Wall clock time and date at job start Mon Mar 30 2020 06:38:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50704 * 109.47110 * 2 1 4 4 H 1.08000 * 120.00017 * 359.97438 * 3 2 1 5 5 C 1.37872 * 119.99991 * 179.97438 * 3 2 1 6 6 N 1.31511 * 120.00196 * 359.97438 * 5 3 2 7 7 Si 1.86804 * 119.99888 * 179.97438 * 5 3 2 8 8 H 1.48500 * 109.47219 * 0.02562 * 7 5 3 9 9 H 1.48510 * 109.46801 * 120.00036 * 7 5 3 10 10 H 1.48494 * 109.47005 * 239.99580 * 7 5 3 11 11 N 1.46896 * 109.47032 * 119.99437 * 2 1 3 12 12 C 1.46900 * 111.00210 * 300.00299 * 11 2 1 13 13 C 1.53001 * 117.50221 * 223.74460 * 12 11 2 14 14 C 1.53001 * 117.50193 * 155.08507 * 12 11 2 15 15 C 1.50694 * 109.47244 * 239.99675 * 2 1 3 16 16 C 1.38250 * 119.97505 * 60.00359 * 15 2 1 17 17 C 1.38196 * 120.02428 * 180.27926 * 16 15 2 18 18 C 1.38457 * 119.97339 * 359.50816 * 17 16 15 19 19 F 1.35103 * 120.02364 * 180.21557 * 18 17 16 20 20 C 1.38456 * 119.94977 * 0.48564 * 18 17 16 21 21 C 1.38199 * 119.97506 * 359.75344 * 20 18 17 22 22 H 1.08995 * 109.47111 * 180.02562 * 1 2 3 23 23 H 1.08992 * 109.47131 * 300.00494 * 1 2 3 24 24 H 1.09006 * 109.46774 * 60.00286 * 1 2 3 25 25 H 0.96997 * 120.00141 * 180.02562 * 6 5 3 26 26 H 1.00900 * 111.00569 * 176.04580 * 11 2 1 27 27 H 1.09000 * 115.55343 * 9.41842 * 12 11 2 28 28 H 1.09008 * 117.49372 * 359.97438 * 13 12 11 29 29 H 1.08996 * 117.50042 * 145.01745 * 13 12 11 30 30 H 1.08997 * 117.50226 * 214.97836 * 14 12 11 31 31 H 1.09007 * 117.49520 * 359.97400 * 14 12 11 32 32 H 1.08002 * 119.98396 * 359.97438 * 16 15 2 33 33 H 1.08004 * 120.00978 * 179.72210 * 17 16 15 34 34 H 1.07999 * 120.01335 * 179.72141 * 20 18 17 35 35 H 1.07999 * 119.98943 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 1 1.3306 2.2417 -0.0004 5 6 3.3879 1.6728 0.0005 6 7 4.2425 0.6732 0.0016 7 14 4.0105 3.4340 -0.0002 8 1 2.8555 4.3674 -0.0007 9 1 4.8350 3.6680 1.2127 10 1 4.8362 3.6666 -1.2123 11 7 2.0197 -0.6924 1.1995 12 6 1.5486 -0.0262 2.4211 13 6 2.5589 0.1703 3.5531 14 6 1.4462 -0.8716 3.6922 15 6 2.0324 -0.7104 -1.2304 16 6 1.6982 -0.2377 -2.4858 17 6 2.1535 -0.8918 -3.6148 18 6 2.9531 -2.0150 -3.4883 19 9 3.4025 -2.6527 -4.5913 20 6 3.2873 -2.4875 -2.2304 21 6 2.8267 -1.8347 -1.1028 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 5.1962 0.8505 0.0023 26 1 3.0262 -0.7625 1.1911 27 1 0.8007 0.7528 2.2732 28 1 3.5732 -0.1951 3.3915 29 1 2.4755 1.0784 4.1501 30 1 0.6313 -0.6485 4.3807 31 1 1.7280 -1.9222 3.6219 32 1 1.0769 0.6402 -2.5842 33 1 1.8886 -0.5249 -4.5954 34 1 3.9073 -3.3662 -2.1306 35 1 3.0869 -2.2032 -0.1216 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260272440.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:52 Heat of formation + Delta-G solvation = -4.694145 kcal Electronic energy + Delta-G solvation = -18589.077241 eV Core-core repulsion = 15694.703373 eV Total energy + Delta-G solvation = -2894.373868 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -49.67547 -40.27766 -38.34043 -35.98115 -33.49036 -31.87463 -30.37888 -29.20511 -27.06181 -24.06043 -23.43381 -22.99853 -21.69167 -20.72942 -18.44208 -18.43412 -17.15021 -16.76883 -16.54490 -16.36466 -16.02146 -15.39618 -14.94300 -14.48435 -14.17061 -14.10734 -13.60815 -13.39215 -13.13895 -13.04614 -12.80189 -12.54529 -12.45547 -12.22090 -12.15932 -11.97823 -11.60193 -11.38659 -10.95022 -10.76616 -10.57567 -9.69776 -9.07807 -8.73810 -7.92058 -6.19811 0.61702 0.67414 1.36681 1.44247 1.49184 2.42937 3.06163 3.19113 3.30671 3.56709 3.78285 4.12620 4.18296 4.31142 4.38140 4.48425 4.68542 4.77316 4.78966 4.92145 4.94656 5.04685 5.06510 5.21206 5.27614 5.31143 5.44469 5.45427 5.52365 5.56249 5.76161 5.79592 6.12378 6.23094 6.33944 6.74993 6.98786 7.15548 7.52783 8.92861 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.018837 B = 0.009442 C = 0.007556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.091895 B = 2964.863808 C = 3704.672208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.253 3.747 3 C -0.538 4.538 4 H 0.049 0.951 5 C 0.047 3.953 6 N -0.891 5.891 7 Si 0.930 3.070 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.291 1.291 11 N -0.654 5.654 12 C 0.049 3.951 13 C -0.214 4.214 14 C -0.169 4.169 15 C -0.016 4.016 16 C -0.100 4.100 17 C -0.162 4.162 18 C 0.048 3.952 19 F -0.156 7.156 20 C -0.164 4.164 21 C -0.071 4.071 22 H 0.044 0.956 23 H 0.050 0.950 24 H 0.051 0.949 25 H 0.260 0.740 26 H 0.349 0.651 27 H 0.095 0.905 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.088 0.912 32 H 0.127 0.873 33 H 0.142 0.858 34 H 0.136 0.864 35 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.045 -2.947 0.342 5.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.163 3.837 3 C -0.577 4.577 4 H 0.067 0.933 5 C -0.156 4.156 6 N -0.529 5.529 7 Si 0.758 3.242 8 H -0.197 1.197 9 H -0.214 1.214 10 H -0.218 1.218 11 N -0.287 5.287 12 C -0.063 4.063 13 C -0.252 4.252 14 C -0.207 4.207 15 C -0.018 4.018 16 C -0.118 4.118 17 C -0.181 4.181 18 C 0.029 3.971 19 F -0.135 7.135 20 C -0.183 4.183 21 C -0.090 4.090 22 H 0.063 0.937 23 H 0.069 0.931 24 H 0.070 0.930 25 H 0.069 0.931 26 H 0.172 0.828 27 H 0.113 0.887 28 H 0.090 0.910 29 H 0.106 0.894 30 H 0.123 0.877 31 H 0.107 0.893 32 H 0.145 0.855 33 H 0.160 0.840 34 H 0.154 0.846 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -4.335 -3.490 0.276 5.572 hybrid contribution 1.595 1.850 -0.210 2.452 sum -2.740 -1.640 0.065 3.193 Atomic orbital electron populations 1.21755 0.95109 1.00028 1.00727 1.17524 0.91407 0.89629 0.85147 1.21768 0.91561 0.92755 1.51638 0.93274 1.25317 0.97292 0.98708 0.94266 1.69776 1.02081 1.30879 1.50145 0.85947 0.78208 0.83122 0.76892 1.19743 1.21417 1.21767 1.60845 1.17673 1.49698 1.00443 1.22111 0.99914 0.98063 0.86229 1.23186 0.95093 1.01169 1.05800 1.23145 1.00311 0.96574 1.00714 1.20201 0.93924 0.92237 0.95396 1.20834 1.00467 0.99147 0.91393 1.21118 1.00626 0.96036 1.00299 1.17698 1.01527 0.95358 0.82493 1.91394 1.88205 1.81519 1.52355 1.21178 1.03446 1.02474 0.91191 1.20789 0.95828 0.94779 0.97559 0.93686 0.93115 0.92973 0.93061 0.82757 0.88711 0.90972 0.89374 0.87687 0.89341 0.85502 0.84049 0.84624 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.47 8.11 71.98 0.58 -3.89 16 2 C 0.25 10.83 0.49 2.04 0.00 10.83 16 3 C -0.54 -25.55 6.70 25.60 0.17 -25.38 16 4 H 0.05 2.39 7.74 -2.91 -0.02 2.37 16 5 C 0.05 2.28 5.22 84.65 0.44 2.72 16 6 N -0.89 -44.58 10.21 21.44 0.22 -44.36 16 7 Si 0.93 41.05 29.54 68.60 2.03 43.08 16 8 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 9 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 10 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 11 N -0.65 -27.42 5.34 -455.68 -2.43 -29.85 16 12 C 0.05 1.86 5.01 44.92 0.23 2.08 16 13 C -0.21 -7.63 10.23 30.62 0.31 -7.31 16 14 C -0.17 -5.33 10.46 30.62 0.32 -5.01 16 15 C -0.02 -0.70 3.69 -19.86 -0.07 -0.77 16 16 C -0.10 -3.99 8.81 22.26 0.20 -3.80 16 17 C -0.16 -5.98 10.03 22.31 0.22 -5.76 16 18 C 0.05 1.83 7.30 22.37 0.16 1.99 16 19 F -0.16 -5.65 17.27 44.97 0.78 -4.87 16 20 C -0.16 -6.26 10.03 22.31 0.22 -6.04 16 21 C -0.07 -2.95 8.63 22.26 0.19 -2.76 16 22 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 23 H 0.05 1.84 6.31 -2.39 -0.02 1.83 16 24 H 0.05 1.86 7.39 -2.38 -0.02 1.84 16 25 H 0.26 12.94 8.31 -92.71 -0.77 12.16 16 26 H 0.35 16.04 5.34 -89.69 -0.48 15.56 16 27 H 0.10 3.75 6.03 -2.39 -0.01 3.73 16 28 H 0.07 2.77 8.09 -2.38 -0.02 2.75 16 29 H 0.09 2.93 8.14 -2.39 -0.02 2.91 16 30 H 0.10 2.79 8.14 -2.39 -0.02 2.77 16 31 H 0.09 2.76 8.14 -2.38 -0.02 2.75 16 32 H 0.13 4.83 7.57 -2.91 -0.02 4.80 16 33 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 34 H 0.14 4.51 8.06 -2.91 -0.02 4.49 16 35 H 0.12 5.18 6.40 -2.91 -0.02 5.16 16 Total: -1.00 -49.89 290.26 4.19 -45.70 By element: Atomic # 1 Polarization: 32.79 SS G_CDS: 0.62 Total: 33.41 kcal Atomic # 6 Polarization: -46.08 SS G_CDS: 2.98 Total: -43.10 kcal Atomic # 7 Polarization: -72.00 SS G_CDS: -2.22 Total: -74.22 kcal Atomic # 9 Polarization: -5.65 SS G_CDS: 0.78 Total: -4.87 kcal Atomic # 14 Polarization: 41.05 SS G_CDS: 2.03 Total: 43.08 kcal Total: -49.89 4.19 -45.70 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260272440.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.007 kcal (2) G-P(sol) polarization free energy of solvation -49.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds