Wall clock time and date at job start Mon Mar 30 2020 07:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48492 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46872 * 300.00142 * 3 2 1 6 6 H 1.48497 * 109.46879 * 59.99874 * 3 2 1 7 7 C 1.37881 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99970 * 185.39970 * 7 2 1 9 9 C 1.50698 * 120.00125 * 5.39757 * 7 2 1 10 10 H 1.08997 * 109.47084 * 325.99430 * 9 7 2 11 11 C 1.52999 * 109.47002 * 205.99646 * 9 7 2 12 12 N 1.46893 * 109.47531 * 65.42172 * 11 9 7 13 13 C 1.50701 * 109.47205 * 85.99222 * 9 7 2 14 14 C 1.34514 * 125.78722 * 240.00174 * 13 9 7 15 15 C 1.41386 * 106.83635 * 180.02562 * 14 13 9 16 16 C 1.34513 * 106.84428 * 359.97438 * 15 14 13 17 17 C 1.50698 * 125.79170 * 180.02562 * 16 15 14 18 18 C 1.54890 * 110.59805 * 123.31751 * 17 16 15 19 19 C 1.54892 * 102.74598 * 156.67815 * 18 17 16 20 20 C 1.54262 * 104.19537 * 322.05750 * 19 18 17 21 21 C 1.53871 * 106.60184 * 23.61086 * 20 19 18 22 22 O 1.34302 * 108.41886 * 0.26545 * 16 15 14 23 23 H 0.96999 * 119.99555 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46557 * 185.42536 * 11 9 7 25 25 H 1.09003 * 109.46609 * 305.41383 * 11 9 7 26 26 H 1.00899 * 111.00078 * 174.13143 * 12 11 9 27 27 H 1.00899 * 110.99764 * 298.07607 * 12 11 9 28 28 H 1.07990 * 126.58206 * 0.05181 * 14 13 9 29 29 H 1.07998 * 126.57928 * 179.97438 * 15 14 13 30 30 H 1.09001 * 110.43388 * 0.70073 * 17 16 15 31 31 H 1.09003 * 110.75829 * 274.99077 * 18 17 16 32 32 H 1.08998 * 110.75628 * 38.36560 * 18 17 16 33 33 H 1.09006 * 110.48503 * 203.38048 * 19 18 17 34 34 H 1.09000 * 110.48869 * 80.73728 * 19 18 17 35 35 H 1.09002 * 110.03650 * 264.32715 * 20 19 18 36 36 H 1.08999 * 110.07431 * 142.92123 * 20 19 18 37 37 H 1.09002 * 110.03815 * 240.71790 * 21 20 19 38 38 H 1.08996 * 110.03409 * 119.27917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0809 -1.1963 0.0875 9 6 1.2560 -2.4962 -0.1239 10 1 0.2926 -2.4105 0.3787 11 6 2.0716 -3.6167 0.5245 12 7 2.1754 -3.3736 1.9695 13 6 1.0362 -2.8132 -1.5807 14 6 -0.1578 -2.9688 -2.1803 15 6 0.1012 -3.2549 -3.5405 16 6 1.4379 -3.2564 -3.6908 17 6 2.1800 -3.5149 -4.9767 18 6 3.1141 -2.3265 -5.3151 19 6 4.1777 -2.9786 -6.2330 20 6 4.4069 -4.3734 -5.6151 21 6 3.1367 -4.7144 -4.8163 22 8 1.9992 -2.9938 -2.4992 23 1 -0.4849 0.8401 0.0004 24 1 1.5773 -4.5726 0.3514 25 1 3.0697 -3.6393 0.0871 26 1 2.6266 -4.1470 2.4347 27 1 2.6582 -2.5077 2.1567 28 1 -1.1280 -2.8900 -1.7127 29 1 -0.6332 -3.4372 -4.3111 30 1 1.4785 -3.6928 -5.7917 31 1 2.5697 -1.5468 -5.8479 32 1 3.5755 -1.9284 -4.4114 33 1 5.1007 -2.3988 -6.2190 34 1 3.7989 -3.0699 -7.2510 35 1 5.2707 -4.3502 -4.9507 36 1 4.5618 -5.1107 -6.4028 37 1 3.3840 -4.8565 -3.7643 38 1 2.6746 -5.6166 -5.2169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260314997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:46 Heat of formation + Delta-G solvation = -15.404060 kcal Electronic energy + Delta-G solvation = -18529.076126 eV Core-core repulsion = 15757.698147 eV Total energy + Delta-G solvation = -2771.377979 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.52790 -37.74891 -35.19705 -32.34639 -31.95008 -30.67472 -28.73056 -28.55209 -25.62471 -24.24130 -21.36339 -20.73936 -20.30923 -19.82936 -18.80757 -16.77814 -16.04365 -15.47347 -15.05198 -14.79271 -14.60138 -14.01428 -13.45526 -13.22865 -13.15790 -12.74392 -12.57319 -11.78329 -11.73205 -11.29313 -11.18854 -11.12559 -11.07561 -10.95927 -10.81026 -10.68460 -10.55945 -10.47284 -10.34520 -9.54061 -9.26842 -8.79637 -8.55839 -7.79326 -7.10549 -6.10491 -4.16152 2.79741 3.25801 3.34364 3.37458 3.74488 3.96226 4.37797 4.78878 4.82006 4.87420 5.19828 5.39774 5.56928 5.57924 5.66614 5.68253 5.75983 5.85097 5.99317 5.99996 6.06285 6.14764 6.20905 6.34759 6.36981 6.42574 6.46072 6.52893 6.75606 6.91040 7.07373 7.30201 7.54424 7.64758 7.79588 8.07191 8.16002 8.33726 8.47247 8.89961 9.48566 10.97000 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.007209 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.462089 B = 3883.239691 C = 4325.583269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.514 4.514 8 H 0.056 0.944 9 C 0.106 3.894 10 H 0.092 0.908 11 C 0.077 3.923 12 N -0.842 5.842 13 C 0.070 3.930 14 C -0.248 4.248 15 C -0.205 4.205 16 C -0.053 4.053 17 C -0.001 4.001 18 C -0.121 4.121 19 C -0.124 4.124 20 C -0.123 4.123 21 C -0.120 4.120 22 O -0.170 6.170 23 H 0.263 0.737 24 H 0.045 0.955 25 H 0.013 0.987 26 H 0.320 0.680 27 H 0.349 0.651 28 H 0.134 0.866 29 H 0.128 0.872 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.070 0.930 38 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.508 -7.156 -8.709 12.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.132 4.132 3 Si 0.718 3.282 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.551 4.551 8 H 0.075 0.925 9 C 0.087 3.913 10 H 0.109 0.891 11 C -0.054 4.054 12 N -0.371 5.371 13 C 0.018 3.982 14 C -0.267 4.267 15 C -0.224 4.224 16 C -0.103 4.103 17 C -0.019 4.019 18 C -0.158 4.158 19 C -0.162 4.162 20 C -0.161 4.161 21 C -0.157 4.157 22 O -0.066 6.066 23 H 0.073 0.927 24 H 0.064 0.936 25 H 0.031 0.969 26 H 0.130 0.870 27 H 0.163 0.837 28 H 0.152 0.848 29 H 0.146 0.854 30 H 0.110 0.890 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.089 0.911 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.859 -7.003 -8.670 12.158 hybrid contribution 1.032 1.050 -0.392 1.524 sum 5.891 -5.953 -9.063 12.340 Atomic orbital electron populations 1.69937 1.05978 1.26883 1.48293 1.24998 0.94827 0.99342 0.94031 0.86556 0.80237 0.83696 0.77684 1.19663 1.20938 1.20790 1.20914 0.93053 0.89758 1.51411 0.92530 1.17751 0.99617 0.92753 0.81135 0.89053 1.21748 0.97741 0.98044 0.87856 1.58592 1.61059 1.07075 1.10358 1.23996 0.85089 0.95725 0.93439 1.21339 0.98779 1.12823 0.93778 1.21370 0.94680 1.08878 0.97474 1.21778 0.91955 1.09651 0.86898 1.20367 0.95695 0.95413 0.90474 1.22601 0.96242 0.96983 0.99978 1.22361 0.99026 0.96036 0.98750 1.22129 0.98069 0.96815 0.99067 1.22227 0.95002 0.97364 1.01148 1.83929 1.37475 1.68885 1.16355 0.92707 0.93602 0.96887 0.86987 0.83743 0.84813 0.85367 0.89049 0.91449 0.90521 0.91744 0.91818 0.91874 0.92126 0.91124 0.91842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.06 12.91 55.43 0.72 -24.34 16 2 C 0.07 1.99 5.45 -17.82 -0.10 1.90 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -13.81 7.45 -34.44 -0.26 -14.07 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.11 2.66 2.40 -92.92 -0.22 2.44 16 10 H 0.09 2.54 7.46 -51.93 -0.39 2.15 16 11 C 0.08 1.65 6.19 -3.83 -0.02 1.62 16 12 N -0.84 -16.39 9.57 -10.37 -0.10 -16.49 16 13 C 0.07 1.70 5.81 -35.62 -0.21 1.49 16 14 C -0.25 -5.78 10.78 -39.70 -0.43 -6.21 16 15 C -0.20 -4.19 10.80 -39.70 -0.43 -4.61 16 16 C -0.05 -1.06 5.79 -35.63 -0.21 -1.27 16 17 C 0.00 -0.02 3.31 -90.11 -0.30 -0.31 16 18 C -0.12 -1.76 6.32 -24.74 -0.16 -1.92 16 19 C -0.12 -1.43 6.83 -25.07 -0.17 -1.60 16 20 C -0.12 -1.41 6.80 -25.62 -0.17 -1.59 16 21 C -0.12 -1.62 6.36 -25.61 -0.16 -1.78 16 22 O -0.17 -3.94 10.49 5.70 0.06 -3.88 16 23 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 24 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.32 5.09 9.08 -39.29 -0.36 4.73 16 27 H 0.35 6.95 8.25 -39.29 -0.32 6.63 16 28 H 0.13 3.07 8.06 -52.49 -0.42 2.65 16 29 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 30 H 0.09 1.22 8.12 -51.93 -0.42 0.80 16 31 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.30 8.01 -51.93 -0.42 0.89 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.09 7.73 -51.93 -0.40 0.69 16 38 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 314.16 15.07 4.73 4.73 Total: -1.00 -29.30 314.16 -8.53 -37.82 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: -6.08 Total: 11.83 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: -2.83 Total: -25.91 kcal Atomic # 7 Polarization: -41.45 SS G_CDS: 0.62 Total: -40.83 kcal Atomic # 8 Polarization: -3.94 SS G_CDS: 0.06 Total: -3.88 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.30 -8.53 -37.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.418 kcal (2) G-P(sol) polarization free energy of solvation -29.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds