Wall clock time and date at job start Mon Mar 30 2020 07:38:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48508 * 109.47045 * 269.99974 * 3 2 1 5 5 H 1.48497 * 109.46965 * 30.00159 * 3 2 1 6 6 H 1.48497 * 109.46977 * 150.00086 * 3 2 1 7 7 C 1.37878 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52149 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27584 * 182.44487 * 10 9 7 12 12 N 1.46842 * 109.52697 * 59.18214 * 11 10 9 13 13 C 1.46897 * 111.00266 * 174.16262 * 12 11 10 14 14 C 1.52997 * 109.47178 * 169.99942 * 13 12 11 15 15 C 1.50708 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.34506 * 125.79179 * 90.01288 * 15 14 13 17 17 C 1.41388 * 106.83998 * 179.97438 * 16 15 14 18 18 C 1.34515 * 106.83843 * 359.97438 * 17 16 15 19 19 O 1.34304 * 108.42331 * 0.02562 * 18 17 16 20 20 C 1.46853 * 111.19584 * 298.25556 * 12 11 10 21 21 C 1.53037 * 109.52282 * 61.74248 * 20 12 11 22 22 H 0.96998 * 120.00614 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.57683 * 300.16031 * 9 7 2 24 24 H 1.08999 * 109.50768 * 62.50159 * 10 9 7 25 25 H 1.08997 * 109.53581 * 302.40155 * 10 9 7 26 26 H 1.09003 * 109.46277 * 299.15670 * 11 10 9 27 27 H 1.09006 * 109.44882 * 179.19067 * 11 10 9 28 28 H 1.08998 * 109.47367 * 49.99455 * 13 12 11 29 29 H 1.09005 * 109.46608 * 289.99512 * 13 12 11 30 30 H 1.08998 * 109.47369 * 59.99514 * 14 13 12 31 31 H 1.09005 * 109.46999 * 299.99330 * 14 13 12 32 32 H 1.08000 * 126.58117 * 359.96027 * 16 15 14 33 33 H 1.08001 * 126.57691 * 180.26094 * 17 16 15 34 34 H 1.07998 * 125.78442 * 180.02562 * 18 17 16 35 35 H 1.08992 * 109.46232 * 181.75674 * 20 12 11 36 36 H 1.09003 * 109.46384 * 301.72972 * 20 12 11 37 37 H 1.09001 * 109.50274 * 180.88041 * 21 20 12 38 38 H 1.08997 * 109.50626 * 60.76478 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4752 -4.9851 -0.0622 12 7 0.6546 -5.0186 -1.2794 13 6 0.0083 -6.3276 -1.4427 14 6 -1.0241 -6.2497 -2.5692 15 6 -1.6875 -7.5925 -2.7363 16 6 -2.7997 -8.0049 -2.1021 17 6 -3.0664 -9.3176 -2.5545 18 6 -2.1015 -9.6286 -3.4387 19 8 -1.2689 -8.5801 -3.5447 20 6 -0.3393 -3.9375 -1.2796 21 6 0.3764 -2.5850 -1.2544 22 1 -0.4851 0.8400 0.0004 23 1 0.6220 -2.5576 0.8877 24 1 2.8422 -3.6327 0.9108 25 1 2.9004 -3.5838 -0.8678 26 1 0.8310 -5.0712 0.8129 27 1 2.1808 -5.8159 -0.0768 28 1 -0.4883 -6.6062 -0.5133 29 1 0.7611 -7.0759 -1.6909 30 1 -0.5274 -5.9711 -3.4986 31 1 -1.7768 -5.5014 -2.3210 32 1 -3.3778 -7.4415 -1.3847 33 1 -3.8897 -9.9478 -2.2521 34 1 -2.0116 -10.5630 -3.9727 35 1 -0.9518 -4.0075 -2.1784 36 1 -0.9751 -4.0284 -0.3989 37 1 -0.3617 -1.7830 -1.2388 38 1 1.0018 -2.4875 -2.1418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260302007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:57 Heat of formation + Delta-G solvation = 6.844249 kcal Electronic energy + Delta-G solvation = -18015.488715 eV Core-core repulsion = 15245.075495 eV Total energy + Delta-G solvation = -2770.413220 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.58813 -38.42428 -34.72572 -33.09973 -32.41469 -30.64628 -29.81094 -27.62101 -25.47658 -23.16239 -22.07562 -21.78082 -21.05530 -20.05108 -18.58046 -17.37442 -16.40665 -16.05856 -15.38230 -14.76887 -14.48784 -14.33079 -13.80967 -13.32086 -12.87776 -12.76098 -12.69878 -12.67857 -12.33107 -11.95499 -11.59720 -11.30259 -10.92302 -10.86801 -10.72659 -10.42758 -10.18659 -9.97975 -9.95629 -9.40691 -8.93727 -8.70388 -8.45570 -8.26839 -7.74900 -5.95242 -4.00339 1.68894 2.56429 2.96144 3.33062 3.39661 3.43039 4.35031 4.47305 4.79790 4.96155 4.97091 5.18384 5.24390 5.35346 5.60807 5.67088 5.77259 5.78994 5.87775 5.99131 6.02742 6.12556 6.15993 6.22713 6.33091 6.46685 6.61974 6.64949 6.87677 7.09626 7.11329 7.18154 7.44930 7.62628 7.68752 7.84784 8.07242 8.17809 8.50796 9.03296 9.63959 11.10972 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.053284 B = 0.004018 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.364216 B = 6967.196409 C = 7219.408709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.060 3.940 3 Si 0.889 3.111 4 H -0.281 1.281 5 H -0.288 1.288 6 H -0.275 1.275 7 C -0.510 4.510 8 H 0.054 0.946 9 C 0.047 3.953 10 C -0.106 4.106 11 C 0.061 3.939 12 N -0.535 5.535 13 C 0.061 3.939 14 C -0.047 4.047 15 C 0.003 3.997 16 C -0.217 4.217 17 C -0.213 4.213 18 C -0.051 4.051 19 O -0.175 6.175 20 C 0.048 3.952 21 C -0.104 4.104 22 H 0.259 0.741 23 H 0.020 0.980 24 H 0.050 0.950 25 H 0.057 0.943 26 H 0.024 0.976 27 H 0.057 0.943 28 H 0.031 0.969 29 H 0.071 0.929 30 H 0.091 0.909 31 H 0.100 0.900 32 H 0.146 0.854 33 H 0.145 0.855 34 H 0.200 0.800 35 H 0.061 0.939 36 H 0.023 0.977 37 H 0.092 0.908 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.738 -15.827 -4.689 17.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.140 4.140 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.214 1.214 6 H -0.200 1.200 7 C -0.548 4.548 8 H 0.072 0.928 9 C 0.029 3.971 10 C -0.144 4.144 11 C -0.067 4.067 12 N -0.260 5.260 13 C -0.068 4.068 14 C -0.084 4.084 15 C -0.048 4.048 16 C -0.236 4.236 17 C -0.233 4.233 18 C -0.119 4.119 19 O -0.072 6.072 20 C -0.079 4.079 21 C -0.143 4.143 22 H 0.069 0.931 23 H 0.038 0.962 24 H 0.068 0.932 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.076 0.924 28 H 0.049 0.951 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.164 0.836 33 H 0.163 0.837 34 H 0.216 0.784 35 H 0.080 0.920 36 H 0.041 0.959 37 H 0.110 0.890 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.315 -15.597 -5.255 17.015 hybrid contribution -0.420 0.561 0.816 1.075 sum -4.735 -15.036 -4.439 16.377 Atomic orbital electron populations 1.69872 1.05859 1.26274 1.51181 1.24967 0.94838 0.98989 0.95228 0.86636 0.79880 0.83659 0.78057 1.20728 1.21358 1.20007 1.21217 0.92893 0.90681 1.50010 0.92759 1.18691 0.92724 0.91745 0.93977 1.21683 0.98720 0.93688 1.00337 1.22116 0.95787 0.99357 0.89393 1.62104 1.23561 1.01745 1.38603 1.22052 0.95603 0.93022 0.96092 1.20402 0.98627 0.88140 1.01205 1.22598 0.96567 0.91327 0.94285 1.21619 0.99687 0.96935 1.05383 1.21823 1.02125 0.97510 1.01802 1.23976 0.92299 0.92259 1.03347 1.84040 1.47450 1.21977 1.53690 1.22426 0.93406 0.93235 0.98818 1.21669 1.00207 0.92966 0.99430 0.93129 0.96163 0.93164 0.92434 0.95732 0.92436 0.95062 0.91039 0.89090 0.88198 0.83578 0.83675 0.78355 0.92028 0.95874 0.88952 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.38 11.37 55.43 0.63 -24.75 16 2 C 0.06 1.67 5.31 -17.82 -0.09 1.58 16 3 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.28 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.04 8.56 -34.44 -0.29 -14.33 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.05 1.17 2.16 -91.65 -0.20 0.98 16 10 C -0.11 -2.25 5.32 -26.65 -0.14 -2.39 16 11 C 0.06 1.11 5.42 -3.84 -0.02 1.09 16 12 N -0.53 -9.49 4.81 -234.67 -1.13 -10.62 16 13 C 0.06 0.89 5.25 -3.83 -0.02 0.87 16 14 C -0.05 -0.62 5.00 -27.88 -0.14 -0.76 16 15 C 0.00 0.04 6.57 -35.62 -0.23 -0.19 16 16 C -0.22 -2.65 10.81 -39.70 -0.43 -3.08 16 17 C -0.21 -2.27 10.91 -39.70 -0.43 -2.70 16 18 C -0.05 -0.52 12.09 29.42 0.36 -0.17 16 19 O -0.18 -2.28 10.65 5.70 0.06 -2.22 16 20 C 0.05 0.92 4.85 -3.83 -0.02 0.90 16 21 C -0.10 -2.45 5.12 -26.65 -0.14 -2.58 16 22 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 23 H 0.02 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 25 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.06 0.93 8.12 -51.93 -0.42 0.51 16 28 H 0.03 0.46 8.08 -51.93 -0.42 0.04 16 29 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.10 1.30 6.21 -51.93 -0.32 0.97 16 32 H 0.15 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.15 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.20 1.22 8.06 -52.49 -0.42 0.79 16 35 H 0.06 1.05 5.81 -51.93 -0.30 0.75 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 2.40 6.18 -51.93 -0.32 2.08 16 38 H 0.04 1.06 8.14 -51.93 -0.42 0.64 16 LS Contribution 304.83 15.07 4.59 4.59 Total: -1.00 -29.19 304.83 -8.65 -37.84 By element: Atomic # 1 Polarization: 5.61 SS G_CDS: -5.98 Total: -0.37 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -1.81 Total: -20.79 kcal Atomic # 7 Polarization: -34.87 SS G_CDS: -0.50 Total: -35.37 kcal Atomic # 8 Polarization: -2.28 SS G_CDS: 0.06 Total: -2.22 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.59 Total: 4.59 kcal Total: -29.19 -8.65 -37.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.686 kcal (2) G-P(sol) polarization free energy of solvation -29.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.842 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds