Wall clock time and date at job start Mon Mar 30 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47328 * 2 1 4 4 C 1.40191 * 111.00565 * 290.13156 * 3 2 1 5 5 C 1.39371 * 129.92914 * 76.20023 * 4 3 2 6 6 C 1.37929 * 120.23335 * 180.42884 * 5 4 3 7 7 C 1.38482 * 120.23453 * 0.06990 * 6 5 4 8 8 F 1.35104 * 120.08465 * 179.86437 * 7 6 5 9 9 C 1.38485 * 119.83292 * 0.13646 * 7 6 5 10 10 C 1.37948 * 120.05840 * 359.46173 * 9 7 6 11 11 C 1.51574 * 131.52986 * 180.58041 * 10 9 7 12 12 C 1.47914 * 111.00181 * 170.16858 * 3 2 1 13 13 H 1.09000 * 110.77424 * 336.27745 * 12 3 2 14 14 C 1.52998 * 110.77833 * 212.85172 * 12 3 2 15 15 C 1.50703 * 109.47033 * 65.00008 * 14 12 3 16 16 H 1.07996 * 120.00456 * 359.97438 * 15 14 12 17 17 C 1.37884 * 119.99648 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00009 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47025 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47167 * 119.99708 * 19 17 15 22 22 H 1.48497 * 109.46916 * 239.99661 * 19 17 15 23 23 H 1.08992 * 109.46813 * 299.99631 * 1 2 3 24 24 H 1.09005 * 109.47068 * 59.99378 * 1 2 3 25 25 H 1.08994 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46913 * 240.00441 * 2 1 3 27 27 H 1.08996 * 109.47238 * 120.00675 * 2 1 3 28 28 H 1.07996 * 119.88460 * 0.44955 * 5 4 3 29 29 H 1.08001 * 119.88436 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.96966 * 179.69616 * 9 7 6 31 31 H 1.09005 * 110.73540 * 45.74976 * 11 10 9 32 32 H 1.09000 * 110.89336 * 282.50822 * 11 10 9 33 33 H 1.08998 * 109.46854 * 184.99654 * 14 12 3 34 34 H 1.09001 * 109.47220 * 305.00216 * 14 12 3 35 35 H 0.96999 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7626 2.0089 -1.2288 5 6 0.5707 2.5180 -1.7414 6 6 0.5429 3.0910 -2.9957 7 6 1.6986 3.1633 -3.7552 8 9 1.6673 3.7228 -4.9845 9 6 2.8854 2.6555 -3.2536 10 6 2.9180 2.0893 -1.9961 11 6 4.0521 1.4759 -1.1993 12 6 3.4792 1.4312 0.2358 13 1 3.8149 0.5355 0.7585 14 6 3.8637 2.6915 1.0134 15 6 3.2546 2.6374 2.3907 16 1 2.6529 1.7892 2.6822 17 6 3.4645 3.6713 3.2784 18 7 4.1967 4.7044 2.9233 19 14 2.7100 3.6040 4.9860 20 1 1.9370 2.3450 5.1362 21 1 3.7885 3.6479 6.0058 22 1 1.8042 4.7657 5.1730 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 -0.3341 2.4639 -1.1544 29 1 -0.3837 3.4842 -3.3873 30 1 3.7870 2.7063 -3.8460 31 1 4.9392 2.1081 -1.2411 32 1 4.2789 0.4712 -1.5559 33 1 4.9489 2.7491 1.0981 34 1 3.4931 3.5707 0.4865 35 1 4.3446 5.4316 3.5479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260283114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:39 Heat of formation + Delta-G solvation = -13.097237 kcal Electronic energy + Delta-G solvation = -18209.646414 eV Core-core repulsion = 15314.908161 eV Total energy + Delta-G solvation = -2894.738253 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -48.63128 -40.54447 -36.48668 -33.56944 -32.56790 -30.44609 -29.66791 -27.89370 -26.92332 -23.47996 -22.75855 -21.51318 -20.73600 -19.87314 -16.92097 -16.58310 -16.15362 -15.68563 -15.42124 -14.92150 -14.53662 -14.33955 -13.70522 -13.29577 -13.21885 -12.73000 -12.59079 -12.20613 -12.15238 -11.87663 -11.56193 -11.51065 -11.07006 -10.92292 -10.59119 -10.53334 -10.45455 -10.25362 -9.49873 -9.08657 -8.80973 -8.68259 -8.30825 -7.31448 -5.92874 -3.91841 1.42158 1.48054 3.35336 3.42929 3.46951 3.77587 4.08005 4.45479 4.52121 4.86411 5.06636 5.19543 5.32942 5.44474 5.45468 5.48260 5.56291 5.70569 5.72827 5.84577 5.90936 6.10886 6.14483 6.20436 6.30939 6.37924 6.42298 6.46478 6.68696 6.87597 6.98899 7.34502 7.59053 7.78069 7.87412 8.05345 8.49137 9.12463 9.69935 11.19106 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.006696 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.954668 B = 4180.370774 C = 4546.342744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.057 3.943 3 N -0.470 5.470 4 C 0.110 3.890 5 C -0.093 4.093 6 C -0.140 4.140 7 C 0.068 3.932 8 F -0.147 7.147 9 C -0.124 4.124 10 C -0.109 4.109 11 C -0.112 4.112 12 C 0.091 3.909 13 H 0.082 0.918 14 C 0.036 3.964 15 C -0.494 4.494 16 H 0.058 0.942 17 C 0.053 3.947 18 N -0.900 5.900 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.287 1.287 22 H -0.286 1.286 23 H 0.066 0.934 24 H 0.056 0.944 25 H 0.055 0.945 26 H 0.030 0.970 27 H 0.080 0.920 28 H 0.133 0.867 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.024 0.976 34 H 0.021 0.979 35 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.132 -7.784 -10.628 14.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.068 4.068 3 N -0.187 5.187 4 C 0.012 3.988 5 C -0.113 4.113 6 C -0.159 4.159 7 C 0.048 3.952 8 F -0.126 7.126 9 C -0.144 4.144 10 C -0.112 4.112 11 C -0.150 4.150 12 C -0.015 4.015 13 H 0.100 0.900 14 C -0.001 4.001 15 C -0.533 4.533 16 H 0.076 0.924 17 C -0.147 4.147 18 N -0.541 5.541 19 Si 0.719 3.281 20 H -0.198 1.198 21 H -0.213 1.213 22 H -0.212 1.212 23 H 0.085 0.915 24 H 0.075 0.925 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.098 0.902 28 H 0.150 0.850 29 H 0.151 0.849 30 H 0.146 0.854 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.042 0.958 34 H 0.039 0.961 35 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -5.335 -7.409 -10.113 13.625 hybrid contribution 0.012 -0.011 0.169 0.170 sum -5.323 -7.420 -9.944 13.501 Atomic orbital electron populations 1.21918 0.95177 1.01185 1.02877 1.22118 0.96141 0.87897 1.00661 1.60099 1.17229 1.14566 1.26759 1.19730 0.93406 0.96648 0.88968 1.20371 0.97371 0.98779 0.94808 1.20798 0.97411 1.02655 0.95037 1.17373 0.94904 1.01245 0.81662 1.91449 1.97274 1.83370 1.40482 1.20246 0.97022 1.01057 0.96043 1.20926 0.97325 0.99832 0.93142 1.21917 0.97125 0.99959 0.96020 1.23014 0.82689 1.02976 0.92832 0.90020 1.19111 0.96230 0.90223 0.94549 1.21093 1.30257 1.04734 0.97208 0.92356 1.24992 0.95594 0.95627 0.98515 1.69968 1.39707 1.08789 1.35591 0.86563 0.78955 0.77900 0.84711 1.19811 1.21296 1.21239 0.91469 0.92482 0.92642 0.95133 0.90171 0.84950 0.84910 0.85400 0.89317 0.90891 0.95779 0.96074 0.93252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.03 9.77 37.16 0.36 -1.67 16 2 C 0.06 0.87 5.47 -3.83 -0.02 0.85 16 3 N -0.47 -8.83 4.50 -161.55 -0.73 -9.56 16 4 C 0.11 1.96 5.25 -83.35 -0.44 1.52 16 5 C -0.09 -1.47 8.54 -39.27 -0.34 -1.80 16 6 C -0.14 -2.02 10.00 -39.60 -0.40 -2.42 16 7 C 0.07 1.05 7.31 -39.40 -0.29 0.76 16 8 F -0.15 -2.22 17.27 2.25 0.04 -2.18 16 9 C -0.12 -1.95 10.01 -39.60 -0.40 -2.35 16 10 C -0.11 -1.88 6.22 -104.04 -0.65 -2.52 16 11 C -0.11 -1.87 6.51 -26.62 -0.17 -2.04 16 12 C 0.09 1.80 2.63 -66.32 -0.17 1.62 16 13 H 0.08 1.52 7.60 -51.93 -0.39 1.13 16 14 C 0.04 0.91 4.60 -27.88 -0.13 0.78 16 15 C -0.49 -13.67 8.89 -34.44 -0.31 -13.98 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.05 1.51 5.46 -17.82 -0.10 1.41 16 18 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 19 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 20 H -0.27 -6.55 7.11 56.52 0.40 -6.14 16 21 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 24 H 0.06 0.73 5.55 -51.93 -0.29 0.44 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.43 8.06 -51.92 -0.42 0.01 16 27 H 0.08 1.19 7.85 -51.93 -0.41 0.79 16 28 H 0.13 1.88 7.15 -52.49 -0.38 1.50 16 29 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 30 H 0.13 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.09 1.47 7.92 -51.93 -0.41 1.06 16 32 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 293.58 15.07 4.42 4.42 Total: -1.00 -30.34 293.58 -8.38 -38.72 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -4.80 Total: -2.02 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: -3.04 Total: -19.83 kcal Atomic # 7 Polarization: -35.93 SS G_CDS: 0.01 Total: -35.92 kcal Atomic # 9 Polarization: -2.22 SS G_CDS: 0.04 Total: -2.18 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -30.34 -8.38 -38.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.622 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.719 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds