 * 12 11 2 14 14 C 1.53001 * 117.50193 * 155.08507 * 12 11 2 15 15 C 1.50694 * 109.47244 * 239.99675 * 2 1 3 16 16 C 1.38250 * 119.97505 * 60.00359 * 15 2 1 17 17 C 1.38196 * 120.02428 * 180.27926 * 16 15 2 18 18 C 1.38457 * 119.97339 * 359.50816 * 17 16 15 19 19 F 1.35103 * 120.02364 * 180.21557 * 18 17 16 20 20 C 1.38456 * 119.94977 * 0.48564 * 18 17 16 21 21 C 1.38199 * 119.97506 * 359.75344 * 20 18 17 22 22 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47131 * 300.00494 * 1 2 3 24 24 H 1.09006 * 109.46774 * 60.00286 * 1 2 3 25 25 H 0.96997 * 120.00141 * 180.02562 * 6 5 3 26 26 H 1.00900 * 111.00569 * 176.04580 * 11 2 1 27 27 H 1.09000 * 115.55343 * 9.41842 * 12 11 2 28 28 H 1.09008 * 117.49372 * 359.97438 * 13 12 11 29 29 H 1.08996 * 117.50042 * 145.01745 * 13 12 11 30 30 H 1.08997 * 117.50226 * 214.97836 * 14 12 11 31 31 H 1.09007 * 117.49520 * 359.97400 * 14 12 11 32 32 H 1.08002 * 119.98396 * 359.97438 * 16 15 2 33 33 H 1.08004 * 120.00978 * 179.72210 * 17 16 15 34 34 H 1.07999 * 120.01335 * 179.72141 * 20 18 17 35 35 H 1.07999 * 119.98943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3306 2.2417 -0.0004 5 6 3.3879 1.6728 0.0005 6 7 4.2425 0.6732 0.0016 7 14 4.0105 3.4340 -0.0002 8 1 2.8555 4.3674 -0.0007 9 1 4.8350 3.6680 1.2127 10 1 4.8362 3.6666 -1.2123 11 7 2.0197 -0.6924 1.1995 12 6 1.5486 -0.0262 2.4211 13 6 2.5589 0.1703 3.5531 14 6 1.4462 -0.8716 3.6922 15 6 2.0324 -0.7104 -1.2304 16 6 1.6982 -0.2377 -2.4858 17 6 2.1535 -0.8918 -3.6148 18 6 2.9531 -2.0150 -3.4883 19 9 3.4025 -2.6527 -4.5913 20 6 3.2873 -2.4875 -2.2304 21 6 2.8267 -1.8347 -1.1028 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 5.1962 0.8505 0.0023 26 1 3.0262 -0.7625 1.1911 27 1 0.8007 0.7528 2.2732 28 1 3.5732 -0.1951 3.3915 29 1 2.4755 1.0784 4.1501 30 1 0.6313 -0.6485 4.3807 31 1 1.7280 -1.9222 3.6219 32 1 1.0769 0.6402 -2.5842 33 1 1.8886 -0.5249 -4.5954 34 1 3.9073 -3.3662 -2.1306 35 1 3.0869 -2.2032 -0.1216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260272440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:52 Heat of formation + Delta-G solvation = 6.078320 kcal Electronic energy + Delta-G solvation = -18588.610112 eV Core-core repulsion = 15694.703373 eV Total energy + Delta-G solvation = -2893.906738 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.14547 -38.68475 -36.81433 -34.37849 -31.68114 -30.31226 -28.81065 -27.62047 -25.24637 -22.47482 -21.85784 -21.58483 -20.15667 -19.07094 -16.88998 -16.67536 -15.59540 -15.15634 -14.86729 -14.76333 -14.45962 -13.83281 -13.22786 -12.95881 -12.64132 -12.53904 -11.98623 -11.76050 -11.52517 -11.37078 -11.06035 -10.95431 -10.84128 -10.72293 -10.45683 -10.36148 -10.04465 -9.69186 -9.42957 -9.17488 -8.73185 -8.13548 -7.46476 -7.07058 -6.10481 -4.31168 2.20113 2.24274 3.18536 3.28667 3.30435 4.28008 4.67045 4.73184 5.07818 5.12463 5.31025 5.64172 5.65313 5.77577 5.85692 6.03688 6.21843 6.28959 6.31410 6.37548 6.46327 6.54666 6.62437 6.71922 6.81724 6.83848 6.86288 7.02697 7.10608 7.12279 7.40594 7.66928 7.72531 7.89640 8.02405 8.47902 8.75350 8.89594 9.40525 10.82161 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.009442 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.091895 B = 2964.863808 C = 3704.672208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.259 3.741 3 C -0.539 4.539 4 H 0.059 0.941 5 C 0.078 3.922 6 N -0.880 5.880 7 Si 0.889 3.111 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.284 1.284 11 N -0.657 5.657 12 C 0.075 3.925 13 C -0.210 4.210 14 C -0.198 4.198 15 C -0.001 4.001 16 C -0.088 4.088 17 C -0.165 4.165 18 C 0.056 3.944 19 F -0.160 7.160 20 C -0.163 4.163 21 C -0.060 4.060 22 H 0.039 0.961 23 H 0.047 0.953 24 H 0.045 0.955 25 H 0.265 0.735 26 H 0.361 0.639 27 H 0.103 0.897 28 H 0.086 0.914 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.085 0.915 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.116 0.884 35 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.479 -2.728 0.308 4.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.169 3.831 3 C -0.578 4.578 4 H 0.078 0.922 5 C -0.126 4.126 6 N -0.517 5.517 7 Si 0.717 3.283 8 H -0.198 1.198 9 H -0.210 1.210 10 H -0.210 1.210 11 N -0.291 5.291 12 C -0.038 4.038 13 C -0.249 4.249 14 C -0.237 4.237 15 C -0.002 4.002 16 C -0.106 4.106 17 C -0.184 4.184 18 C 0.037 3.963 19 F -0.139 7.139 20 C -0.182 4.182 21 C -0.079 4.079 22 H 0.058 0.942 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.186 0.814 27 H 0.120 0.880 28 H 0.104 0.896 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.140 0.860 33 H 0.134 0.866 34 H 0.134 0.866 35 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -3.749 -3.273 0.235 4.983 hybrid contribution 1.434 1.787 -0.195 2.300 sum -2.315 -1.486 0.039 2.752 Atomic orbital electron populations 1.21830 0.96574 0.99576 1.00282 1.17451 0.90180 0.90762 0.84676 1.21612 0.91833 0.91732 1.52590 0.92233 1.24912 0.96887 0.96997 0.93794 1.69684 1.02458 1.30306 1.49250 0.86577 0.78931 0.85148 0.77643 1.19805 1.21015 1.20992 1.60770 1.18656 1.49640 1.00005 1.22015 0.99183 0.96684 0.85872 1.23199 0.95561 0.99960 1.06147 1.23123 1.00774 0.97012 1.02795 1.20085 0.93353 0.91707 0.95029 1.20695 0.99954 0.98683 0.91311 1.20863 1.01548 0.96585 0.99443 1.17575 1.01334 0.95073 0.82308 1.91383 1.88257 1.81604 1.52667 1.20970 1.03699 1.02039 0.91517 1.20786 0.95352 0.94405 0.97315 0.94209 0.93415 0.93575 0.92481 0.81356 0.87977 0.89566 0.90369 0.90258 0.89601 0.86043 0.86564 0.86606 0.85312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.42 8.11 37.16 0.30 -2.12 16 2 C 0.26 5.61 0.49 -133.91 -0.07 5.55 16 3 C -0.54 -12.89 6.70 -34.44 -0.23 -13.12 16 4 H 0.06 1.46 7.74 -52.49 -0.41 1.05 16 5 C 0.08 1.93 5.22 -17.82 -0.09 1.84 16 6 N -0.88 -22.00 10.21 55.43 0.57 -21.44 16 7 Si 0.89 20.07 29.54 -169.99 -5.02 15.04 16 8 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 11 N -0.66 -13.90 5.34 -95.38 -0.51 -14.41 16 12 C 0.07 1.46 5.01 -67.71 -0.34 1.12 16 13 C -0.21 -3.86 10.23 -26.69 -0.27 -4.13 16 14 C -0.20 -3.35 10.46 -26.69 -0.28 -3.62 16 15 C 0.00 -0.01 3.69 -104.62 -0.39 -0.40 16 16 C -0.09 -1.80 8.81 -39.59 -0.35 -2.15 16 17 C -0.17 -3.20 10.03 -39.52 -0.40 -3.60 16 18 C 0.06 1.11 7.30 -39.42 -0.29 0.82 16 19 F -0.16 -3.07 17.27 2.25 0.04 -3.03 16 20 C -0.16 -3.22 10.03 -39.52 -0.40 -3.62 16 21 C -0.06 -1.26 8.63 -39.59 -0.34 -1.61 16 22 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 23 H 0.05 0.89 6.31 -51.93 -0.33 0.56 16 24 H 0.05 0.84 7.39 -51.93 -0.38 0.46 16 25 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 26 H 0.36 8.28 5.34 -39.29 -0.21 8.07 16 27 H 0.10 2.06 6.03 -51.93 -0.31 1.75 16 28 H 0.09 1.67 8.09 -51.92 -0.42 1.25 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.09 1.44 8.14 -51.92 -0.42 1.01 16 32 H 0.12 2.37 7.57 -52.49 -0.40 1.98 16 33 H 0.12 1.96 8.06 -52.48 -0.42 1.53 16 34 H 0.12 2.02 8.06 -52.49 -0.42 1.60 16 35 H 0.13 2.70 6.40 -52.49 -0.34 2.36 16 LS Contribution 290.26 15.07 4.37 4.37 Total: -1.00 -24.48 290.26 -8.15 -32.64 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.47 Total: 11.86 kcal Atomic # 6 Polarization: -21.90 SS G_CDS: -3.14 Total: -25.04 kcal Atomic # 7 Polarization: -35.90 SS G_CDS: 0.06 Total: -35.85 kcal Atomic # 9 Polarization: -3.07 SS G_CDS: 0.04 Total: -3.03 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -24.48 -8.15 -32.64 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.714 kcal (2) G-P(sol) polarization free energy of solvation -24.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds