Wall clock time and date at job start Mon Mar 30 2020 07:36:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86804 * 120.00339 * 2 1 4 4 H 1.48492 * 109.46883 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.46872 * 300.00142 * 3 2 1 6 6 H 1.48497 * 109.46879 * 59.99874 * 3 2 1 7 7 C 1.37881 * 119.99752 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99970 * 185.39970 * 7 2 1 9 9 C 1.50698 * 120.00125 * 5.39757 * 7 2 1 10 10 H 1.08997 * 109.47084 * 325.99430 * 9 7 2 11 11 C 1.52999 * 109.47002 * 205.99646 * 9 7 2 12 12 N 1.46893 * 109.47531 * 65.42172 * 11 9 7 13 13 C 1.50701 * 109.47205 * 85.99222 * 9 7 2 14 14 C 1.34514 * 125.78722 * 240.00174 * 13 9 7 15 15 C 1.41386 * 106.83635 * 180.02562 * 14 13 9 16 16 C 1.34513 * 106.84428 * 359.97438 * 15 14 13 17 17 C 1.50698 * 125.79170 * 180.02562 * 16 15 14 18 18 C 1.54890 * 110.59805 * 123.31751 * 17 16 15 19 19 C 1.54892 * 102.74598 * 156.67815 * 18 17 16 20 20 C 1.54262 * 104.19537 * 322.05750 * 19 18 17 21 21 C 1.53871 * 106.60184 * 23.61086 * 20 19 18 22 22 O 1.34302 * 108.41886 * 0.26545 * 16 15 14 23 23 H 0.96999 * 119.99555 * 359.97438 * 1 2 3 24 24 H 1.09003 * 109.46557 * 185.42536 * 11 9 7 25 25 H 1.09003 * 109.46609 * 305.41383 * 11 9 7 26 26 H 1.00899 * 111.00078 * 174.13143 * 12 11 9 27 27 H 1.00899 * 110.99764 * 298.07607 * 12 11 9 28 28 H 1.07990 * 126.58206 * 0.05181 * 14 13 9 29 29 H 1.07998 * 126.57928 * 179.97438 * 15 14 13 30 30 H 1.09001 * 110.43388 * 0.70073 * 17 16 15 31 31 H 1.09003 * 110.75829 * 274.99077 * 18 17 16 32 32 H 1.08998 * 110.75628 * 38.36560 * 18 17 16 33 33 H 1.09006 * 110.48503 * 203.38048 * 19 18 17 34 34 H 1.09000 * 110.48869 * 80.73728 * 19 18 17 35 35 H 1.09002 * 110.03650 * 264.32715 * 20 19 18 36 36 H 1.08999 * 110.07431 * 142.92123 * 20 19 18 37 37 H 1.09002 * 110.03815 * 240.71790 * 21 20 19 38 38 H 1.08996 * 110.03409 * 119.27917 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.7092 1.3462 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0809 -1.1963 0.0875 9 6 1.2560 -2.4962 -0.1239 10 1 0.2926 -2.4105 0.3787 11 6 2.0716 -3.6167 0.5245 12 7 2.1754 -3.3736 1.9695 13 6 1.0362 -2.8132 -1.5807 14 6 -0.1578 -2.9688 -2.1803 15 6 0.1012 -3.2549 -3.5405 16 6 1.4379 -3.2564 -3.6908 17 6 2.1800 -3.5149 -4.9767 18 6 3.1141 -2.3265 -5.3151 19 6 4.1777 -2.9786 -6.2330 20 6 4.4069 -4.3734 -5.6151 21 6 3.1367 -4.7144 -4.8163 22 8 1.9992 -2.9938 -2.4992 23 1 -0.4849 0.8401 0.0004 24 1 1.5773 -4.5726 0.3514 25 1 3.0697 -3.6393 0.0871 26 1 2.6266 -4.1470 2.4347 27 1 2.6582 -2.5077 2.1567 28 1 -1.1280 -2.8900 -1.7127 29 1 -0.6332 -3.4372 -4.3111 30 1 1.4785 -3.6928 -5.7917 31 1 2.5697 -1.5468 -5.8479 32 1 3.5755 -1.9284 -4.4114 33 1 5.1007 -2.3988 -6.2190 34 1 3.7989 -3.0699 -7.2510 35 1 5.2707 -4.3502 -4.9507 36 1 4.5618 -5.1107 -6.4028 37 1 3.3840 -4.8565 -3.7643 38 1 2.6746 -5.6166 -5.2169 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314997.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:45 Heat of formation + Delta-G solvation = -32.865664 kcal Electronic energy + Delta-G solvation = -18529.833318 eV Core-core repulsion = 15757.698147 eV Total energy + Delta-G solvation = -2772.135171 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.25595 -38.85864 -37.02465 -34.30774 -33.67464 -32.23746 -30.27869 -29.59622 -27.32503 -26.09388 -22.94990 -22.45135 -21.51582 -21.18806 -20.42192 -18.74883 -17.53335 -16.85093 -16.60526 -16.46495 -16.36841 -15.71821 -14.99782 -14.53955 -14.38387 -14.29903 -14.16861 -13.64676 -13.47889 -13.07375 -13.06123 -12.65214 -12.44251 -12.32988 -12.18927 -11.98812 -11.93713 -11.64521 -11.47816 -11.29504 -11.23665 -10.66129 -10.52876 -9.43270 -8.85001 -8.18192 -6.30497 1.11438 1.36264 1.38116 1.48809 1.96030 2.32160 2.39209 3.13391 3.68741 3.74320 3.78730 3.93762 4.26844 4.36790 4.41675 4.53026 4.53997 4.56928 4.64030 4.66792 4.76012 4.82876 4.95068 4.95940 5.08394 5.11032 5.22305 5.27516 5.29831 5.42205 5.49583 5.53220 5.58549 5.74285 5.89288 6.14551 6.42077 6.64774 6.80852 6.87092 7.36840 8.88526 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.019434 B = 0.007209 C = 0.006472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.462089 B = 3883.239691 C = 4325.583269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.023 3.977 3 Si 0.951 3.049 4 H -0.265 1.265 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.519 4.519 8 H 0.053 0.947 9 C 0.107 3.893 10 H 0.056 0.944 11 C 0.088 3.912 12 N -0.844 5.844 13 C 0.038 3.962 14 C -0.260 4.260 15 C -0.216 4.216 16 C -0.043 4.043 17 C -0.005 4.005 18 C -0.125 4.125 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.118 4.118 22 O -0.186 6.186 23 H 0.263 0.737 24 H 0.055 0.945 25 H 0.012 0.988 26 H 0.343 0.657 27 H 0.346 0.654 28 H 0.126 0.874 29 H 0.161 0.839 30 H 0.120 0.880 31 H 0.072 0.928 32 H 0.043 0.957 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.058 0.942 36 H 0.087 0.913 37 H 0.043 0.957 38 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.764 -7.774 -10.759 14.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.177 4.177 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.557 4.557 8 H 0.071 0.929 9 C 0.088 3.912 10 H 0.074 0.926 11 C -0.043 4.043 12 N -0.375 5.375 13 C -0.014 4.014 14 C -0.279 4.279 15 C -0.235 4.235 16 C -0.092 4.092 17 C -0.023 4.023 18 C -0.163 4.163 19 C -0.153 4.153 20 C -0.157 4.157 21 C -0.156 4.156 22 O -0.083 6.083 23 H 0.072 0.928 24 H 0.073 0.927 25 H 0.030 0.970 26 H 0.155 0.845 27 H 0.160 0.840 28 H 0.144 0.856 29 H 0.179 0.821 30 H 0.138 0.862 31 H 0.090 0.910 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.077 0.923 36 H 0.106 0.894 37 H 0.062 0.938 38 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.131 -7.641 -10.702 14.510 hybrid contribution 0.627 1.166 0.216 1.342 sum 6.759 -6.475 -10.487 14.056 Atomic orbital electron populations 1.70060 1.07317 1.27484 1.49783 1.25729 0.95556 1.02487 0.93977 0.85616 0.79285 0.79840 0.77632 1.18912 1.21233 1.19910 1.21130 0.92904 0.90847 1.50820 0.92904 1.17552 0.98064 0.93526 0.82039 0.92616 1.21553 0.97017 0.97114 0.88655 1.58510 1.61643 1.07991 1.09363 1.23754 0.85806 0.98215 0.93612 1.21513 0.98170 1.12731 0.95507 1.21690 0.95738 1.09280 0.96837 1.22766 0.92480 1.06805 0.87154 1.20707 0.96478 0.96558 0.88569 1.22602 0.97123 0.97096 0.99444 1.22348 0.98265 0.95574 0.99070 1.22134 0.96622 0.97520 0.99446 1.22220 0.95803 0.97424 1.00143 1.83901 1.37672 1.69309 1.17434 0.92800 0.92688 0.97020 0.84463 0.84021 0.85608 0.82129 0.86156 0.90966 0.93854 0.91019 0.89398 0.92334 0.89400 0.93812 0.89743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -53.60 12.91 21.45 0.28 -53.32 16 2 C 0.02 1.31 5.45 84.66 0.46 1.77 16 3 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 4 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 5 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 6 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 7 C -0.52 -28.60 7.45 25.60 0.19 -28.41 16 8 H 0.05 2.88 7.82 -2.91 -0.02 2.85 16 9 C 0.11 5.56 2.40 -12.29 -0.03 5.53 16 10 H 0.06 3.26 7.46 -2.39 -0.02 3.24 16 11 C 0.09 3.82 6.19 86.30 0.53 4.35 16 12 N -0.84 -32.88 9.57 -186.73 -1.79 -34.67 16 13 C 0.04 1.90 5.81 24.83 0.14 2.05 16 14 C -0.26 -12.42 10.78 22.19 0.24 -12.18 16 15 C -0.22 -8.70 10.80 22.19 0.24 -8.46 16 16 C -0.04 -1.67 5.79 24.83 0.14 -1.53 16 17 C 0.00 -0.14 3.31 -10.47 -0.03 -0.18 16 18 C -0.12 -3.43 6.32 31.89 0.20 -3.23 16 19 C -0.12 -2.27 6.83 31.67 0.22 -2.05 16 20 C -0.12 -2.36 6.80 31.32 0.21 -2.14 16 21 C -0.12 -2.91 6.36 31.32 0.20 -2.71 16 22 O -0.19 -8.78 10.49 -2.50 -0.03 -8.81 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.05 2.26 8.14 -2.39 -0.02 2.24 16 25 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 26 H 0.34 10.59 9.08 -89.69 -0.81 9.77 16 27 H 0.35 13.87 8.25 -89.69 -0.74 13.13 16 28 H 0.13 6.06 8.06 -2.92 -0.02 6.03 16 29 H 0.16 5.25 8.06 -2.91 -0.02 5.22 16 30 H 0.12 2.74 8.12 -2.39 -0.02 2.72 16 31 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.04 1.46 8.01 -2.39 -0.02 1.44 16 33 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.04 1.31 7.73 -2.39 -0.02 1.29 16 38 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -64.77 314.16 2.71 -62.06 By element: Atomic # 1 Polarization: 36.21 SS G_CDS: -0.50 Total: 35.71 kcal Atomic # 6 Polarization: -49.90 SS G_CDS: 2.72 Total: -47.18 kcal Atomic # 7 Polarization: -86.48 SS G_CDS: -1.51 Total: -87.99 kcal Atomic # 8 Polarization: -8.78 SS G_CDS: -0.03 Total: -8.81 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -64.77 2.71 -62.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314997.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.199 kcal (2) G-P(sol) polarization free energy of solvation -64.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.065 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds