Wall clock time and date at job start Mon Mar 30 2020 07:36:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86806 * 120.00069 * 2 1 4 4 H 1.48496 * 109.47318 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.46930 * 300.00347 * 3 2 1 6 6 H 1.48503 * 109.46884 * 59.99845 * 3 2 1 7 7 C 1.37876 * 120.00329 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00278 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99822 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47080 * 299.99843 * 9 7 2 11 11 C 1.52990 * 109.47152 * 59.99862 * 9 7 2 12 12 N 1.46904 * 109.47455 * 184.99854 * 11 9 7 13 13 C 1.50697 * 109.46970 * 180.02562 * 9 7 2 14 14 C 1.34511 * 125.79278 * 120.00117 * 13 9 7 15 15 C 1.41386 * 106.84141 * 180.02562 * 14 13 9 16 16 C 1.34507 * 106.84010 * 0.02562 * 15 14 13 17 17 C 1.50703 * 125.78834 * 180.26118 * 16 15 14 18 18 C 1.54264 * 110.03307 * 237.62232 * 17 16 15 19 19 C 1.54964 * 104.15919 * 217.13468 * 18 17 16 20 20 C 1.54889 * 102.77826 * 37.88883 * 19 18 17 21 21 C 1.53872 * 110.03337 * 120.40423 * 17 16 15 22 22 O 1.34304 * 108.42311 * 359.97438 * 16 15 14 23 23 H 0.97004 * 119.99998 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47490 * 305.00382 * 11 9 7 25 25 H 1.09004 * 109.47333 * 64.99908 * 11 9 7 26 26 H 1.00898 * 111.00167 * 180.02562 * 12 11 9 27 27 H 1.00903 * 110.99653 * 303.96042 * 12 11 9 28 28 H 1.07999 * 126.58024 * 359.97438 * 14 13 9 29 29 H 1.08004 * 126.57483 * 179.97438 * 15 14 13 30 30 H 1.09004 * 110.01899 * 359.01348 * 17 16 15 31 31 H 1.08999 * 110.48585 * 335.78462 * 18 17 16 32 32 H 1.09004 * 110.48721 * 98.42603 * 18 17 16 33 33 H 1.09001 * 110.72154 * 279.57163 * 19 18 17 34 34 H 1.09003 * 110.76551 * 156.22024 * 19 18 17 35 35 H 1.09001 * 110.48956 * 203.40601 * 20 19 18 36 36 H 1.09000 * 110.60093 * 80.81268 * 20 19 18 37 37 H 1.09005 * 110.03248 * 238.57499 * 21 17 16 38 38 H 1.09001 * 110.02941 * 359.97438 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 1 0.6248 -2.5571 0.8897 11 6 0.3710 -2.5799 -1.2494 12 7 -0.4523 -3.7952 -1.1906 13 6 2.2304 -3.6445 -0.0005 14 6 2.3270 -4.5970 0.9444 15 6 3.3709 -5.4638 0.5470 16 6 3.8501 -4.9888 -0.6166 17 6 4.9717 -5.5945 -1.4207 18 6 6.0983 -4.5595 -1.6192 19 6 6.6095 -4.8269 -3.0574 20 6 5.3069 -5.1549 -3.8286 21 6 4.4689 -5.9732 -2.8247 22 8 3.1554 -3.8869 -0.9436 23 1 -0.4850 0.8401 0.0004 24 1 -0.2765 -1.7043 -1.2949 25 1 1.0023 -2.6114 -2.1374 26 1 -1.0427 -3.8717 -2.0052 27 1 0.1233 -4.6169 -1.0829 28 1 1.7235 -4.6827 1.8359 29 1 3.7176 -6.3388 1.0767 30 1 5.3607 -6.4770 -0.9127 31 1 5.7046 -3.5465 -1.5366 32 1 6.8960 -4.7201 -0.8939 33 1 7.2917 -5.6769 -3.0725 34 1 7.0885 -3.9384 -3.4688 35 1 5.5277 -5.7494 -4.7151 36 1 4.7839 -4.2393 -4.1049 37 1 4.6145 -7.0395 -2.9984 38 1 3.4135 -5.7194 -2.9244 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260314999.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:36:49 Heat of formation + Delta-G solvation = -30.287445 kcal Electronic energy + Delta-G solvation = -18591.950639 eV Core-core repulsion = 15819.927267 eV Total energy + Delta-G solvation = -2772.023371 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 249.147 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.41181 -38.89548 -37.12833 -34.26551 -33.77864 -32.23505 -30.40088 -29.61193 -27.43147 -25.84115 -23.20778 -22.56627 -21.53021 -21.26785 -20.40535 -18.66608 -17.60027 -16.94342 -16.82578 -16.43835 -16.15880 -15.65433 -15.44854 -14.66493 -14.25107 -14.17042 -14.06155 -13.94593 -13.53817 -13.16413 -12.76330 -12.59462 -12.49246 -12.33783 -12.04336 -11.96792 -11.89344 -11.71313 -11.52514 -11.46430 -11.40274 -10.64772 -10.62035 -9.48766 -8.96474 -8.18948 -6.36745 1.00789 1.36993 1.38650 1.50820 1.85563 2.23186 2.38160 3.05613 3.65376 3.71182 3.73620 3.96791 4.19030 4.27168 4.32098 4.51552 4.56653 4.59768 4.65256 4.71135 4.80061 4.82089 4.95068 4.98674 5.05105 5.15871 5.18056 5.27052 5.35125 5.35521 5.46059 5.48463 5.62445 5.77694 5.84248 6.11039 6.37317 6.56966 6.63829 6.77456 7.31835 8.84128 Molecular weight = 249.15amu Principal moments of inertia in cm(-1) A = 0.020654 B = 0.006971 C = 0.006105 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1355.376435 B = 4015.467230 C = 4585.594803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.022 3.978 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.274 1.274 6 H -0.273 1.273 7 C -0.538 4.538 8 H 0.044 0.956 9 C 0.123 3.877 10 H 0.035 0.965 11 C 0.081 3.919 12 N -0.846 5.846 13 C 0.020 3.980 14 C -0.247 4.247 15 C -0.211 4.211 16 C -0.036 4.036 17 C -0.007 4.007 18 C -0.124 4.124 19 C -0.115 4.115 20 C -0.126 4.126 21 C -0.117 4.117 22 O -0.188 6.188 23 H 0.268 0.732 24 H 0.085 0.915 25 H -0.010 1.010 26 H 0.339 0.661 27 H 0.330 0.670 28 H 0.143 0.857 29 H 0.170 0.830 30 H 0.125 0.875 31 H 0.036 0.964 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.479 -12.064 -5.499 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.784 3.216 4 H -0.198 1.198 5 H -0.199 1.199 6 H -0.198 1.198 7 C -0.577 4.577 8 H 0.063 0.937 9 C 0.104 3.896 10 H 0.053 0.947 11 C -0.050 4.050 12 N -0.375 5.375 13 C -0.030 4.030 14 C -0.266 4.266 15 C -0.230 4.230 16 C -0.086 4.086 17 C -0.025 4.025 18 C -0.162 4.162 19 C -0.152 4.152 20 C -0.164 4.164 21 C -0.155 4.155 22 O -0.085 6.085 23 H 0.077 0.923 24 H 0.103 0.897 25 H 0.008 0.992 26 H 0.151 0.849 27 H 0.142 0.858 28 H 0.160 0.840 29 H 0.188 0.812 30 H 0.143 0.857 31 H 0.055 0.945 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.061 0.939 37 H 0.114 0.886 38 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 10.046 -11.439 -5.099 16.055 hybrid contribution 0.324 0.890 -0.389 1.024 sum 10.370 -10.548 -5.488 15.777 Atomic orbital electron populations 1.69985 1.06914 1.27771 1.49826 1.25701 0.95790 1.02289 0.94011 0.85492 0.78707 0.79239 0.78195 1.19803 1.19901 1.19831 1.21235 0.92649 0.91194 1.52580 0.93734 1.17380 0.88998 0.87770 0.95446 0.94666 1.21719 0.94964 0.93045 0.95227 1.58830 1.26823 1.04771 1.47060 1.23193 0.92393 0.98597 0.88841 1.21682 1.04215 0.98372 1.02354 1.21743 0.99922 1.03479 0.97819 1.22945 0.98833 0.88654 0.98154 1.20578 0.89068 0.97931 0.94896 1.22499 0.97176 0.97622 0.98913 1.22501 0.97092 1.02340 0.93307 1.22383 0.96027 0.99432 0.98523 1.22229 0.98946 1.01502 0.92811 1.83953 1.39591 1.39967 1.45030 0.92309 0.89660 0.99186 0.84858 0.85843 0.83962 0.81236 0.85666 0.94470 0.89717 0.88754 0.91358 0.89383 0.93881 0.88613 0.94045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.18 11.29 21.45 0.24 -51.93 16 2 C 0.02 1.25 5.29 84.66 0.45 1.70 16 3 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 4 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 5 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 6 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 7 C -0.54 -31.11 8.55 25.60 0.22 -30.89 16 8 H 0.04 2.64 7.74 -2.91 -0.02 2.62 16 9 C 0.12 6.58 2.39 -12.29 -0.03 6.55 16 10 H 0.04 2.07 8.10 -2.39 -0.02 2.05 16 11 C 0.08 4.09 6.07 86.30 0.52 4.62 16 12 N -0.85 -35.58 9.62 -186.72 -1.80 -37.37 16 13 C 0.02 0.95 4.80 24.83 0.12 1.07 16 14 C -0.25 -10.27 10.78 22.19 0.24 -10.03 16 15 C -0.21 -7.28 10.79 22.19 0.24 -7.04 16 16 C -0.04 -1.29 5.51 24.83 0.14 -1.15 16 17 C -0.01 -0.17 3.36 -10.82 -0.04 -0.20 16 18 C -0.12 -3.10 6.36 31.69 0.20 -2.90 16 19 C -0.12 -2.23 6.91 31.91 0.22 -2.01 16 20 C -0.13 -2.71 6.83 31.67 0.22 -2.49 16 21 C -0.12 -2.72 6.45 31.32 0.20 -2.51 16 22 O -0.19 -8.47 10.52 -2.51 -0.03 -8.50 16 23 H 0.27 14.45 8.31 -92.71 -0.77 13.68 16 24 H 0.09 4.76 5.95 -2.39 -0.01 4.74 16 25 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 26 H 0.34 12.23 9.08 -89.70 -0.81 11.42 16 27 H 0.33 13.21 8.07 -89.69 -0.72 12.49 16 28 H 0.14 5.61 8.06 -2.91 -0.02 5.59 16 29 H 0.17 4.49 8.06 -2.91 -0.02 4.47 16 30 H 0.13 2.38 8.12 -2.39 -0.02 2.36 16 31 H 0.04 1.20 7.74 -2.39 -0.02 1.19 16 32 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 33 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 34 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 36 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.10 1.64 8.14 -2.38 -0.02 1.62 16 38 H 0.04 1.18 7.67 -2.39 -0.02 1.16 16 Total: -1.00 -64.52 310.25 2.66 -61.86 By element: Atomic # 1 Polarization: 35.48 SS G_CDS: -0.48 Total: 35.00 kcal Atomic # 6 Polarization: -47.99 SS G_CDS: 2.70 Total: -45.29 kcal Atomic # 7 Polarization: -87.75 SS G_CDS: -1.55 Total: -89.31 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: -0.03 Total: -8.50 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Total: -64.52 2.66 -61.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260314999.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.573 kcal (2) G-P(sol) polarization free energy of solvation -64.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds