Wall clock time and date at job start Mon Mar 30 2020 06:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46900 * 109.46541 * 2 1 4 4 C 1.40194 * 111.00270 * 304.20018 * 3 2 1 5 5 C 1.39374 * 129.92938 * 319.74207 * 4 3 2 6 6 C 1.37919 * 120.23499 * 180.69337 * 5 4 3 7 7 C 1.38485 * 120.23409 * 0.04519 * 6 5 4 8 8 F 1.35097 * 120.08699 * 179.87565 * 7 6 5 9 9 C 1.38479 * 119.83315 * 359.84569 * 7 6 5 10 10 C 1.37951 * 120.05908 * 0.02562 * 9 7 6 11 11 C 1.51571 * 131.52589 * 180.26294 * 10 9 7 12 12 C 1.47907 * 111.00316 * 64.14719 * 3 2 1 13 13 H 1.09000 * 110.94108 * 329.27271 * 12 3 2 14 14 C 1.53002 * 110.77905 * 92.62419 * 12 3 2 15 15 C 1.50701 * 109.47417 * 286.68874 * 14 12 3 16 16 H 1.07997 * 119.99792 * 354.15013 * 15 14 12 17 17 C 1.37879 * 120.00149 * 174.42739 * 15 14 12 18 18 N 1.31517 * 119.99608 * 359.72193 * 17 15 14 19 19 Si 1.86795 * 120.00109 * 179.72223 * 17 15 14 20 20 H 1.48507 * 109.47019 * 89.99638 * 19 17 15 21 21 H 1.48498 * 109.47218 * 209.99682 * 19 17 15 22 22 H 1.48501 * 109.47186 * 330.00107 * 19 17 15 23 23 H 1.09005 * 109.46873 * 174.77192 * 1 2 3 24 24 H 1.08994 * 109.47069 * 294.76759 * 1 2 3 25 25 H 1.08998 * 109.47319 * 54.77588 * 1 2 3 26 26 H 1.08999 * 109.47501 * 239.99942 * 2 1 3 27 27 H 1.09001 * 109.47252 * 119.99707 * 2 1 3 28 28 H 1.08010 * 119.88262 * 0.71398 * 5 4 3 29 29 H 1.08000 * 119.88774 * 180.02562 * 6 5 4 30 30 H 1.07992 * 119.97184 * 179.97438 * 9 7 6 31 31 H 1.09002 * 110.73535 * 45.67657 * 11 10 9 32 32 H 1.09004 * 110.74385 * 282.35853 * 11 10 9 33 33 H 1.09001 * 109.46994 * 166.68460 * 14 12 3 34 34 H 1.09001 * 109.47164 * 46.69020 * 14 12 3 35 35 H 0.97001 * 119.99393 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4934 2.1039 -1.0825 5 6 1.2876 1.7091 -2.4032 6 6 0.7624 2.5962 -3.3194 7 6 0.4367 3.8858 -2.9338 8 9 -0.0752 4.7531 -3.8343 9 6 0.6365 4.2840 -1.6227 10 6 1.1591 3.3981 -0.7034 11 6 1.4754 3.5499 0.7711 12 6 1.6285 2.0855 1.2426 13 1 0.6830 1.7013 1.6253 14 6 2.7275 1.9683 2.3006 15 6 2.7446 0.5667 2.8542 16 1 1.9833 -0.1399 2.5584 17 6 3.7287 0.1883 3.7427 18 7 4.6556 1.0489 4.1028 19 14 3.7453 -1.5467 4.4347 20 1 4.5528 -2.4247 3.5503 21 1 4.3412 -1.5314 5.7948 22 1 2.3550 -2.0632 4.5092 23 1 -0.3633 -1.0235 -0.0936 24 1 -0.3633 0.4305 0.9331 25 1 -0.3634 0.5927 -0.8395 26 1 1.8934 -0.5138 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 1.5400 0.7048 -2.7102 29 1 0.6048 2.2842 -4.3413 30 1 0.3837 5.2892 -1.3196 31 1 0.6534 4.0391 1.2937 32 1 2.4056 4.1004 0.9118 33 1 2.5323 2.6751 3.1071 34 1 3.6934 2.1917 1.8476 35 1 5.3482 0.7825 4.7276 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260283122.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:43 Heat of formation + Delta-G solvation = -30.849334 kcal Electronic energy + Delta-G solvation = -18197.138627 eV Core-core repulsion = 15301.630585 eV Total energy + Delta-G solvation = -2895.508042 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.75220 -41.88170 -37.90652 -35.18722 -34.44024 -31.74887 -31.44458 -29.05505 -28.37162 -25.27782 -24.30317 -22.60455 -22.40614 -21.00601 -18.55668 -17.98186 -17.69819 -17.26597 -16.77003 -16.44918 -16.16962 -15.36921 -14.94928 -14.70316 -14.33883 -14.20940 -13.97356 -13.79692 -13.65847 -13.44194 -13.15177 -12.87622 -12.66834 -12.41787 -12.34442 -12.22912 -11.81987 -11.73113 -11.36565 -10.98878 -10.52385 -10.49003 -9.89140 -8.47406 -8.13921 -6.21653 0.25282 0.28996 1.42797 1.42985 1.52837 2.43745 2.54894 2.91501 3.21519 3.26743 3.64267 3.80191 4.00820 4.15720 4.18888 4.28433 4.36760 4.40658 4.48553 4.58175 4.78629 4.87257 4.96668 4.98060 5.07639 5.10602 5.16221 5.24566 5.32336 5.40493 5.47366 5.62242 5.85467 5.86917 6.20246 6.26280 6.41906 6.91582 7.45193 8.98231 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.040467 B = 0.005709 C = 0.005265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 691.750411 B = 4903.705109 C = 5316.727999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.036 3.964 3 N -0.475 5.475 4 C 0.093 3.907 5 C -0.121 4.121 6 C -0.117 4.117 7 C 0.047 3.953 8 F -0.147 7.147 9 C -0.113 4.113 10 C -0.133 4.133 11 C -0.081 4.081 12 C 0.091 3.909 13 H 0.067 0.933 14 C 0.042 3.958 15 C -0.520 4.520 16 H 0.069 0.931 17 C 0.002 3.998 18 N -0.935 5.935 19 Si 0.955 3.045 20 H -0.276 1.276 21 H -0.288 1.288 22 H -0.260 1.260 23 H 0.080 0.920 24 H 0.047 0.953 25 H 0.061 0.939 26 H 0.086 0.914 27 H 0.082 0.918 28 H 0.146 0.854 29 H 0.162 0.838 30 H 0.145 0.855 31 H 0.095 0.905 32 H 0.077 0.923 33 H 0.003 0.997 34 H -0.003 1.003 35 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.897 1.220 -12.512 16.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.090 4.090 3 N -0.187 5.187 4 C -0.007 4.007 5 C -0.142 4.142 6 C -0.136 4.136 7 C 0.027 3.973 8 F -0.126 7.126 9 C -0.132 4.132 10 C -0.137 4.137 11 C -0.118 4.118 12 C -0.015 4.015 13 H 0.085 0.915 14 C 0.004 3.996 15 C -0.558 4.558 16 H 0.087 0.913 17 C -0.195 4.195 18 N -0.576 5.576 19 Si 0.780 3.220 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.185 1.185 23 H 0.099 0.901 24 H 0.066 0.934 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.101 0.899 28 H 0.164 0.836 29 H 0.180 0.820 30 H 0.163 0.837 31 H 0.113 0.887 32 H 0.096 0.904 33 H 0.021 0.979 34 H 0.016 0.984 35 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.185 1.159 -12.370 15.451 hybrid contribution -0.145 -0.448 0.691 0.836 sum -9.330 0.710 -11.679 14.965 Atomic orbital electron populations 1.22349 0.96057 1.03362 1.01725 1.22484 0.94332 0.88102 1.04033 1.60473 1.52836 1.03952 1.01461 1.20122 0.93170 0.94085 0.93351 1.20468 1.02541 1.01204 0.89961 1.21047 0.99915 0.91239 1.01377 1.17441 1.03958 0.88961 0.86983 1.91451 1.85265 1.69200 1.66672 1.20399 1.01019 1.00718 0.91067 1.20454 1.02054 0.94715 0.96437 1.21412 1.02423 0.97096 0.90890 1.22777 0.98224 0.91229 0.89257 0.91542 1.18934 0.92769 0.96103 0.91762 1.21585 1.11332 0.98063 1.24799 0.91322 1.25851 0.95388 1.01124 0.97174 1.70100 1.15781 1.36715 1.34967 0.85597 0.78749 0.80179 0.77441 1.20204 1.21387 1.18456 0.90099 0.93402 0.92016 0.89540 0.89930 0.83617 0.82042 0.83685 0.88689 0.90440 0.97925 0.98444 0.93102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.85 9.32 71.98 0.67 -4.18 16 2 C 0.04 1.19 5.68 86.30 0.49 1.68 16 3 N -0.48 -17.77 4.95 -664.99 -3.29 -21.06 16 4 C 0.09 2.98 4.68 38.24 0.18 3.16 16 5 C -0.12 -3.12 8.62 22.47 0.19 -2.93 16 6 C -0.12 -2.69 10.00 22.25 0.22 -2.47 16 7 C 0.05 1.21 7.31 22.39 0.16 1.37 16 8 F -0.15 -3.75 17.27 44.97 0.78 -2.98 16 9 C -0.11 -3.06 10.01 22.26 0.22 -2.84 16 10 C -0.13 -4.19 6.23 -19.49 -0.12 -4.31 16 11 C -0.08 -2.74 6.57 30.67 0.20 -2.54 16 12 C 0.09 3.62 2.40 45.27 0.11 3.73 16 13 H 0.07 2.59 5.91 -2.39 -0.01 2.58 16 14 C 0.04 2.11 4.61 29.85 0.14 2.25 16 15 C -0.52 -27.72 8.18 25.60 0.21 -27.51 16 16 H 0.07 3.44 5.75 -2.91 -0.02 3.43 16 17 C 0.00 0.11 5.46 84.65 0.46 0.57 16 18 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 19 Si 0.95 43.01 29.54 68.60 2.03 45.04 16 20 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 21 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 22 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 23 H 0.08 1.85 8.14 -2.38 -0.02 1.83 16 24 H 0.05 1.43 6.38 -2.39 -0.02 1.41 16 25 H 0.06 1.60 6.23 -2.39 -0.01 1.59 16 26 H 0.09 2.47 7.52 -2.39 -0.02 2.45 16 27 H 0.08 3.18 5.16 -2.39 -0.01 3.17 16 28 H 0.15 3.18 7.50 -2.91 -0.02 3.16 16 29 H 0.16 2.72 8.06 -2.91 -0.02 2.70 16 30 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 31 H 0.09 2.78 8.14 -2.39 -0.02 2.76 16 32 H 0.08 2.78 7.92 -2.39 -0.02 2.76 16 33 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 34 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 35 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 Total: -1.00 -61.63 284.81 4.03 -57.60 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 1.09 Total: 11.06 kcal Atomic # 6 Polarization: -37.16 SS G_CDS: 3.14 Total: -34.02 kcal Atomic # 7 Polarization: -73.70 SS G_CDS: -3.01 Total: -76.71 kcal Atomic # 9 Polarization: -3.75 SS G_CDS: 0.78 Total: -2.98 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -61.63 4.03 -57.60 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260283122.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.750 kcal (2) G-P(sol) polarization free energy of solvation -61.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds