Wall clock time and date at job start Mon Mar 30 2020 07:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46903 * 110.99838 * 2 1 4 4 C 1.39837 * 111.00040 * 123.95175 * 2 1 3 5 5 C 1.39117 * 120.07935 * 297.64713 * 4 2 1 6 6 F 1.35100 * 120.05722 * 359.95925 * 5 4 2 7 7 C 1.38240 * 119.88836 * 179.97438 * 5 4 2 8 8 C 1.38336 * 120.04944 * 0.02562 * 7 5 4 9 9 C 1.38227 * 120.15805 * 359.71063 * 8 7 5 10 10 C 1.38198 * 120.11367 * 0.56702 * 9 8 7 11 11 C 1.50699 * 120.02794 * 179.71824 * 10 9 8 12 12 C 1.50694 * 115.55372 * 100.15501 * 11 10 9 13 13 H 1.08000 * 120.00464 * 144.38972 * 12 11 10 14 14 C 1.37877 * 119.99933 * 324.39075 * 12 11 10 15 15 N 1.31511 * 120.00126 * 4.14152 * 14 12 11 16 16 Si 1.86804 * 120.00038 * 184.14103 * 14 12 11 17 17 H 1.48497 * 109.47040 * 359.97438 * 16 14 12 18 18 H 1.48496 * 109.47232 * 120.00078 * 16 14 12 19 19 H 1.48501 * 109.47034 * 240.00332 * 16 14 12 20 20 C 1.53004 * 117.49766 * 314.45093 * 11 10 9 21 21 C 1.52998 * 59.99951 * 252.51014 * 20 11 10 22 22 H 1.09001 * 109.47521 * 302.11186 * 1 2 3 23 23 H 1.09002 * 109.47448 * 62.11354 * 1 2 3 24 24 H 1.08998 * 109.47171 * 182.10770 * 1 2 3 25 25 H 1.09002 * 109.46842 * 187.66539 * 3 2 1 26 26 H 1.08997 * 109.46996 * 307.66239 * 3 2 1 27 27 H 1.08996 * 109.47214 * 67.66356 * 3 2 1 28 28 H 1.07998 * 119.97739 * 179.97438 * 7 5 4 29 29 H 1.07997 * 119.92206 * 180.02562 * 8 7 5 30 30 H 1.08000 * 119.94572 * 180.27931 * 9 8 7 31 31 H 0.97000 * 120.00335 * 175.00448 * 15 14 12 32 32 H 1.09005 * 117.49702 * 359.97438 * 20 11 10 33 33 H 1.08994 * 117.50199 * 145.01988 * 20 11 10 34 34 H 1.09001 * 117.50137 * 252.51139 * 21 20 11 35 35 H 1.09004 * 117.49930 * 107.48948 * 21 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9701 -0.7291 1.0829 5 6 1.6985 -0.3199 2.3845 6 9 0.9506 0.7834 2.6048 7 6 2.1955 -1.0439 3.4521 8 6 2.9620 -2.1732 3.2264 9 6 3.2286 -2.5846 1.9340 10 6 2.7399 -1.8626 0.8618 11 6 3.0370 -2.3094 -0.5465 12 6 1.9297 -3.0635 -1.2364 13 1 1.7658 -2.9328 -2.2959 14 6 1.1258 -3.9205 -0.5151 15 7 1.2718 -4.0186 0.7882 16 14 -0.1710 -4.9423 -1.3891 17 1 -0.1334 -4.6500 -2.8445 18 1 0.1024 -6.3848 -1.1663 19 1 -1.5132 -4.6040 -0.8512 20 6 4.4765 -2.7143 -0.8702 21 6 3.9133 -1.3970 -1.4070 22 1 -0.3634 0.5463 0.8704 23 1 -0.3634 0.4807 -0.9083 24 1 -0.3633 -1.0269 0.0378 25 1 3.0765 1.3457 -0.1371 26 1 1.5394 1.9357 -0.8135 27 1 1.7610 1.8506 0.9505 28 1 1.9858 -0.7273 4.4631 29 1 3.3489 -2.7375 4.0620 30 1 3.8236 -3.4693 1.7618 31 1 0.6599 -4.5656 1.3050 32 1 5.2087 -2.6571 -0.0647 33 1 4.6229 -3.5264 -1.5823 34 1 3.6889 -1.3424 -2.4723 35 1 4.2748 -0.4735 -0.9546 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260301203.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:01 Heat of formation + Delta-G solvation = 10.291852 kcal Electronic energy + Delta-G solvation = -19201.413819 eV Core-core repulsion = 16307.689793 eV Total energy + Delta-G solvation = -2893.724026 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.84870 -40.55620 -37.67594 -37.05103 -34.04238 -30.93022 -30.43363 -28.42320 -27.51821 -25.16736 -23.99638 -22.94518 -21.86163 -20.96228 -18.80777 -17.63422 -17.30715 -16.91551 -16.63770 -16.45965 -15.72683 -15.53537 -15.25496 -14.80385 -14.63126 -14.20299 -13.67172 -13.18176 -13.05881 -12.95380 -12.90373 -12.71072 -12.53222 -12.46571 -12.19749 -12.13306 -11.95329 -11.34371 -10.92812 -10.57518 -10.04760 -9.33727 -9.23237 -9.13443 -7.80789 -6.03564 0.55188 0.73098 1.40680 1.46188 1.54104 2.47823 2.99094 3.13339 3.18183 3.48517 3.79458 4.06069 4.29001 4.37351 4.46087 4.52671 4.59736 4.65435 4.67087 4.77568 4.89448 4.95416 5.00845 5.06985 5.09790 5.16548 5.29903 5.46226 5.55786 5.64377 5.79047 5.88887 5.97332 6.18050 6.27127 6.50441 6.72671 6.93398 7.54035 9.02410 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.010492 C = 0.010451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.793903 B = 2668.121630 C = 2678.623661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.492 5.492 3 C 0.026 3.974 4 C 0.043 3.957 5 C 0.030 3.970 6 F -0.153 7.153 7 C -0.172 4.172 8 C -0.108 4.108 9 C -0.071 4.071 10 C 0.067 3.933 11 C 0.069 3.931 12 C -0.479 4.479 13 H 0.047 0.953 14 C 0.034 3.966 15 N -0.887 5.887 16 Si 0.938 3.062 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.288 1.288 20 C -0.208 4.208 21 C -0.166 4.166 22 H 0.027 0.973 23 H 0.083 0.917 24 H 0.041 0.959 25 H 0.064 0.936 26 H 0.085 0.915 27 H 0.027 0.973 28 H 0.142 0.858 29 H 0.147 0.853 30 H 0.109 0.891 31 H 0.256 0.744 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 6.333 3.141 7.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.212 5.212 3 C -0.120 4.120 4 C -0.052 4.052 5 C 0.008 3.992 6 F -0.132 7.132 7 C -0.191 4.191 8 C -0.126 4.126 9 C -0.090 4.090 10 C 0.066 3.934 11 C 0.069 3.931 12 C -0.516 4.516 13 H 0.066 0.934 14 C -0.167 4.167 15 N -0.524 5.524 16 Si 0.765 3.235 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.214 1.214 20 C -0.246 4.246 21 C -0.203 4.203 22 H 0.045 0.955 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.083 0.917 26 H 0.103 0.897 27 H 0.046 0.954 28 H 0.160 0.840 29 H 0.164 0.836 30 H 0.127 0.873 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.188 6.009 2.827 6.992 hybrid contribution -1.378 -0.260 0.295 1.433 sum 0.810 5.749 3.122 6.592 Atomic orbital electron populations 1.22256 0.86669 1.00847 1.00869 1.59346 1.07885 1.13470 1.40536 1.22495 1.00803 0.87742 1.00986 1.18622 1.02045 0.97656 0.86850 1.18590 0.98342 0.86904 0.95334 1.91324 1.74885 1.51392 1.95599 1.20992 1.02338 0.97851 0.97961 1.21043 0.98499 0.95937 0.97131 1.20747 0.99153 0.97184 0.91933 1.18949 0.90596 0.88921 0.94947 1.17559 0.89070 0.96989 0.89478 1.20556 1.14791 1.22241 0.94035 0.93436 1.25447 0.98489 0.97187 0.95546 1.70081 1.37009 1.40014 1.05316 0.85818 0.79540 0.79015 0.79100 1.19795 1.20977 1.21417 1.23152 0.99959 0.98131 1.03363 1.22643 1.06111 0.92758 0.98813 0.95473 0.89793 0.94002 0.91678 0.89660 0.95402 0.83977 0.83576 0.87255 0.93452 0.90310 0.90741 0.90743 0.90472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.57 9.21 127.69 1.18 2.75 16 2 N -0.49 -19.90 4.09 -744.83 -3.05 -22.95 16 3 C 0.03 0.87 9.37 127.69 1.20 2.07 16 4 C 0.04 1.88 4.67 38.21 0.18 2.06 16 5 C 0.03 1.19 6.68 22.48 0.15 1.34 16 6 F -0.15 -5.87 13.46 44.97 0.61 -5.27 16 7 C -0.17 -6.22 10.02 22.29 0.22 -6.00 16 8 C -0.11 -3.91 10.04 22.29 0.22 -3.69 16 9 C -0.07 -3.02 7.49 22.26 0.17 -2.85 16 10 C 0.07 3.06 3.48 -19.74 -0.07 2.99 16 11 C 0.07 3.28 1.48 -53.67 -0.08 3.20 16 12 C -0.48 -25.14 9.05 25.60 0.23 -24.91 16 13 H 0.05 2.56 7.82 -2.91 -0.02 2.54 16 14 C 0.03 1.78 5.39 84.66 0.46 2.24 16 15 N -0.89 -46.85 10.01 21.45 0.21 -46.63 16 16 Si 0.94 42.65 29.54 68.60 2.03 44.68 16 17 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 20 C -0.21 -8.84 9.54 30.59 0.29 -8.55 16 21 C -0.17 -6.92 9.63 30.59 0.29 -6.62 16 22 H 0.03 1.00 6.42 -2.39 -0.02 0.98 16 23 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 24 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 25 H 0.06 2.09 7.87 -2.39 -0.02 2.07 16 26 H 0.08 2.39 8.11 -2.39 -0.02 2.37 16 27 H 0.03 0.91 6.09 -2.39 -0.01 0.89 16 28 H 0.14 4.24 8.06 -2.91 -0.02 4.22 16 29 H 0.15 4.24 8.06 -2.91 -0.02 4.21 16 30 H 0.11 4.72 7.91 -2.91 -0.02 4.69 16 31 H 0.26 13.25 8.32 -92.71 -0.77 12.48 16 32 H 0.08 3.08 7.99 -2.38 -0.02 3.07 16 33 H 0.07 3.18 8.14 -2.39 -0.02 3.16 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.08 3.01 7.87 -2.38 -0.02 2.99 16 Total: -1.00 -56.17 291.50 5.31 -50.86 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 1.07 Total: 15.30 kcal Atomic # 6 Polarization: -40.42 SS G_CDS: 4.44 Total: -35.98 kcal Atomic # 7 Polarization: -66.75 SS G_CDS: -2.83 Total: -69.58 kcal Atomic # 9 Polarization: -5.87 SS G_CDS: 0.61 Total: -5.27 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 2.03 Total: 44.68 kcal Total: -56.17 5.31 -50.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260301203.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.148 kcal (2) G-P(sol) polarization free energy of solvation -56.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds