Wall clock time and date at job start Mon Mar 30 2020 07:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99838 * 2 1 4 4 C 1.39837 * 111.00040 * 123.95175 * 2 1 3 5 5 C 1.39117 * 120.07935 * 297.64713 * 4 2 1 6 6 F 1.35100 * 120.05722 * 359.95925 * 5 4 2 7 7 C 1.38240 * 119.88836 * 179.97438 * 5 4 2 8 8 C 1.38336 * 120.04944 * 0.02562 * 7 5 4 9 9 C 1.38227 * 120.15805 * 359.71063 * 8 7 5 10 10 C 1.38198 * 120.11367 * 0.56702 * 9 8 7 11 11 C 1.50699 * 120.02794 * 179.71824 * 10 9 8 12 12 C 1.50694 * 115.55372 * 100.15501 * 11 10 9 13 13 H 1.08000 * 120.00464 * 144.38972 * 12 11 10 14 14 C 1.37877 * 119.99933 * 324.39075 * 12 11 10 15 15 N 1.31511 * 120.00126 * 4.14152 * 14 12 11 16 16 Si 1.86804 * 120.00038 * 184.14103 * 14 12 11 17 17 H 1.48497 * 109.47040 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47232 * 120.00078 * 16 14 12 19 19 H 1.48501 * 109.47034 * 240.00332 * 16 14 12 20 20 C 1.53004 * 117.49766 * 314.45093 * 11 10 9 21 21 C 1.52998 * 59.99951 * 252.51014 * 20 11 10 22 22 H 1.09001 * 109.47521 * 302.11186 * 1 2 3 23 23 H 1.09002 * 109.47448 * 62.11354 * 1 2 3 24 24 H 1.08998 * 109.47171 * 182.10770 * 1 2 3 25 25 H 1.09002 * 109.46842 * 187.66539 * 3 2 1 26 26 H 1.08997 * 109.46996 * 307.66239 * 3 2 1 27 27 H 1.08996 * 109.47214 * 67.66356 * 3 2 1 28 28 H 1.07998 * 119.97739 * 179.97438 * 7 5 4 29 29 H 1.07997 * 119.92206 * 180.02562 * 8 7 5 30 30 H 1.08000 * 119.94572 * 180.27931 * 9 8 7 31 31 H 0.97000 * 120.00335 * 175.00448 * 15 14 12 32 32 H 1.09005 * 117.49702 * 359.97438 * 20 11 10 33 33 H 1.08994 * 117.50199 * 145.01988 * 20 11 10 34 34 H 1.09001 * 117.50137 * 252.51139 * 21 20 11 35 35 H 1.09004 * 117.49930 * 107.48948 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9701 -0.7291 1.0829 5 6 1.6985 -0.3199 2.3845 6 9 0.9506 0.7834 2.6048 7 6 2.1955 -1.0439 3.4521 8 6 2.9620 -2.1732 3.2264 9 6 3.2286 -2.5846 1.9340 10 6 2.7399 -1.8626 0.8618 11 6 3.0370 -2.3094 -0.5465 12 6 1.9297 -3.0635 -1.2364 13 1 1.7658 -2.9328 -2.2959 14 6 1.1258 -3.9205 -0.5151 15 7 1.2718 -4.0186 0.7882 16 14 -0.1710 -4.9423 -1.3891 17 1 -0.1334 -4.6500 -2.8445 18 1 0.1024 -6.3848 -1.1663 19 1 -1.5132 -4.6040 -0.8512 20 6 4.4765 -2.7143 -0.8702 21 6 3.9133 -1.3970 -1.4070 22 1 -0.3634 0.5463 0.8704 23 1 -0.3634 0.4807 -0.9083 24 1 -0.3633 -1.0269 0.0378 25 1 3.0765 1.3457 -0.1371 26 1 1.5394 1.9357 -0.8135 27 1 1.7610 1.8506 0.9505 28 1 1.9858 -0.7273 4.4631 29 1 3.3489 -2.7375 4.0620 30 1 3.8236 -3.4693 1.7618 31 1 0.6599 -4.5656 1.3050 32 1 5.2087 -2.6571 -0.0647 33 1 4.6229 -3.5264 -1.5823 34 1 3.6889 -1.3424 -2.4723 35 1 4.2748 -0.4735 -0.9546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260301203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:01 Heat of formation + Delta-G solvation = 22.921944 kcal Electronic energy + Delta-G solvation = -19200.866137 eV Core-core repulsion = 16307.689793 eV Total energy + Delta-G solvation = -2893.176344 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.27811 -38.95165 -36.03031 -35.45922 -32.09738 -29.33331 -28.87128 -26.94826 -25.58007 -23.64398 -22.34741 -21.27047 -20.25093 -19.21632 -17.04831 -15.99547 -15.75891 -15.26301 -15.00922 -14.59620 -14.16877 -13.88352 -13.69086 -13.13875 -13.03803 -12.62493 -11.93795 -11.68828 -11.62086 -11.19153 -11.11381 -11.04812 -10.90894 -10.76765 -10.55770 -10.38253 -10.23172 -9.54852 -9.08880 -8.77340 -8.21536 -7.68091 -7.64344 -7.59792 -5.88675 -4.04343 2.14991 2.31321 3.26769 3.36320 3.39873 4.39379 4.58521 4.69884 4.98492 5.10747 5.52439 5.61685 5.74496 5.90718 5.94174 6.05829 6.11191 6.12070 6.27037 6.30503 6.40952 6.56736 6.61679 6.71752 6.76979 6.78967 6.97661 7.04466 7.15951 7.34313 7.51248 7.56361 7.66351 7.82787 7.91548 8.31743 8.40233 8.91117 9.52983 11.00582 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.010492 C = 0.010451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.793903 B = 2668.121630 C = 2678.623661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 N -0.475 5.475 3 C 0.023 3.977 4 C 0.055 3.945 5 C 0.043 3.957 6 F -0.156 7.156 7 C -0.176 4.176 8 C -0.114 4.114 9 C -0.057 4.057 10 C 0.089 3.911 11 C 0.094 3.906 12 C -0.465 4.465 13 H 0.063 0.937 14 C 0.069 3.931 15 N -0.876 5.876 16 Si 0.890 3.110 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.215 4.215 21 C -0.182 4.182 22 H 0.022 0.978 23 H 0.061 0.939 24 H 0.074 0.926 25 H 0.063 0.937 26 H 0.063 0.937 27 H 0.028 0.972 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.260 0.740 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.076 0.924 35 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 5.665 2.455 6.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.194 5.194 3 C -0.124 4.124 4 C -0.040 4.040 5 C 0.022 3.978 6 F -0.135 7.135 7 C -0.195 4.195 8 C -0.132 4.132 9 C -0.076 4.076 10 C 0.088 3.912 11 C 0.094 3.906 12 C -0.502 4.502 13 H 0.081 0.919 14 C -0.134 4.134 15 N -0.513 5.513 16 Si 0.718 3.282 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.212 1.212 20 C -0.253 4.253 21 C -0.219 4.219 22 H 0.041 0.959 23 H 0.080 0.920 24 H 0.093 0.907 25 H 0.081 0.919 26 H 0.082 0.918 27 H 0.046 0.954 28 H 0.131 0.869 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.015 5.333 2.149 6.092 hybrid contribution -1.345 -0.084 0.509 1.441 sum 0.670 5.249 2.658 5.921 Atomic orbital electron populations 1.22351 0.86793 1.02718 0.99538 1.59351 1.07644 1.11869 1.40582 1.22466 1.00618 0.89211 1.00136 1.18470 1.02083 0.97539 0.85945 1.18417 0.97860 0.86420 0.95110 1.91324 1.74936 1.51575 1.95645 1.20629 1.03511 0.98467 0.96934 1.20721 0.99398 0.96023 0.97102 1.20685 0.98623 0.97319 0.90962 1.18915 0.89209 0.87980 0.95135 1.17512 0.88986 0.95702 0.88424 1.20433 1.13635 1.21584 0.94578 0.91880 1.24975 0.97046 0.96402 0.94946 1.69950 1.36749 1.39760 1.04841 0.86559 0.81404 0.80226 0.80014 1.19748 1.21072 1.21160 1.23183 1.00846 0.98059 1.03234 1.22697 1.07430 0.92543 0.99219 0.95911 0.92014 0.90701 0.91852 0.91819 0.95400 0.86909 0.86868 0.86416 0.92949 0.91688 0.90284 0.90564 0.91613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 9.21 60.06 0.55 1.20 16 2 N -0.48 -9.82 4.09 -186.78 -0.76 -10.59 16 3 C 0.02 0.40 9.37 60.07 0.56 0.96 16 4 C 0.05 1.21 4.67 -83.68 -0.39 0.82 16 5 C 0.04 0.90 6.68 -39.25 -0.26 0.64 16 6 F -0.16 -3.13 13.46 2.25 0.03 -3.10 16 7 C -0.18 -3.40 10.02 -39.54 -0.40 -3.80 16 8 C -0.11 -2.19 10.04 -39.55 -0.40 -2.59 16 9 C -0.06 -1.23 7.49 -39.60 -0.30 -1.53 16 10 C 0.09 2.05 3.48 -104.43 -0.36 1.69 16 11 C 0.09 2.23 1.48 -156.81 -0.23 2.00 16 12 C -0.46 -12.11 9.05 -34.44 -0.31 -12.42 16 13 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 14 C 0.07 1.79 5.39 -17.82 -0.10 1.70 16 15 N -0.88 -23.10 10.01 55.43 0.55 -22.54 16 16 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 17 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 C -0.22 -4.64 9.54 -26.73 -0.25 -4.89 16 21 C -0.18 -3.86 9.63 -26.73 -0.26 -4.11 16 22 H 0.02 0.43 6.42 -51.93 -0.33 0.10 16 23 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.07 1.66 8.10 -51.93 -0.42 1.24 16 25 H 0.06 1.07 7.87 -51.93 -0.41 0.66 16 26 H 0.06 0.97 8.11 -51.93 -0.42 0.55 16 27 H 0.03 0.48 6.09 -51.93 -0.32 0.17 16 28 H 0.11 1.89 8.06 -52.49 -0.42 1.46 16 29 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 30 H 0.12 2.56 7.91 -52.49 -0.42 2.14 16 31 H 0.26 6.73 8.32 -40.82 -0.34 6.39 16 32 H 0.06 1.30 7.99 -51.93 -0.41 0.89 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.27 16 34 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 35 H 0.07 1.32 7.87 -51.93 -0.41 0.92 16 LS Contribution 291.50 15.07 4.39 4.39 Total: -1.00 -26.92 291.50 -7.75 -34.67 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -4.80 Total: 1.90 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: -2.14 Total: -20.34 kcal Atomic # 7 Polarization: -32.92 SS G_CDS: -0.21 Total: -33.13 kcal Atomic # 9 Polarization: -3.13 SS G_CDS: 0.03 Total: -3.10 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -26.92 -7.75 -34.67 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.588 kcal (2) G-P(sol) polarization free energy of solvation -26.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.666 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds