Wall clock time and date at job start Mon Mar 30 2020 07:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46901 * 109.47319 * 2 1 4 4 C 1.47896 * 110.99829 * 304.24770 * 3 2 1 5 5 C 1.54604 * 102.62797 * 210.98095 * 4 3 2 6 6 H 1.08996 * 110.74261 * 267.26605 * 5 4 3 7 7 C 1.53004 * 110.74419 * 143.92851 * 5 4 3 8 8 C 1.50707 * 109.46664 * 71.77630 * 7 5 4 9 9 H 1.07999 * 120.00175 * 355.03448 * 8 7 5 10 10 C 1.37884 * 119.99690 * 175.02693 * 8 7 5 11 11 N 1.31512 * 119.99730 * 0.02562 * 10 8 7 12 12 Si 1.86793 * 119.99774 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47399 * 90.00014 * 12 10 8 14 14 H 1.48504 * 109.46867 * 210.00401 * 12 10 8 15 15 H 1.48502 * 109.47091 * 329.99826 * 12 10 8 16 16 C 1.51572 * 102.81422 * 25.60258 * 5 4 3 17 17 C 1.38959 * 107.95258 * 343.82952 * 16 5 4 18 18 C 1.39386 * 119.10559 * 179.62904 * 17 16 5 19 19 C 1.37960 * 120.25150 * 0.20598 * 18 17 16 20 20 C 1.38224 * 120.28848 * 359.97438 * 19 18 17 21 21 C 1.38087 * 131.57804 * 163.55425 * 16 5 4 22 22 F 1.35107 * 119.98705 * 0.47172 * 21 16 5 23 23 H 1.09001 * 109.47377 * 185.19677 * 1 2 3 24 24 H 1.09002 * 109.47280 * 305.19857 * 1 2 3 25 25 H 1.08997 * 109.47665 * 65.19749 * 1 2 3 26 26 H 1.08998 * 109.47058 * 239.99539 * 2 1 3 27 27 H 1.09003 * 109.46830 * 119.99900 * 2 1 3 28 28 H 1.09005 * 110.77981 * 329.26509 * 4 3 2 29 29 H 1.09000 * 110.78082 * 92.50710 * 4 3 2 30 30 H 1.08994 * 109.47283 * 191.77573 * 7 5 4 31 31 H 1.08993 * 109.47564 * 311.78131 * 7 5 4 32 32 H 0.97003 * 119.99197 * 179.97438 * 11 10 8 33 33 H 1.08006 * 119.87355 * 180.18953 * 18 17 16 34 34 H 1.08001 * 119.85409 * 180.02562 * 19 18 17 35 35 H 1.07998 * 120.06973 * 179.87945 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4637 2.1437 -1.1413 5 6 2.5903 3.1546 -1.4561 6 1 2.4275 4.0920 -0.9244 7 6 2.6964 3.3959 -2.9633 8 6 1.5135 4.2066 -3.4266 9 1 0.7212 4.4501 -2.7342 10 6 1.4428 4.6374 -4.7344 11 7 2.4074 4.3405 -5.5776 12 14 -0.0231 5.6428 -5.3085 13 1 0.2585 7.0871 -5.1089 14 1 -0.2691 5.3809 -6.7495 15 1 -1.2241 5.2595 -4.5238 16 6 3.8282 2.4508 -0.9368 17 6 3.4162 1.4235 -0.0966 18 6 4.3774 0.6146 0.5072 19 6 5.7189 0.8373 0.2744 20 6 6.1207 1.8636 -0.5597 21 6 5.1719 2.6695 -1.1685 22 9 5.5618 3.6732 -1.9845 23 1 -0.3634 -1.0234 0.0931 24 1 -0.3634 0.5924 0.8398 25 1 -0.3634 0.4311 -0.9328 26 1 1.8932 -0.5139 -0.8899 27 1 1.8932 -0.5138 0.8900 28 1 1.2851 1.4864 -1.9924 29 1 0.5473 2.6589 -0.8536 30 1 3.6163 3.9387 -3.1805 31 1 2.7075 2.4388 -3.4846 32 1 2.3574 4.6434 -6.4978 33 1 4.0709 -0.1894 1.1600 34 1 6.4582 0.2064 0.7453 35 1 7.1719 2.0360 -0.7379 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260337278.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:48 Heat of formation + Delta-G solvation = -38.106039 kcal Electronic energy + Delta-G solvation = -18251.586492 eV Core-core repulsion = 15355.763776 eV Total energy + Delta-G solvation = -2895.822716 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 249.122 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.81510 -41.74593 -37.83334 -36.01763 -34.24878 -31.99508 -30.74183 -29.68439 -28.04708 -25.39394 -23.87170 -23.24063 -22.11435 -21.12432 -18.64312 -18.32533 -17.46178 -16.83584 -16.62093 -16.40141 -16.22026 -16.03136 -15.71721 -15.11385 -14.32901 -13.93787 -13.89877 -13.75198 -13.38057 -13.21310 -13.04657 -12.88293 -12.73881 -12.45508 -12.33778 -12.18945 -12.04109 -11.86875 -11.44624 -11.15514 -10.82686 -10.57184 -9.58056 -8.78297 -8.21183 -6.33547 0.24395 0.29778 1.38215 1.40252 1.51041 2.38879 2.49881 2.84517 3.11572 3.40080 3.57660 3.73631 3.99604 4.12423 4.15752 4.24085 4.35059 4.44949 4.50071 4.57170 4.74414 4.82949 4.85905 5.00846 5.07465 5.11347 5.23043 5.28632 5.30086 5.39348 5.43581 5.59534 5.69059 5.76461 5.98802 6.16122 6.25161 6.81883 7.35665 8.90814 Molecular weight = 249.12amu Principal moments of inertia in cm(-1) A = 0.020363 B = 0.007779 C = 0.005865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1374.699705 B = 3598.732587 C = 4773.164575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.042 3.958 3 N -0.478 5.478 4 C 0.076 3.924 5 C -0.044 4.044 6 H 0.069 0.931 7 C 0.044 3.956 8 C -0.537 4.537 9 H 0.066 0.934 10 C -0.001 4.001 11 N -0.934 5.934 12 Si 0.967 3.033 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.258 1.258 16 C -0.199 4.199 17 C 0.112 3.888 18 C -0.146 4.146 19 C -0.058 4.058 20 C -0.184 4.184 21 C 0.103 3.897 22 F -0.158 7.158 23 H 0.087 0.913 24 H 0.066 0.934 25 H 0.045 0.955 26 H 0.037 0.963 27 H 0.105 0.895 28 H 0.051 0.949 29 H 0.097 0.903 30 H -0.004 1.004 31 H -0.018 1.018 32 H 0.263 0.737 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -10.876 13.881 17.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.083 4.083 3 N -0.192 5.192 4 C -0.050 4.050 5 C -0.062 4.062 6 H 0.088 0.912 7 C 0.007 3.993 8 C -0.574 4.574 9 H 0.084 0.916 10 C -0.198 4.198 11 N -0.574 5.574 12 Si 0.791 3.209 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.182 1.182 16 C -0.203 4.203 17 C 0.013 3.987 18 C -0.167 4.167 19 C -0.076 4.076 20 C -0.203 4.203 21 C 0.083 3.917 22 F -0.137 7.137 23 H 0.106 0.894 24 H 0.085 0.915 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.123 0.877 28 H 0.069 0.931 29 H 0.115 0.885 30 H 0.014 0.986 31 H 0.000 1.000 32 H 0.072 0.928 33 H 0.177 0.823 34 H 0.198 0.802 35 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 1.559 -10.630 14.159 17.774 hybrid contribution -0.215 0.959 -1.808 2.058 sum 1.343 -9.671 12.351 15.745 Atomic orbital electron populations 1.21845 0.93238 1.03469 1.02249 1.22444 0.97392 0.86134 1.02335 1.60716 1.02754 1.15157 1.40535 1.23034 0.97752 0.94217 0.89980 1.20885 0.90625 0.97324 0.97397 0.91236 1.18913 0.96315 0.94569 0.89525 1.21593 1.06308 1.33642 0.95893 0.91625 1.26017 0.99355 0.97419 0.97049 1.70134 1.34729 1.47385 1.05158 0.85425 0.79338 0.78704 0.77464 1.19999 1.20768 1.18179 1.20934 0.93938 1.02448 1.02989 1.19806 0.90195 0.94576 0.94167 1.20888 0.91520 1.01018 1.03280 1.21171 0.95763 0.95484 0.95150 1.21318 0.99462 0.98051 1.01483 1.17699 0.92200 0.88595 0.93189 1.91449 1.91612 1.59408 1.71201 0.89417 0.91493 0.93627 0.94440 0.87664 0.93104 0.88461 0.98577 0.99987 0.92824 0.82265 0.80210 0.82710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 9.61 71.98 0.69 -2.46 16 2 C 0.04 1.00 5.26 86.30 0.45 1.46 16 3 N -0.48 -15.15 5.13 -688.69 -3.53 -18.68 16 4 C 0.08 2.90 4.79 86.66 0.41 3.32 16 5 C -0.04 -2.00 3.00 -10.71 -0.03 -2.03 16 6 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 7 C 0.04 2.49 4.36 29.85 0.13 2.62 16 8 C -0.54 -31.21 8.82 25.60 0.23 -30.98 16 9 H 0.07 3.60 7.75 -2.91 -0.02 3.58 16 10 C 0.00 -0.04 5.46 84.66 0.46 0.42 16 11 N -0.93 -58.85 13.29 21.45 0.28 -58.56 16 12 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 13 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 14 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 15 H -0.26 -11.28 7.11 99.48 0.71 -10.57 16 16 C -0.20 -8.18 5.65 -19.45 -0.11 -8.29 16 17 C 0.11 3.69 5.94 38.28 0.23 3.92 16 18 C -0.15 -3.55 9.54 22.48 0.21 -3.33 16 19 C -0.06 -1.25 10.02 22.20 0.22 -1.03 16 20 C -0.18 -5.25 10.04 22.35 0.22 -5.03 16 21 C 0.10 4.07 7.21 22.31 0.16 4.23 16 22 F -0.16 -7.27 15.77 44.97 0.71 -6.56 16 23 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 24 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 25 H 0.04 1.10 7.11 -2.39 -0.02 1.09 16 26 H 0.04 0.96 8.12 -2.39 -0.02 0.94 16 27 H 0.11 1.91 7.52 -2.39 -0.02 1.89 16 28 H 0.05 2.07 7.26 -2.38 -0.02 2.05 16 29 H 0.10 3.52 8.14 -2.39 -0.02 3.50 16 30 H 0.00 -0.26 6.66 -2.39 -0.02 -0.28 16 31 H -0.02 -1.11 7.95 -2.39 -0.02 -1.13 16 32 H 0.26 15.53 8.31 -92.71 -0.77 14.76 16 33 H 0.16 2.66 7.50 -2.91 -0.02 2.64 16 34 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 35 H 0.16 3.59 8.06 -2.91 -0.02 3.56 16 Total: -1.00 -71.54 291.59 3.85 -67.69 By element: Atomic # 1 Polarization: 5.15 SS G_CDS: 1.07 Total: 6.22 kcal Atomic # 6 Polarization: -40.47 SS G_CDS: 3.29 Total: -37.19 kcal Atomic # 7 Polarization: -74.00 SS G_CDS: -3.25 Total: -77.24 kcal Atomic # 9 Polarization: -7.27 SS G_CDS: 0.71 Total: -6.56 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -71.54 3.85 -67.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260337278.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.584 kcal (2) G-P(sol) polarization free energy of solvation -71.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds