Wall clock time and date at job start Mon Mar 30 2020 06:05:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38225 * 120.01290 * 2 1 4 4 C 1.38214 * 120.02977 * 180.27843 * 3 2 1 5 5 C 1.50705 * 119.97734 * 180.02562 * 4 3 2 6 6 H 1.08997 * 109.46526 * 345.88837 * 5 4 3 7 7 C 1.50695 * 109.47398 * 105.89219 * 5 4 3 8 8 H 1.08003 * 120.00381 * 65.11818 * 7 5 4 9 9 C 1.37882 * 119.99957 * 245.12273 * 7 5 4 10 10 N 1.31513 * 120.00028 * 173.44673 * 9 7 5 11 11 Si 1.86802 * 119.99870 * 353.44934 * 9 7 5 12 12 H 1.48492 * 109.47429 * 85.60321 * 11 9 7 13 13 H 1.48494 * 109.46935 * 205.60680 * 11 9 7 14 14 H 1.48502 * 109.46871 * 325.60533 * 11 9 7 15 15 N 1.46906 * 109.46797 * 225.89199 * 5 4 3 16 16 C 1.46899 * 110.99422 * 154.99828 * 15 5 4 17 17 C 1.53000 * 117.49608 * 223.74168 * 16 15 5 18 18 C 1.53004 * 117.49587 * 155.08758 * 16 15 5 19 19 C 1.38277 * 120.05040 * 0.02562 * 4 3 2 20 20 C 1.38173 * 120.02322 * 0.02562 * 19 4 3 21 21 C 1.38435 * 120.01723 * 180.28489 * 2 1 3 22 22 F 1.35104 * 120.02407 * 359.69823 * 21 2 1 23 23 H 1.09001 * 109.47032 * 269.71699 * 1 2 3 24 24 H 1.08997 * 109.47745 * 29.71442 * 1 2 3 25 25 H 1.08996 * 109.47011 * 149.72217 * 1 2 3 26 26 H 1.08006 * 119.98482 * 0.28447 * 3 2 1 27 27 H 0.97001 * 119.99613 * 179.97438 * 10 9 7 28 28 H 1.00897 * 110.99981 * 31.04021 * 15 5 4 29 29 H 1.08995 * 115.55439 * 9.41804 * 16 15 5 30 30 H 1.09005 * 117.49766 * 0.02562 * 17 16 15 31 31 H 1.09004 * 117.49903 * 145.02187 * 17 16 15 32 32 H 1.08995 * 117.49658 * 214.97782 * 18 16 15 33 33 H 1.09002 * 117.50001 * 359.97438 * 18 16 15 34 34 H 1.08001 * 119.98259 * 180.02562 * 19 4 3 35 35 H 1.07997 * 120.01121 * 179.97438 * 20 19 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1969 0.0000 4 6 3.5805 1.1973 -0.0058 5 6 4.3331 2.5030 -0.0052 6 1 3.6500 3.3161 -0.2506 7 6 4.9268 2.7400 1.3594 8 1 5.6920 2.0784 1.7379 9 6 4.4931 3.8016 2.1250 10 7 4.9149 3.9348 3.3635 11 14 3.3063 5.0505 1.4030 12 1 1.9135 4.5630 1.5684 13 1 3.4636 6.3479 2.1081 14 1 3.5984 5.2334 -0.0414 15 7 5.4086 2.4486 -1.0044 16 6 5.7684 3.7965 -1.4644 17 6 5.9791 3.9976 -2.9664 18 6 7.1802 4.0008 -2.0175 19 6 4.2733 0.0006 -0.0122 20 6 3.5843 -1.1971 -0.0133 21 6 2.1995 -1.1987 -0.0060 22 9 1.5248 -2.3692 -0.0056 23 1 -0.3633 -0.0051 1.0277 24 1 -0.3634 0.8925 -0.5094 25 1 -0.3633 -0.8875 -0.5181 26 1 1.6583 2.1322 0.0046 27 1 4.6101 4.6819 3.9019 28 1 5.1511 1.8582 -1.7810 29 1 5.3235 4.6188 -0.9041 30 1 5.8505 3.1298 -3.6133 31 1 5.6732 4.9524 -3.3942 32 1 7.6640 4.9577 -1.8214 33 1 7.8422 3.1352 -2.0397 34 1 5.3533 0.0022 -0.0163 35 1 4.1255 -2.1316 -0.0186 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260324182.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:59 Heat of formation + Delta-G solvation = 1.226677 kcal Electronic energy + Delta-G solvation = -17951.084751 eV Core-core repulsion = 15056.967629 eV Total energy + Delta-G solvation = -2894.117121 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -48.46747 -38.92654 -37.13960 -34.21337 -32.36773 -31.76623 -29.56246 -26.68313 -26.41329 -22.85950 -21.92932 -21.87726 -20.47812 -19.62614 -17.12021 -17.05108 -16.01508 -15.43505 -15.29098 -15.17567 -14.29067 -13.96889 -13.41563 -13.30548 -13.13795 -12.79529 -12.70873 -12.67850 -12.17087 -11.81339 -11.69183 -11.21130 -11.11856 -10.97920 -10.75903 -10.48928 -10.14509 -9.88943 -9.74839 -9.52321 -8.71431 -8.39503 -7.85785 -7.30328 -6.21755 -4.19074 1.73007 1.75538 3.13678 3.18570 3.24399 4.11509 4.24817 4.38920 4.73795 4.78017 5.06598 5.12870 5.21567 5.42429 5.49686 5.54202 5.75923 5.77218 5.81015 5.90704 5.98156 5.99741 6.05600 6.26601 6.37426 6.44117 6.53921 6.57624 6.64121 6.71860 6.84831 7.22391 7.37419 7.52114 7.87267 8.18082 8.54313 8.91798 9.39463 10.90878 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.017950 B = 0.008182 C = 0.006728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.545665 B = 3421.502032 C = 4160.679616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.049 4.049 5 C 0.215 3.785 6 H 0.024 0.976 7 C -0.480 4.480 8 H 0.083 0.917 9 C 0.074 3.926 10 N -0.886 5.886 11 Si 0.867 3.133 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.264 1.264 15 N -0.646 5.646 16 C 0.049 3.951 17 C -0.224 4.224 18 C -0.175 4.175 19 C -0.079 4.079 20 C -0.152 4.152 21 C 0.065 3.935 22 F -0.151 7.151 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.120 0.880 27 H 0.266 0.734 28 H 0.316 0.684 29 H 0.108 0.892 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.093 0.907 34 H 0.136 0.864 35 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -4.001 -9.564 11.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.122 4.122 3 C -0.122 4.122 4 C -0.051 4.051 5 C 0.108 3.892 6 H 0.041 0.959 7 C -0.518 4.518 8 H 0.101 0.899 9 C -0.129 4.129 10 N -0.523 5.523 11 Si 0.694 3.306 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.190 1.190 15 N -0.276 5.276 16 C -0.062 4.062 17 C -0.263 4.263 18 C -0.214 4.214 19 C -0.097 4.097 20 C -0.171 4.171 21 C 0.046 3.954 22 F -0.130 7.130 23 H 0.088 0.912 24 H 0.085 0.915 25 H 0.082 0.918 26 H 0.138 0.862 27 H 0.076 0.924 28 H 0.135 0.865 29 H 0.126 0.874 30 H 0.106 0.894 31 H 0.103 0.897 32 H 0.105 0.895 33 H 0.112 0.888 34 H 0.154 0.846 35 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -3.906 -3.965 -8.887 10.486 hybrid contribution -1.402 0.783 -0.673 1.741 sum -5.308 -3.181 -9.560 11.388 Atomic orbital electron populations 1.20658 0.91040 1.02488 1.02389 1.19751 0.96289 0.92066 1.04109 1.20759 0.93959 0.96457 1.01034 1.20598 0.93001 0.97070 0.94382 1.18782 0.88108 0.89202 0.93093 0.95870 1.20811 1.21682 1.12674 0.96662 0.89907 1.25089 0.95771 0.97439 0.94647 1.69878 1.44220 1.30822 1.07402 0.87070 0.82094 0.81875 0.79515 1.19957 1.21179 1.19001 1.60762 1.43859 1.08378 1.14565 1.22376 0.98484 0.93537 0.91802 1.23441 1.05840 1.02301 0.94712 1.23009 0.92151 1.02374 1.03829 1.20876 1.00685 0.90358 0.97791 1.21070 0.91978 0.99597 1.04431 1.17410 0.90090 0.80436 1.07439 1.91403 1.80640 1.46433 1.94509 0.91230 0.91459 0.91753 0.86174 0.92363 0.86512 0.87447 0.89371 0.89739 0.89528 0.88829 0.84603 0.85628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.50 9.84 36.00 0.35 -1.15 16 2 C -0.12 -2.07 5.89 -104.56 -0.62 -2.69 16 3 C -0.10 -1.93 9.32 -39.60 -0.37 -2.30 16 4 C -0.05 -0.98 4.65 -104.61 -0.49 -1.47 16 5 C 0.21 4.71 2.08 -70.01 -0.15 4.56 16 6 H 0.02 0.53 4.05 -51.93 -0.21 0.31 16 7 C -0.48 -12.70 8.96 -34.44 -0.31 -13.01 16 8 H 0.08 2.45 8.06 -52.48 -0.42 2.03 16 9 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 10 N -0.89 -25.97 13.96 55.43 0.77 -25.20 16 11 Si 0.87 20.18 26.58 -169.99 -4.52 15.66 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 14 H -0.26 -5.79 5.41 56.52 0.31 -5.49 16 15 N -0.65 -12.69 6.12 -102.17 -0.63 -13.31 16 16 C 0.05 0.92 6.07 -67.71 -0.41 0.51 16 17 C -0.22 -3.36 10.23 -26.70 -0.27 -3.64 16 18 C -0.18 -2.83 10.46 -26.69 -0.28 -3.11 16 19 C -0.08 -1.45 9.08 -39.59 -0.36 -1.81 16 20 C -0.15 -2.56 10.03 -39.52 -0.40 -2.95 16 21 C 0.07 1.13 7.24 -39.42 -0.29 0.84 16 22 F -0.15 -2.50 16.48 2.25 0.04 -2.46 16 23 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 24 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.06 0.81 7.64 -51.93 -0.40 0.42 16 26 H 0.12 2.16 7.99 -52.48 -0.42 1.74 16 27 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 28 H 0.32 5.53 7.93 -39.29 -0.31 5.22 16 29 H 0.11 2.24 5.97 -51.93 -0.31 1.93 16 30 H 0.09 1.22 8.09 -51.93 -0.42 0.80 16 31 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 32 H 0.09 1.30 8.14 -51.93 -0.42 0.88 16 33 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 34 H 0.14 2.47 7.90 -52.49 -0.41 2.06 16 35 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 LS Contribution 296.71 15.07 4.47 4.47 Total: -1.00 -28.08 296.71 -8.20 -36.29 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -4.67 Total: 8.83 kcal Atomic # 6 Polarization: -20.60 SS G_CDS: -3.67 Total: -24.27 kcal Atomic # 7 Polarization: -38.66 SS G_CDS: 0.15 Total: -38.51 kcal Atomic # 9 Polarization: -2.50 SS G_CDS: 0.04 Total: -2.46 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.52 Total: 15.66 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -28.08 -8.20 -36.29 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260324182.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.513 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds