Wall clock time and date at job start Mon Mar 30 2020 07:38:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86804 * 119.99793 * 2 1 4 4 H 1.48508 * 109.47045 * 269.99974 * 3 2 1 5 5 H 1.48497 * 109.46965 * 30.00159 * 3 2 1 6 6 H 1.48497 * 109.46977 * 150.00086 * 3 2 1 7 7 C 1.37878 * 120.00171 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99788 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99881 * 359.97438 * 7 2 1 10 10 C 1.53122 * 109.52149 * 180.02562 * 9 7 2 11 11 C 1.53039 * 109.27584 * 182.44487 * 10 9 7 12 12 N 1.46842 * 109.52697 * 59.18214 * 11 10 9 13 13 C 1.46897 * 111.00266 * 174.16262 * 12 11 10 14 14 C 1.52997 * 109.47178 * 169.99942 * 13 12 11 15 15 C 1.50708 * 109.47127 * 180.02562 * 14 13 12 16 16 C 1.34506 * 125.79179 * 90.01288 * 15 14 13 17 17 C 1.41388 * 106.83998 * 179.97438 * 16 15 14 18 18 C 1.34515 * 106.83843 * 359.97438 * 17 16 15 19 19 O 1.34304 * 108.42331 * 0.02562 * 18 17 16 20 20 C 1.46853 * 111.19584 * 298.25556 * 12 11 10 21 21 C 1.53037 * 109.52282 * 61.74248 * 20 12 11 22 22 H 0.96998 * 120.00614 * 359.97438 * 1 2 3 23 23 H 1.09002 * 109.57683 * 300.16031 * 9 7 2 24 24 H 1.08999 * 109.50768 * 62.50159 * 10 9 7 25 25 H 1.08997 * 109.53581 * 302.40155 * 10 9 7 26 26 H 1.09003 * 109.46277 * 299.15670 * 11 10 9 27 27 H 1.09006 * 109.44882 * 179.19067 * 11 10 9 28 28 H 1.08998 * 109.47367 * 49.99455 * 13 12 11 29 29 H 1.09005 * 109.46608 * 289.99512 * 13 12 11 30 30 H 1.08998 * 109.47369 * 59.99514 * 14 13 12 31 31 H 1.09005 * 109.46999 * 299.99330 * 14 13 12 32 32 H 1.08000 * 126.58117 * 359.96027 * 16 15 14 33 33 H 1.08001 * 126.57691 * 180.26094 * 17 16 15 34 34 H 1.07998 * 125.78442 * 180.02562 * 18 17 16 35 35 H 1.08992 * 109.46232 * 181.75674 * 20 12 11 36 36 H 1.09003 * 109.46384 * 301.72972 * 20 12 11 37 37 H 1.09001 * 109.50274 * 180.88041 * 21 20 12 38 38 H 1.08997 * 109.50626 * 60.76478 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2451 -3.6638 -0.0005 11 6 1.4752 -4.9851 -0.0622 12 7 0.6546 -5.0186 -1.2794 13 6 0.0083 -6.3276 -1.4427 14 6 -1.0241 -6.2497 -2.5692 15 6 -1.6875 -7.5925 -2.7363 16 6 -2.7997 -8.0049 -2.1021 17 6 -3.0664 -9.3176 -2.5545 18 6 -2.1015 -9.6286 -3.4387 19 8 -1.2689 -8.5801 -3.5447 20 6 -0.3393 -3.9375 -1.2796 21 6 0.3764 -2.5850 -1.2544 22 1 -0.4851 0.8400 0.0004 23 1 0.6220 -2.5576 0.8877 24 1 2.8422 -3.6327 0.9108 25 1 2.9004 -3.5838 -0.8678 26 1 0.8310 -5.0712 0.8129 27 1 2.1808 -5.8159 -0.0768 28 1 -0.4883 -6.6062 -0.5133 29 1 0.7611 -7.0759 -1.6909 30 1 -0.5274 -5.9711 -3.4986 31 1 -1.7768 -5.5014 -2.3210 32 1 -3.3778 -7.4415 -1.3847 33 1 -3.8897 -9.9478 -2.2521 34 1 -2.0116 -10.5630 -3.9727 35 1 -0.9518 -4.0075 -2.1784 36 1 -0.9751 -4.0284 -0.3989 37 1 -0.3617 -1.7830 -1.2388 38 1 1.0018 -2.4875 -2.1418 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260302007.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:56 Heat of formation + Delta-G solvation = -10.025001 kcal Electronic energy + Delta-G solvation = -18016.220221 eV Core-core repulsion = 15245.075495 eV Total energy + Delta-G solvation = -2771.144726 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -43.45719 -39.95779 -36.32995 -34.38458 -33.70487 -32.16358 -31.46239 -28.87554 -27.15590 -24.71574 -23.68968 -22.67226 -22.41820 -21.08443 -20.32971 -18.46312 -18.22432 -17.13471 -16.74938 -16.31359 -15.98013 -15.68399 -15.04268 -14.89488 -14.40253 -14.36632 -14.00676 -13.71924 -13.49567 -13.30308 -13.03460 -12.86556 -12.67180 -12.56842 -12.22558 -12.06944 -11.96975 -11.83141 -11.31121 -10.83597 -10.79380 -10.61646 -10.35403 -9.34862 -9.18654 -8.06502 -6.19604 0.81929 1.42163 1.42901 1.52870 1.72229 2.12111 2.45147 3.04426 3.20455 3.82834 4.00321 4.07031 4.16951 4.23551 4.30947 4.33397 4.46677 4.52806 4.60043 4.75749 4.79456 4.89902 4.96155 4.97952 5.01939 5.07614 5.14007 5.25439 5.26421 5.36684 5.58221 5.63975 5.64796 6.02031 6.03520 6.24225 6.29395 6.31580 6.42850 6.91763 7.47995 8.98028 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.053284 B = 0.004018 C = 0.003878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 525.364216 B = 6967.196409 C = 7219.408709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.012 3.988 3 Si 0.952 3.048 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.270 1.270 7 C -0.534 4.534 8 H 0.050 0.950 9 C 0.042 3.958 10 C -0.100 4.100 11 C 0.066 3.934 12 N -0.541 5.541 13 C 0.066 3.934 14 C -0.039 4.039 15 C -0.021 4.021 16 C -0.224 4.224 17 C -0.227 4.227 18 C -0.045 4.045 19 O -0.193 6.193 20 C 0.060 3.940 21 C -0.096 4.096 22 H 0.260 0.740 23 H -0.012 1.012 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.022 0.978 27 H 0.086 0.914 28 H 0.034 0.966 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.152 0.848 33 H 0.168 0.832 34 H 0.238 0.762 35 H 0.084 0.916 36 H 0.016 0.984 37 H 0.062 0.938 38 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.691 -17.464 -5.278 18.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.202 1.202 5 H -0.209 1.209 6 H -0.194 1.194 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.024 3.976 10 C -0.138 4.138 11 C -0.062 4.062 12 N -0.266 5.266 13 C -0.061 4.061 14 C -0.076 4.076 15 C -0.071 4.071 16 C -0.243 4.243 17 C -0.246 4.246 18 C -0.111 4.111 19 O -0.089 6.089 20 C -0.067 4.067 21 C -0.135 4.135 22 H 0.069 0.931 23 H 0.006 0.994 24 H 0.072 0.928 25 H 0.070 0.930 26 H 0.041 0.959 27 H 0.104 0.896 28 H 0.052 0.948 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.117 0.883 32 H 0.169 0.831 33 H 0.186 0.814 34 H 0.254 0.746 35 H 0.102 0.898 36 H 0.034 0.966 37 H 0.080 0.920 38 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -4.265 -17.247 -5.843 18.703 hybrid contribution -0.463 1.006 0.999 1.491 sum -4.728 -16.242 -4.845 17.596 Atomic orbital electron populations 1.70008 1.07089 1.27020 1.51567 1.25728 0.95692 1.02278 0.94887 0.85644 0.78742 0.79578 0.78206 1.20156 1.20937 1.19426 1.21593 0.92983 0.92307 1.50290 0.93176 1.18678 0.93211 0.92563 0.93160 1.21547 0.98011 0.93961 1.00241 1.22051 0.96112 0.98404 0.89614 1.62043 1.23469 1.02815 1.38289 1.22056 0.96106 0.91126 0.96823 1.20238 0.98155 0.88786 1.00445 1.22488 0.97404 0.91562 0.95638 1.21897 0.99396 0.97864 1.05130 1.22171 1.03176 0.97191 1.02061 1.24807 0.91143 0.92497 1.02676 1.84027 1.48361 1.22628 1.53919 1.22203 0.93264 0.91595 0.99646 1.21434 0.99204 0.94781 0.98043 0.93101 0.99369 0.92839 0.92955 0.95942 0.89563 0.94762 0.90099 0.89327 0.88261 0.83051 0.81408 0.74571 0.89772 0.96572 0.91974 0.95017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.37 11.37 21.45 0.24 -53.13 16 2 C 0.01 0.70 5.31 84.65 0.45 1.15 16 3 Si 0.95 44.15 29.54 68.60 2.03 46.18 16 4 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.53 -30.02 8.56 25.60 0.22 -29.80 16 8 H 0.05 2.78 7.74 -2.91 -0.02 2.76 16 9 C 0.04 2.17 2.16 -11.46 -0.02 2.14 16 10 C -0.10 -4.21 5.32 30.65 0.16 -4.05 16 11 C 0.07 2.31 5.42 86.33 0.47 2.78 16 12 N -0.54 -18.54 4.81 -896.36 -4.31 -22.84 16 13 C 0.07 1.83 5.25 86.30 0.45 2.29 16 14 C -0.04 -0.98 5.00 29.85 0.15 -0.83 16 15 C -0.02 -0.51 6.57 24.83 0.16 -0.35 16 16 C -0.22 -5.09 10.81 22.19 0.24 -4.85 16 17 C -0.23 -4.25 10.91 22.19 0.24 -4.01 16 18 C -0.04 -0.78 12.09 66.97 0.81 0.03 16 19 O -0.19 -4.62 10.65 -2.51 -0.03 -4.65 16 20 C 0.06 2.30 4.85 86.32 0.42 2.72 16 21 C -0.10 -4.62 5.12 30.65 0.16 -4.46 16 22 H 0.26 14.39 8.31 -92.71 -0.77 13.62 16 23 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 24 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 25 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 26 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.09 2.56 8.12 -2.38 -0.02 2.54 16 28 H 0.03 0.94 8.08 -2.39 -0.02 0.92 16 29 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 30 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.10 2.46 6.21 -2.38 -0.01 2.45 16 32 H 0.15 3.15 8.06 -2.91 -0.02 3.12 16 33 H 0.17 2.24 8.06 -2.91 -0.02 2.22 16 34 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 35 H 0.08 2.82 5.81 -2.39 -0.01 2.80 16 36 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.06 3.35 6.18 -2.39 -0.01 3.33 16 38 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -63.33 304.83 2.86 -60.47 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: 1.02 Total: 11.22 kcal Atomic # 6 Polarization: -41.15 SS G_CDS: 3.91 Total: -37.25 kcal Atomic # 7 Polarization: -71.91 SS G_CDS: -4.06 Total: -75.97 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.03 Total: -4.65 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -63.33 2.86 -60.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260302007.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.445 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.888 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.470 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds