Wall clock time and date at job start Mon Mar 30 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47319 * 2 1 4 4 C 1.47896 * 110.99829 * 304.24770 * 3 2 1 5 5 C 1.54604 * 102.62797 * 210.98095 * 4 3 2 6 6 H 1.08996 * 110.74261 * 267.26605 * 5 4 3 7 7 C 1.53004 * 110.74419 * 143.92851 * 5 4 3 8 8 C 1.50707 * 109.46664 * 71.77630 * 7 5 4 9 9 H 1.07999 * 120.00175 * 355.03448 * 8 7 5 10 10 C 1.37884 * 119.99690 * 175.02693 * 8 7 5 11 11 N 1.31512 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99774 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47399 * 90.00014 * 12 10 8 14 14 H 1.48504 * 109.46867 * 210.00401 * 12 10 8 15 15 H 1.48502 * 109.47091 * 329.99826 * 12 10 8 16 16 C 1.51572 * 102.81422 * 25.60258 * 5 4 3 17 17 C 1.38959 * 107.95258 * 343.82952 * 16 5 4 18 18 C 1.39386 * 119.10559 * 179.62904 * 17 16 5 19 19 C 1.37960 * 120.25150 * 0.20598 * 18 17 16 20 20 C 1.38224 * 120.28848 * 359.97438 * 19 18 17 21 21 C 1.38087 * 131.57804 * 163.55425 * 16 5 4 22 22 F 1.35107 * 119.98705 * 0.47172 * 21 16 5 23 23 H 1.09001 * 109.47377 * 185.19677 * 1 2 3 24 24 H 1.09002 * 109.47280 * 305.19857 * 1 2 3 25 25 H 1.08997 * 109.47665 * 65.19749 * 1 2 3 26 26 H 1.08998 * 109.47058 * 239.99539 * 2 1 3 27 27 H 1.09003 * 109.46830 * 119.99900 * 2 1 3 28 28 H 1.09005 * 110.77981 * 329.26509 * 4 3 2 29 29 H 1.09000 * 110.78082 * 92.50710 * 4 3 2 30 30 H 1.08994 * 109.47283 * 191.77573 * 7 5 4 31 31 H 1.08993 * 109.47564 * 311.78131 * 7 5 4 32 32 H 0.97003 * 119.99197 * 179.97438 * 11 10 8 33 33 H 1.08006 * 119.87355 * 180.18953 * 18 17 16 34 34 H 1.08001 * 119.85409 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.06973 * 179.87945 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4637 2.1437 -1.1413 5 6 2.5903 3.1546 -1.4561 6 1 2.4275 4.0920 -0.9244 7 6 2.6964 3.3959 -2.9633 8 6 1.5135 4.2066 -3.4266 9 1 0.7212 4.4501 -2.7342 10 6 1.4428 4.6374 -4.7344 11 7 2.4074 4.3405 -5.5776 12 14 -0.0231 5.6428 -5.3085 13 1 0.2585 7.0871 -5.1089 14 1 -0.2691 5.3809 -6.7495 15 1 -1.2241 5.2595 -4.5238 16 6 3.8282 2.4508 -0.9368 17 6 3.4162 1.4235 -0.0966 18 6 4.3774 0.6146 0.5072 19 6 5.7189 0.8373 0.2744 20 6 6.1207 1.8636 -0.5597 21 6 5.1719 2.6695 -1.1685 22 9 5.5618 3.6732 -1.9845 23 1 -0.3634 -1.0234 0.0931 24 1 -0.3634 0.5924 0.8398 25 1 -0.3634 0.4311 -0.9328 26 1 1.8932 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.2851 1.4864 -1.9924 29 1 0.5473 2.6589 -0.8536 30 1 3.6163 3.9387 -3.1805 31 1 2.7075 2.4388 -3.4846 32 1 2.3574 4.6434 -6.4978 33 1 4.0709 -0.1894 1.1600 34 1 6.4582 0.2064 0.7453 35 1 7.1719 2.0360 -0.7379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260337278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:48 Heat of formation + Delta-G solvation = -19.828403 kcal Electronic energy + Delta-G solvation = -18250.793915 eV Core-core repulsion = 15355.763776 eV Total energy + Delta-G solvation = -2895.030138 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -48.27880 -40.40918 -36.59750 -34.27733 -32.41938 -30.68550 -29.21276 -28.42164 -26.32645 -23.62748 -22.60066 -21.81951 -20.76630 -19.59881 -16.99943 -16.49997 -16.08458 -15.32691 -15.18456 -14.95039 -14.80201 -14.51037 -14.27464 -13.74349 -12.58915 -12.56421 -12.32684 -12.24474 -12.09611 -11.82050 -11.52804 -11.43224 -11.23650 -11.01313 -10.87353 -10.62726 -10.50711 -10.12659 -9.62095 -9.43391 -9.06764 -8.36231 -8.21287 -7.48058 -6.00071 -4.03470 1.50839 1.56652 3.31670 3.38063 3.40363 3.73753 4.10969 4.44769 4.72119 4.86364 5.05624 5.17128 5.19553 5.34112 5.36221 5.39039 5.51344 5.67715 5.68952 5.81924 5.85474 6.05438 6.20177 6.25378 6.27258 6.49487 6.54356 6.55248 6.65761 6.80012 7.05601 7.25542 7.45918 7.65462 7.76585 7.98218 8.37399 9.02757 9.60475 11.10929 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.007779 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.699705 B = 3598.732587 C = 4773.164575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.046 3.954 3 N -0.480 5.480 4 C 0.063 3.937 5 C -0.043 4.043 6 H 0.085 0.915 7 C 0.030 3.970 8 C -0.521 4.521 9 H 0.056 0.944 10 C 0.059 3.941 11 N -0.892 5.892 12 Si 0.891 3.109 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.158 4.158 17 C 0.121 3.879 18 C -0.159 4.159 19 C -0.077 4.077 20 C -0.188 4.188 21 C 0.143 3.857 22 F -0.131 7.131 23 H 0.060 0.940 24 H 0.063 0.937 25 H 0.062 0.938 26 H 0.044 0.956 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.091 0.909 30 H 0.034 0.966 31 H 0.012 0.988 32 H 0.261 0.739 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.194 -8.982 11.595 14.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.080 4.080 3 N -0.194 5.194 4 C -0.062 4.062 5 C -0.062 4.062 6 H 0.103 0.897 7 C -0.008 4.008 8 C -0.559 4.559 9 H 0.075 0.925 10 C -0.143 4.143 11 N -0.531 5.531 12 Si 0.719 3.281 13 H -0.206 1.206 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.162 4.162 17 C 0.022 3.978 18 C -0.180 4.180 19 C -0.096 4.096 20 C -0.208 4.208 21 C 0.123 3.877 22 F -0.109 7.109 23 H 0.079 0.921 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.063 0.937 27 H 0.094 0.906 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.052 0.948 31 H 0.031 0.969 32 H 0.070 0.930 33 H 0.138 0.862 34 H 0.147 0.853 35 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.964 -8.725 11.849 14.846 hybrid contribution -0.445 0.450 -1.151 1.313 sum 1.519 -8.275 10.698 13.610 Atomic orbital electron populations 1.21855 0.94349 1.01866 1.03085 1.22246 0.96368 0.88083 1.01331 1.60653 1.02934 1.13383 1.42402 1.23302 0.98665 0.94867 0.89349 1.21145 0.87412 0.96545 1.01093 0.89692 1.19188 0.98425 0.97054 0.86099 1.21179 1.05732 1.33634 0.95370 0.92532 1.25013 0.96155 0.96198 0.96921 1.69977 1.32384 1.45971 1.04727 0.86611 0.83006 0.80618 0.77874 1.20633 1.21270 1.19861 1.20937 0.94247 1.00575 1.00404 1.19505 0.89464 0.94783 0.94025 1.20380 0.91819 1.01469 1.04331 1.20559 0.95052 0.96720 0.97257 1.20936 0.99044 0.98622 1.02234 1.17087 0.91211 0.87623 0.91810 1.91526 1.91419 1.57946 1.70039 0.92061 0.91744 0.91890 0.93720 0.90639 0.91590 0.89034 0.94754 0.96922 0.92968 0.86162 0.85335 0.85099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.61 37.15 0.36 -1.42 16 2 C 0.05 0.60 5.26 -3.83 -0.02 0.58 16 3 N -0.48 -7.87 5.13 -169.03 -0.87 -8.73 16 4 C 0.06 1.17 4.79 -2.43 -0.01 1.16 16 5 C -0.04 -0.93 3.00 -90.50 -0.27 -1.20 16 6 H 0.09 1.86 8.14 -51.93 -0.42 1.44 16 7 C 0.03 0.77 4.36 -27.88 -0.12 0.65 16 8 C -0.52 -14.49 8.82 -34.43 -0.30 -14.80 16 9 H 0.06 1.51 7.75 -52.49 -0.41 1.10 16 10 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 11 N -0.89 -26.91 13.29 55.43 0.74 -26.18 16 12 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 13 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 14 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 15 H -0.27 -6.43 7.11 56.52 0.40 -6.02 16 16 C -0.16 -3.13 5.65 -103.98 -0.59 -3.71 16 17 C 0.12 2.08 5.94 -83.41 -0.50 1.59 16 18 C -0.16 -2.25 9.54 -39.26 -0.37 -2.62 16 19 C -0.08 -1.01 10.02 -39.69 -0.40 -1.41 16 20 C -0.19 -2.87 10.04 -39.46 -0.40 -3.26 16 21 C 0.14 2.73 7.21 -39.51 -0.29 2.44 16 22 F -0.13 -2.79 15.77 2.25 0.04 -2.75 16 23 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 25 H 0.06 0.79 7.11 -51.93 -0.37 0.42 16 26 H 0.04 0.61 8.12 -51.93 -0.42 0.19 16 27 H 0.08 0.86 7.52 -51.93 -0.39 0.47 16 28 H 0.07 1.28 7.26 -51.93 -0.38 0.90 16 29 H 0.09 1.62 8.14 -51.93 -0.42 1.20 16 30 H 0.03 0.98 6.66 -51.93 -0.35 0.64 16 31 H 0.01 0.35 7.95 -51.93 -0.41 -0.06 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.12 1.39 7.50 -52.48 -0.39 0.99 16 34 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 35 H 0.13 1.67 8.06 -52.49 -0.42 1.25 16 LS Contribution 291.59 15.07 4.39 4.39 Total: -1.00 -30.60 291.59 -8.51 -39.12 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -4.79 Total: -1.94 kcal Atomic # 6 Polarization: -17.43 SS G_CDS: -3.00 Total: -20.43 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: -0.13 Total: -34.91 kcal Atomic # 9 Polarization: -2.79 SS G_CDS: 0.04 Total: -2.75 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -30.60 -8.51 -39.12 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.287 kcal (2) G-P(sol) polarization free energy of solvation -30.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds