Wall clock time and date at job start Mon Mar 30 2020 06:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46898 * 109.47328 * 2 1 4 4 C 1.40191 * 111.00565 * 290.13156 * 3 2 1 5 5 C 1.39371 * 129.92914 * 76.20023 * 4 3 2 6 6 C 1.37929 * 120.23335 * 180.42884 * 5 4 3 7 7 C 1.38482 * 120.23453 * 0.06990 * 6 5 4 8 8 F 1.35104 * 120.08465 * 179.86437 * 7 6 5 9 9 C 1.38485 * 119.83292 * 0.13646 * 7 6 5 10 10 C 1.37948 * 120.05840 * 359.46173 * 9 7 6 11 11 C 1.51574 * 131.52986 * 180.58041 * 10 9 7 12 12 C 1.47914 * 111.00181 * 170.16858 * 3 2 1 13 13 H 1.09000 * 110.77424 * 336.27745 * 12 3 2 14 14 C 1.52998 * 110.77833 * 212.85172 * 12 3 2 15 15 C 1.50703 * 109.47033 * 65.00008 * 14 12 3 16 16 H 1.07996 * 120.00456 * 359.97438 * 15 14 12 17 17 C 1.37884 * 119.99648 * 180.02562 * 15 14 12 18 18 N 1.31510 * 120.00009 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99698 * 180.02562 * 17 15 14 20 20 H 1.48497 * 109.47025 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47167 * 119.99708 * 19 17 15 22 22 H 1.48497 * 109.46916 * 239.99661 * 19 17 15 23 23 H 1.08992 * 109.46813 * 299.99631 * 1 2 3 24 24 H 1.09005 * 109.47068 * 59.99378 * 1 2 3 25 25 H 1.08994 * 109.47042 * 179.97438 * 1 2 3 26 26 H 1.09009 * 109.46913 * 240.00441 * 2 1 3 27 27 H 1.08996 * 109.47238 * 120.00675 * 2 1 3 28 28 H 1.07996 * 119.88460 * 0.44955 * 5 4 3 29 29 H 1.08001 * 119.88436 * 180.02562 * 6 5 4 30 30 H 1.08001 * 119.96966 * 179.69616 * 9 7 6 31 31 H 1.09005 * 110.73540 * 45.74976 * 11 10 9 32 32 H 1.09000 * 110.89336 * 282.50822 * 11 10 9 33 33 H 1.08998 * 109.46854 * 184.99654 * 14 12 3 34 34 H 1.09001 * 109.47220 * 305.00216 * 14 12 3 35 35 H 0.96999 * 119.99640 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7626 2.0089 -1.2288 5 6 0.5707 2.5180 -1.7414 6 6 0.5429 3.0910 -2.9957 7 6 1.6986 3.1633 -3.7552 8 9 1.6673 3.7228 -4.9845 9 6 2.8854 2.6555 -3.2536 10 6 2.9180 2.0893 -1.9961 11 6 4.0521 1.4759 -1.1993 12 6 3.4792 1.4312 0.2358 13 1 3.8149 0.5355 0.7585 14 6 3.8637 2.6915 1.0134 15 6 3.2546 2.6374 2.3907 16 1 2.6529 1.7892 2.6822 17 6 3.4645 3.6713 3.2784 18 7 4.1967 4.7044 2.9233 19 14 2.7100 3.6040 4.9860 20 1 1.9370 2.3450 5.1362 21 1 3.7885 3.6479 6.0058 22 1 1.8042 4.7657 5.1730 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5140 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 -0.3341 2.4639 -1.1544 29 1 -0.3837 3.4842 -3.3873 30 1 3.7870 2.7063 -3.8460 31 1 4.9392 2.1081 -1.2411 32 1 4.2789 0.4712 -1.5559 33 1 4.9489 2.7491 1.0981 34 1 3.4931 3.5707 0.4865 35 1 4.3446 5.4316 3.5479 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283114.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:39 Heat of formation + Delta-G solvation = -29.799574 kcal Electronic energy + Delta-G solvation = -18210.370681 eV Core-core repulsion = 15314.908161 eV Total energy + Delta-G solvation = -2895.462521 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.82377 -41.85901 -37.78384 -35.26777 -34.23996 -31.78518 -31.19698 -29.14156 -28.58854 -25.33651 -23.95277 -22.89511 -22.00050 -21.38399 -18.47324 -18.11284 -17.63616 -17.05203 -16.71030 -16.46870 -16.15151 -15.58410 -15.11432 -14.56625 -14.49155 -14.08251 -13.99862 -13.88363 -13.63495 -13.45207 -12.93759 -12.84349 -12.66237 -12.43288 -12.29208 -12.10520 -11.91124 -11.76553 -11.30472 -11.11714 -10.51835 -10.14816 -9.89583 -8.63499 -8.11630 -6.17702 0.18585 0.26906 1.41243 1.42472 1.54895 2.45890 2.55433 2.75956 3.21393 3.24912 3.64526 3.80822 4.02429 4.12733 4.19133 4.26592 4.32874 4.47821 4.58673 4.65476 4.74640 4.79500 4.97241 5.01027 5.07939 5.09175 5.19361 5.24740 5.36649 5.44166 5.47158 5.64036 5.79023 5.88667 6.19472 6.36615 6.45072 6.95869 7.48531 9.00741 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.023446 B = 0.006696 C = 0.006157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.954668 B = 4180.370774 C = 4546.342744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.055 3.945 3 N -0.492 5.492 4 C 0.087 3.913 5 C -0.099 4.099 6 C -0.131 4.131 7 C 0.061 3.939 8 F -0.145 7.145 9 C -0.127 4.127 10 C -0.128 4.128 11 C -0.102 4.102 12 C 0.094 3.906 13 H 0.091 0.909 14 C 0.045 3.955 15 C -0.502 4.502 16 H 0.061 0.939 17 C -0.005 4.005 18 N -0.940 5.940 19 Si 0.959 3.041 20 H -0.262 1.262 21 H -0.281 1.281 22 H -0.286 1.286 23 H 0.052 0.948 24 H 0.060 0.940 25 H 0.081 0.919 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.145 0.855 29 H 0.163 0.837 30 H 0.145 0.855 31 H 0.082 0.918 32 H 0.102 0.898 33 H 0.001 0.999 34 H -0.018 1.018 35 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.460 -8.974 -11.049 15.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.069 4.069 3 N -0.209 5.209 4 C -0.010 4.010 5 C -0.118 4.118 6 C -0.150 4.150 7 C 0.042 3.958 8 F -0.124 7.124 9 C -0.147 4.147 10 C -0.131 4.131 11 C -0.140 4.140 12 C -0.013 4.013 13 H 0.109 0.891 14 C 0.008 3.992 15 C -0.540 4.540 16 H 0.079 0.921 17 C -0.202 4.202 18 N -0.582 5.582 19 Si 0.784 3.216 20 H -0.185 1.185 21 H -0.207 1.207 22 H -0.212 1.212 23 H 0.071 0.929 24 H 0.079 0.921 25 H 0.100 0.900 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.163 0.837 29 H 0.180 0.820 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.121 0.879 33 H 0.020 0.980 34 H 0.001 0.999 35 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -6.672 -8.620 -10.544 15.166 hybrid contribution 0.415 0.378 0.244 0.612 sum -6.258 -8.242 -10.300 14.601 Atomic orbital electron populations 1.21878 0.93642 1.02727 1.02294 1.22225 0.97404 0.86122 1.01200 1.60011 1.16248 1.16803 1.27864 1.19984 0.94527 0.97567 0.88936 1.20582 0.97257 0.98598 0.95410 1.21100 0.98321 1.01331 0.94249 1.17510 0.95207 1.01254 0.81865 1.91456 1.97275 1.83314 1.40319 1.20438 0.97997 1.00479 0.95746 1.21034 0.97233 1.00932 0.93863 1.21795 0.96609 1.01562 0.94071 1.22682 0.84391 1.00153 0.94088 0.89090 1.18898 0.94443 0.91658 0.94204 1.21461 1.29716 1.04532 0.98297 0.92120 1.25884 0.96167 0.95354 1.02760 1.70107 1.41334 1.09651 1.37093 0.85489 0.78167 0.78158 0.79751 1.18547 1.20651 1.21211 0.92927 0.92116 0.90025 0.93826 0.90259 0.83686 0.81961 0.83766 0.89976 0.87937 0.98047 0.99929 0.93248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.77 71.98 0.70 -2.89 16 2 C 0.06 1.58 5.47 86.30 0.47 2.06 16 3 N -0.49 -18.21 4.50 -665.02 -2.99 -21.21 16 4 C 0.09 3.03 5.25 38.24 0.20 3.23 16 5 C -0.10 -2.95 8.54 22.47 0.19 -2.75 16 6 C -0.13 -3.50 10.00 22.25 0.22 -3.27 16 7 C 0.06 1.78 7.31 22.39 0.16 1.94 16 8 F -0.14 -4.08 17.27 44.97 0.78 -3.31 16 9 C -0.13 -3.83 10.01 22.26 0.22 -3.61 16 10 C -0.13 -4.28 6.22 -19.49 -0.12 -4.40 16 11 C -0.10 -3.35 6.51 30.67 0.20 -3.15 16 12 C 0.09 3.70 2.63 45.26 0.12 3.82 16 13 H 0.09 3.35 7.60 -2.39 -0.02 3.34 16 14 C 0.05 2.36 4.60 29.85 0.14 2.49 16 15 C -0.50 -28.15 8.89 25.60 0.23 -27.92 16 16 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 17 C -0.01 -0.32 5.46 84.66 0.46 0.15 16 18 N -0.94 -57.96 13.29 21.45 0.28 -57.67 16 19 Si 0.96 45.03 29.54 68.60 2.03 47.06 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 23 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 24 H 0.06 1.42 5.55 -2.38 -0.01 1.40 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.04 1.13 8.06 -2.38 -0.02 1.12 16 27 H 0.08 2.24 7.85 -2.39 -0.02 2.22 16 28 H 0.15 3.86 7.15 -2.91 -0.02 3.84 16 29 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 30 H 0.14 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.08 2.75 7.92 -2.38 -0.02 2.74 16 32 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 34 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 35 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -65.70 293.58 4.37 -61.33 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: 1.07 Total: 8.12 kcal Atomic # 6 Polarization: -37.52 SS G_CDS: 3.20 Total: -34.32 kcal Atomic # 7 Polarization: -76.17 SS G_CDS: -2.71 Total: -78.88 kcal Atomic # 9 Polarization: -4.08 SS G_CDS: 0.78 Total: -3.31 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -65.70 4.37 -61.33 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283114.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.529 kcal (2) G-P(sol) polarization free energy of solvation -65.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds